Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0009126 Sechium edule HOM05D004168 ORTHO05D004999 3.1e-143 511.9 284 100.0
CsaV3_4G034330 Cucumis sativus L. HOM05D004168 ORTHO05D004999 1.3e-112 410.2 288 72.2
ClCG05G019900 Citrullus lanatus HOM05D004168 ORTHO05D004999 5.9e-110 401.4 281 73.0
Sed0010101 Sechium edule HOM05D004168 ORTHO05D004999 1.2e-107 393.7 288 70.1
MELO3C016753.2 Cucumis melo HOM05D004168 ORTHO05D004999 1.1e-92 344.0 247 70.4
Thecc.08G006900 Theobroma cacao HOM05D004168 ORTHO05D004999 2.6e-89 332.8 291 59.1
Prupe.1G435200 Prunus persica HOM05D004168 ORTHO05D004999 4.4e-89 332.0 286 61.2
FAN20G1800 Fragaria x ananassa HOM05D004168 ORTHO05D004999 7.5e-89 331.3 287 61.0
MD08G1101200 Malus domestica HOM05D004168 ORTHO05D004999 2.2e-88 329.7 286 61.9
TAR628G1263 Trochodendron aralioides HOM05D004168 ORTHO05D004999 2.2e-88 329.7 285 60.0
RcHm_v2.0_Chr6g0307961 Rosa chinensis HOM05D004168 ORTHO05D004999 2.9e-88 329.3 287 61.3
FvH4_2g34410 Fragaria vesca HOM05D004168 ORTHO05D004999 8.3e-88 327.8 287 60.3
FAN24G2672 Fragaria x ananassa HOM05D004168 ORTHO05D004999 8.3e-88 327.8 287 60.3
PGR083G0647 Punica granatum HOM05D004168 ORTHO05D004999 1.9e-87 326.6 294 57.8
FAN15G2652 Fragaria x ananassa HOM05D004168 ORTHO05D004999 2.4e-87 326.2 288 60.1
COL.COLO4_26513 Corchorus olitorius HOM05D004168 ORTHO05D004999 4.1e-87 325.5 291 57.7
Manes.18G037500 Manihot esculenta HOM05D004168 ORTHO05D004999 1.6e-86 323.6 288 59.0
CANSAT25G0219 Cannabis sativa HOM05D004168 ORTHO05D004999 3.5e-86 322.4 280 57.9
Gohir.D05G205800 Gossypium hirsutum HOM05D004168 ORTHO05D004999 7.8e-86 321.2 292 57.9
Gorai.009G212100 Gossypium raimondii HOM05D004168 ORTHO05D004999 1.0e-85 320.9 292 57.9
GSVIVG01009491001 Vitis vinifera HOM05D004168 ORTHO05D004999 1.7e-85 320.1 284 56.3
Ciclev10002229m.g Citrus clementina HOM05D004168 ORTHO05D004999 3.9e-85 318.9 292 57.5
Gohir.A05G202600 Gossypium hirsutum HOM05D004168 ORTHO05D004999 3.9e-85 318.9 292 57.9
TAR376G0672 Trochodendron aralioides HOM05D004168 ORTHO05D004999 1.1e-84 317.4 283 58.3
Lj4A773T42 Lonicera japonica HOM05D004168 ORTHO05D004999 1.5e-84 317.0 293 53.9
arahy.Tifrunner.gnm1.ann1.TVNS6S Arachis hypogaea HOM05D004168 ORTHO05D004999 3.3e-84 315.8 286 57.0
TWI36G1266 Tripterygium wilfordii HOM05D004168 ORTHO05D004999 4.3e-84 315.5 288 57.6
Dinv35958 Davidia involucrata HOM05D004168 ORTHO05D004999 5.6e-84 315.1 279 58.4
Eucgr.F00224 Eucalyptus grandis HOM05D004168 ORTHO05D004999 5.6e-84 315.1 290 56.6
Duzib116G0163 Durio zibethinus HOM05D004168 ORTHO05D004999 9.5e-84 314.3 291 56.4
Cpa.g.sc13.291 Carica papaya HOM05D004168 ORTHO05D004999 1.6e-83 313.5 277 58.8
Rhsim06G0050100 Rhododendron simsii HOM05D004168 ORTHO05D004999 2.8e-83 312.8 289 57.4
Glyma.04G039100 Glycine max HOM05D004168 ORTHO05D004999 4.7e-83 312.0 293 56.0
Actinidia38059 Actinidia chinensis HOM05D004168 ORTHO05D004999 6.2e-83 311.6 288 56.6
Manes.05G174100 Manihot esculenta HOM05D004168 ORTHO05D004999 1.1e-82 310.8 285 56.8
Ca_15947_v3 Cicer arietinum L. HOM05D004168 ORTHO05D004999 4.0e-82 308.9 290 54.1
Nitab4.5_0002760g0060 Nicotiana tabacum HOM05D004168 ORTHO05D004999 5.2e-82 308.5 293 52.9
vmacro21519 Vaccinium macrocarpon HOM05D004168 ORTHO05D004999 6.8e-82 308.1 284 57.7
Medtr3g101750 Medicago truncatula HOM05D004168 ORTHO05D004999 1.2e-81 307.4 290 55.2
Gorai.010G019900 Gossypium raimondii HOM05D004168 ORTHO05D004999 1.5e-81 307.0 291 56.4
Actinidia29872 Actinidia chinensis HOM05D004168 ORTHO05D004999 2.0e-81 306.6 291 55.0
QL12p001799 Quercus lobata HOM05D004168 ORTHO05D004999 2.0e-81 306.6 278 58.3
Psat5g043040 Pisum sativum HOM05D004168 ORTHO05D004999 4.4e-81 305.4 292 55.8
Potri.002G126000 Populus trichocarpa HOM05D004168 ORTHO05D004999 5.8e-81 305.1 286 56.3
arahy.Tifrunner.gnm1.ann1.IT5IHR Arachis hypogaea HOM05D004168 ORTHO05D004999 7.5e-81 304.7 283 55.8
Gohir.D06G017000 Gossypium hirsutum HOM05D004168 ORTHO05D004999 9.8e-81 304.3 291 55.7
arahy.Tifrunner.gnm1.ann1.85Q9C5 Arachis hypogaea HOM05D004168 ORTHO05D004999 1.3e-80 303.9 283 55.8
Lj1g0018004 Lotus japonicus HOM05D004168 ORTHO05D004999 1.3e-80 303.9 290 54.1
THA.LOC104812820 Tarenaya hassleriana HOM05D004168 ORTHO05D004999 1.3e-80 303.9 286 53.5
GSVIVG01024177001 Vitis vinifera HOM05D004168 ORTHO05D004999 1.3e-80 303.9 249 61.8
Sabra02G0098700 Salix brachista HOM05D004168 ORTHO05D004999 1.7e-80 303.5 286 55.6
CSS0013402 Camellia sinensis var. sinensis HOM05D004168 ORTHO05D004999 2.2e-80 303.1 288 55.6
Lalb_Chr23g0267171 Lupinus albus HOM05D004168 ORTHO05D004999 2.2e-80 303.1 293 53.9
MBI15_g10497_MAGBIO Magnolia biondii HOM05D004168 ORTHO05D004999 2.2e-80 303.1 285 54.7
CARHR224370 Cardamine hirsuta HOM05D004168 ORTHO05D004999 2.9e-80 302.8 291 56.4
CSS0011562 Camellia sinensis var. sinensis HOM05D004168 ORTHO05D004999 3.7e-80 302.4 288 55.9
TPR.G24157 Trifolium pratense HOM05D004168 ORTHO05D004999 3.7e-80 302.4 290 54.5
VMungo1309G0269 Vigna mungo HOM05D004168 ORTHO05D004999 3.7e-80 302.4 284 54.9
Nitab4.5_0000287g0250 Nicotiana tabacum HOM05D004168 ORTHO05D004999 4.9e-80 302.0 299 52.8
MSTRG.1350 Avicennia marina HOM05D004168 ORTHO05D004999 1.4e-79 300.4 291 52.9
Glyma.06G040100 Glycine max HOM05D004168 ORTHO05D004999 1.4e-79 300.4 296 55.4
Aqoxy1G00522 Aquilegia oxysepala HOM05D004168 ORTHO05D004999 2.4e-79 299.7 285 53.7
Sopen04g032490 Solanum pennellii HOM05D004168 ORTHO05D004999 2.4e-79 299.7 289 52.6
Sc02g0007150 Simmondsia chinensis HOM05D004168 ORTHO05D004999 3.2e-79 299.3 290 54.1
Solyc04g078890.4 Solanum lycopersicum HOM05D004168 ORTHO05D004999 3.2e-79 299.3 291 53.3
Carub.0007s2373 Capsella rubella HOM05D004168 ORTHO05D004999 4.1e-79 298.9 292 53.8
Aa31LG6G400 Aethionema arabicum HOM05D004168 ORTHO05D004999 9.2e-79 297.7 287 55.1
CiPaw.12G069100 Carya illinoinensis HOM05D004168 ORTHO05D004999 1.2e-78 297.4 264 58.7
PGSC0003DMG401007971 Solanum tuberosum HOM05D004168 ORTHO05D004999 1.2e-78 297.4 288 52.1
DCAR_019452 Daucus carota HOM05D004168 ORTHO05D004999 7.8e-78 294.7 283 51.6
Thhalv10026045m.g Eutrema salsugineum HOM05D004168 ORTHO05D004999 1.0e-77 294.3 292 53.4
Sp7g16490 Schrenkiella parvula HOM05D004168 ORTHO05D004999 1.0e-77 294.3 292 53.4
AL7G36940 Arabidopsis lyrata HOM05D004168 ORTHO05D004999 1.3e-77 293.9 292 53.8
PSO384G0569 Papaver somniferum HOM05D004168 ORTHO05D004999 1.3e-77 293.9 289 53.3
Rhsim07G0228300 Rhododendron simsii HOM05D004168 ORTHO05D004999 1.3e-77 293.9 287 53.3
AT4G17650 Arabidopsis thaliana HOM05D004168 ORTHO05D004999 3.0e-77 292.7 292 52.7
Peaxi162Scf00252g00056 Petunia axillaris HOM05D004168 ORTHO05D004999 3.9e-77 292.4 293 52.9
CAN.G1030.1 Capsicum annuum HOM05D004168 ORTHO05D004999 5.1e-77 292.0 292 52.1
Migut.C00576 Erythranthe guttata HOM05D004168 ORTHO05D004999 5.1e-77 292.0 298 51.0
TWI56G0083 Tripterygium wilfordii HOM05D004168 ORTHO05D004999 6.6e-77 291.6 276 55.4
Cc10_g04130 Coffea canephora HOM05D004168 ORTHO05D004999 1.1e-76 290.8 219 66.2
MD15G1082400 Malus domestica HOM05D004168 ORTHO05D004999 2.5e-76 289.7 286 57.0
Oeu043572.2 Olea europaea HOM05D004168 ORTHO05D004999 4.3e-76 288.9 294 52.0
BraA01t00914Z Brassica rapa HOM05D004168 ORTHO05D004999 1.2e-75 287.3 289 52.9
BcaNung06715 Brassica carinata HOM05D004168 ORTHO05D004999 2.1e-75 286.6 289 52.9
CiPaw.11G099200 Carya illinoinensis HOM05D004168 ORTHO05D004999 2.8e-75 286.2 217 64.1
C01p11320 Brassica napus HOM05D004168 ORTHO05D004999 4.7e-75 285.4 288 52.8
BcaC09g51623 Brassica carinata HOM05D004168 ORTHO05D004999 1.4e-74 283.9 284 53.2
Lsat_1_v5_gn_1_21041 Lactuca sativa HOM05D004168 ORTHO05D004999 1.8e-74 283.5 295 50.8
SGA_v2.0_scaffold14G07004 Striga asiatica HOM05D004168 ORTHO05D004999 1.8e-74 283.5 263 54.4
BcaB04g18436 Brassica carinata HOM05D004168 ORTHO05D004999 4.0e-74 282.3 287 53.3
BcaNung00072 Brassica carinata HOM05D004168 ORTHO05D004999 5.2e-74 282.0 285 52.6
DCAR_012778 Daucus carota HOM05D004168 ORTHO05D004999 1.2e-73 280.8 288 51.4
PGR031G2881 Punica granatum HOM05D004168 ORTHO05D004999 2.0e-73 280.0 293 51.5
FAN27G1360 Fragaria x ananassa HOM05D004168 ORTHO05D004999 4.4e-73 278.9 150 87.3
HanXRQChr02g0039451 Helianthus annuus HOM05D004168 ORTHO05D004999 2.2e-72 276.6 290 50.3
EL10As14g24078 Beta vulgaris HOM05D004168 ORTHO05D004999 2.9e-72 276.2 286 50.0
A01p09710 Brassica napus HOM05D004168 ORTHO05D004999 3.7e-72 275.8 280 52.1
BolC1t01097H Brassica oleracea HOM05D001479 ORTHO05D001401 3.7e-72 275.8 276 53.3
EL10Ac9g21781 Beta vulgaris HOM05D004168 ORTHO05D004999 6.4e-72 275.0 286 50.3
Os01g0772400 Oryza sativa ssp. japonica HOM05D004168 ORTHO05D004999 6.4e-72 275.0 210 64.3
Hund06209 Selenicereus undatus HOM05D004168 ORTHO05D004999 1.9e-71 273.5 287 51.9
BraA08t33308Z Brassica rapa HOM05D004168 ORTHO05D004999 3.2e-71 272.7 286 50.7
AUR62011389 Chenopodium quinoa HOM05D004168 ORTHO05D004999 2.7e-70 269.6 286 50.0
AUR62016672 Chenopodium quinoa HOM05D004168 ORTHO05D004999 2.7e-70 269.6 286 50.3
unitig_19.g30012 Utricularia gibba HOM05D004168 ORTHO05D004999 2.7e-70 269.6 207 63.8
unitig_8.g5020 Utricularia gibba HOM05D004168 ORTHO05D004999 2.7e-70 269.6 207 63.8
Hund00296 Selenicereus undatus HOM05D004168 ORTHO05D004999 3.5e-70 269.2 291 50.5
Hund00303 Selenicereus undatus HOM05D004168 ORTHO05D004999 3.5e-70 269.2 291 50.5
DCAR_008795 Daucus carota HOM05D004168 ORTHO05D004999 6.0e-70 268.5 286 48.6
ECA247G0458 Erigeron canadensis HOM05D004168 ORTHO05D004999 6.0e-70 268.5 216 62.0
A08p13270 Brassica napus HOM05D004168 ORTHO05D004999 1.7e-69 266.9 221 58.8
HPP92_018641 Vanilla planifolia HOM05D004168 ORTHO05D004999 2.3e-69 266.5 255 54.9
Haze_17522 Corylus avellana HOM05D004168 ORTHO05D004999 1.9e-68 263.5 246 56.5
HanXRQChr09g0267591 Helianthus annuus HOM05D004168 ORTHO05D004999 1.9e-68 263.5 285 50.5
CDE06G0679 Ceratophyllum demersum HOM05D004168 ORTHO05D004999 7.3e-68 261.5 212 60.4
Aqoxy2G00574 Aquilegia oxysepala HOM05D004168 ORTHO05D004999 1.2e-67 260.8 216 58.8
Cfa018557 Carpinus fangiana HOM05D004168 ORTHO05D004999 1.2e-67 260.8 246 56.5
Ah.01g019770 Amaranthus hybridus HOM05D004168 ORTHO05D004999 3.6e-67 259.2 246 52.8
Lsat_1_v5_gn_4_125661 Lactuca sativa HOM05D004168 ORTHO05D004999 4.7e-67 258.8 272 50.4
Nn2g14539 Nelumbo nucifera HOM05D004168 ORTHO05D004999 2.4e-66 256.5 151 82.1
ECA232G1782 Erigeron canadensis HOM05D004168 ORTHO05D004999 5.2e-66 255.4 290 48.3
Gohir.A06G018666 Gossypium hirsutum HOM05D004168 ORTHO05D004999 2.0e-65 253.4 291 49.5
CANSAT11G0235 Cannabis sativa HOM05D004168 ORTHO05D004999 4.4e-65 252.3 284 48.9
MSTRG.22261 Avicennia marina HOM05D004168 ORTHO05D004999 2.2e-64 250.0 229 55.0
Cfa012532 Carpinus fangiana HOM05D004168 ORTHO05D002421 2.4e-63 246.5 266 51.5
BcaC07g38091 Brassica carinata HOM05D004168 ORTHO05D004999 1.3e-59 234.2 287 46.3
Eucgr.L02367 Eucalyptus grandis HOM05D004168 ORTHO05D004999 1.8e-58 230.3 287 46.0
Phvul.009G065300 Phaseolus vulgaris HOM05D004168 ORTHO05D004999 3.1e-58 229.6 244 50.0
Duzib093G1913 Durio zibethinus HOM05D004168 ORTHO05D004999 4.0e-58 229.2 291 47.1
SalBow7G4699 Salvia bowleyana HOM05D004168 ORTHO05D004999 6.9e-58 228.4 248 48.8
Eucgr.F02339 Eucalyptus grandis HOM05D004168 ORTHO05D004999 9.0e-58 228.0 285 46.7
Eucgr.F02343 Eucalyptus grandis HOM05D004168 ORTHO05D004999 3.4e-57 226.1 152 71.1
Zm00001eb370050 Zea mays HOM05D004168 ORTHO05D004999 1.7e-56 223.8 172 64.0
SEGI_05154 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 1.3e-51 207.6 144 65.3
Mapoly0004s0036 Marchantia polymorpha HOM05D004168 ORTHO05D004999 6.2e-51 205.3 146 61.6
SMO340G0178 Selaginella moellendorffii HOM05D004168 ORTHO05D004999 6.9e-50 201.8 144 63.2
Lalb_Chr11g0062631 Lupinus albus HOM05D004168 ORTHO05D004999 1.2e-49 201.1 111 83.8
AagrBONN_evm.TU.Sc2ySwM_228.4844 Anthoceros agrestis HOM05D004168 ORTHO05D004999 1.5e-49 200.7 148 62.8
Pp3c21_16730 Physcomitrium patens HOM05D004168 ORTHO05D004999 1.5e-49 200.7 146 62.3
CBR_g66636 Chara braunii HOM05D004168 ORTHO05D004999 1.9e-47 193.7 146 60.3
Pp3c22_1290 Physcomitrium patens HOM05D004168 ORTHO05D004999 7.9e-46 188.3 148 57.4
vmacro04448 Vaccinium macrocarpon HOM05D004168 ORTHO05D004999 7.9e-46 188.3 297 40.1
PSO339G0184 Papaver somniferum HOM05D004168 ORTHO05D004999 1.8e-45 187.2 289 39.8
arahy.Tifrunner.gnm1.ann1.F8YVUF Arachis hypogaea HOM05D004168 ORTHO05D004999 6.3e-35 152.1 143 55.2
arahy.Tifrunner.gnm1.ann1.ZKL3GY Arachis hypogaea HOM05D004168 ORTHO05D004999 8.5e-32 141.7 84 78.6
arahy.Tifrunner.gnm1.ann1.RZ37P0 Arachis hypogaea HOM05D004168 ORTHO05D004999 5.1e-29 132.5 253 35.6
Zm00001eb151870 Zea mays HOM05D004168 ORTHO05D004999 8.7e-29 131.7 130 53.8
SEGI_03271 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 3.3e-28 129.8 88 67.0
Cre07.g345700 Chlamydomonas reinhardtii HOM05D004168 ORTHO05D004999 5.3e-26 122.5 211 32.7
SEGI_12997 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 9.4e-23 111.7 131 46.6
arahy.Tifrunner.gnm1.ann1.H0AX16 Arachis hypogaea HOM05D004168 ORTHO05D004999 1.6e-22 110.9 73 71.2
Atru.chr13.696 Acer truncatum HOM05D004168 ORTHO05D004999 2.7e-22 110.2 63 81.0
Sc15g0006120 Simmondsia chinensis HOM05D004168 ORTHO05D003195 1.0e-21 108.2 65 75.4
MCO12G423 Micromonas commoda HOM05D004168 ORTHO05D004999 1.8e-21 107.5 141 39.0
Oeu049977.1 Olea europaea HOM05D004168 ORTHO05D004999 6.7e-21 105.5 74 66.2
AUR62007226 Chenopodium quinoa HOM05D004168 ORTHO05D004999 5.7e-20 102.4 141 42.6
arahy.Tifrunner.gnm1.ann1.TNR0C9 Arachis hypogaea HOM05D004168 ORTHO05D004999 1.7e-19 100.9 67 67.2
arahy.Tifrunner.gnm1.ann1.CBC9PR Arachis hypogaea HOM05D004168 ORTHO05D004999 6.9e-18 95.5 86 53.5
Lj6g0018320 Lotus japonicus HOM05D004168 ORTHO05D004999 5.5e-15 85.9 48 79.2
Gohir.A06G060332 Gossypium hirsutum HOM05D004168 ORTHO05D004999 7.9e-14 82.0 46 78.3
Gohir.D01G114560 Gossypium hirsutum HOM05D004168 ORTHO05D004999 4.4e-12 76.3 46 73.9
Gorai.002G139800 Gossypium raimondii HOM05D004168 ORTHO05D004999 4.4e-12 76.3 46 73.9
COL.COLO4_26873 Corchorus olitorius HOM05D004168 ORTHO05D004999 8.2e-11 72.0 39 76.9
Gohir.D06G118000 Gossypium hirsutum HOM05D004168 ORTHO05D004999 1.7e-08 64.3 43 69.8
Dinv39314 Davidia involucrata HOM05D003792 ORTHO05D003195 9.4e-07 58.5 91 37.4
MBI15_g33084_MAGBIO Magnolia biondii HOM05D001642 ORTHO05D002129 2.1e-06 57.4 36 66.7
arahy.Tifrunner.gnm1.ann1.T252JQ Arachis hypogaea HOM05D004168 ORTHO05D004999 4.7e-06 56.2 45 57.8


User provided reference genes

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