Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0009116 Sechium edule HOM05D005107 ORTHO05D006200 1.9e-195 685.6 338 100.0
ClCG01G013290 Citrullus lanatus HOM05D005107 ORTHO05D006200 6.1e-170 600.9 339 86.4
MELO3C002281.2 Cucumis melo HOM05D005107 ORTHO05D006200 5.1e-161 571.2 341 82.4
Sed0010155 Sechium edule HOM05D005107 ORTHO05D006200 1.4e-150 536.6 339 78.2
CsaV3_1G008660 Cucumis sativus L. HOM05D005107 ORTHO05D006200 1.4e-142 510.0 338 76.3
FvH4_5g05630 Fragaria vesca HOM05D005107 ORTHO05D006200 4.3e-107 392.1 341 58.7
Prupe.5G170500 Prunus persica HOM05D005107 ORTHO05D006200 4.3e-107 392.1 341 58.9
QL10p008945 Quercus lobata HOM05D005107 ORTHO05D006200 5.6e-107 391.7 343 58.6
MD14G1176600 Malus domestica HOM05D005107 ORTHO05D006200 6.8e-105 384.8 341 57.8
GSVIVG01007704001 Vitis vinifera HOM05D005107 ORTHO05D006200 8.3e-103 377.9 345 57.1
RcHm_v2.0_Chr7g0193181 Rosa chinensis HOM05D005107 ORTHO05D006200 1.5e-99 367.1 351 55.3
MD06G1170900 Malus domestica HOM05D005107 ORTHO05D006200 9.5e-99 364.4 340 55.3
CiPaw.11G023500 Carya illinoinensis HOM05D005107 ORTHO05D006200 1.2e-98 364.0 343 57.7
Atru.chr9.2518 Acer truncatum HOM05D005107 ORTHO05D006200 2.3e-97 359.8 346 55.8
Dinv20630 Davidia involucrata HOM05D005107 ORTHO05D006200 5.8e-96 355.1 344 55.2
Cpa.g.sc153.5 Carica papaya HOM05D005107 ORTHO05D006200 9.9e-96 354.4 345 53.0
TAR374G1030 Trochodendron aralioides HOM05D005107 ORTHO05D006200 1.3e-95 354.0 345 52.5
FAN18G1528 Fragaria x ananassa HOM05D005107 ORTHO05D006200 1.9e-94 350.1 341 55.4
Haze_07542 Corylus avellana HOM05D005107 ORTHO05D006200 3.2e-94 349.4 316 59.8
Potri.015G079700 Populus trichocarpa HOM05D005107 ORTHO05D006200 3.2e-94 349.4 346 52.6
Thecc.03G018700 Theobroma cacao HOM05D005107 ORTHO05D006200 4.1e-94 349.0 345 52.5
CSS0000196 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 5.4e-94 348.6 344 54.7
FAN04G1011 Fragaria x ananassa HOM05D005107 ORTHO05D006200 7.1e-94 348.2 341 54.8
FAN08G1807 Fragaria x ananassa HOM05D005107 ORTHO05D006200 3.9e-92 342.4 342 54.4
CANSAT80G2623 Cannabis sativa HOM05D005107 ORTHO05D006200 2.8e-90 336.3 342 51.2
Potri.012G088600 Populus trichocarpa HOM05D005107 ORTHO05D006200 1.1e-89 334.3 345 51.6
TAR622G1391 Trochodendron aralioides HOM05D005107 ORTHO05D006200 1.4e-89 334.0 345 51.9
Hma1.2p1_0592F.1_g185565 Hydrangea macrophylla HOM05D005107 ORTHO05D006200 2.4e-89 333.2 344 52.3
Sabra15G0104000 Salix brachista HOM05D005107 ORTHO05D006200 3.1e-89 332.8 355 49.3
Sabra12G0063800 Salix brachista HOM05D005107 ORTHO05D006200 4.0e-89 332.4 345 51.3
Ciclev10021009m.g Citrus clementina HOM05D005107 ORTHO05D006200 4.4e-88 328.9 347 52.4
Hma1.2p1_0046F.1_g026720 Hydrangea macrophylla HOM05D005107 ORTHO05D006200 4.4e-88 328.9 344 51.7
TWI23G1004 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 5.8e-88 328.6 344 49.7
Glyma.04G185700 Glycine max HOM05D005107 ORTHO05D006200 9.9e-88 327.8 340 50.3
COL.COLO4_30099 Corchorus olitorius HOM05D005107 ORTHO05D006200 1.3e-87 327.4 345 50.4
Manes.06G107100 Manihot esculenta HOM05D005107 ORTHO05D006200 1.7e-87 327.0 346 52.0
Lj4g0022030 Lotus japonicus HOM05D005107 ORTHO05D006200 4.9e-87 325.5 340 51.2
arahy.Tifrunner.gnm1.ann1.6379ZA Arachis hypogaea HOM05D005107 ORTHO05D006200 1.4e-86 323.9 341 48.7
arahy.Tifrunner.gnm1.ann1.5AH6W7 Arachis hypogaea HOM05D005107 ORTHO05D006200 1.9e-86 323.6 341 48.7
CSS0014290 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 2.4e-86 323.2 342 51.8
Lalb_Chr08g0236621 Lupinus albus HOM05D005107 ORTHO05D006200 2.4e-86 323.2 339 49.9
Lj1g0017341 Lotus japonicus HOM05D005107 ORTHO05D006200 4.2e-86 322.4 340 50.3
Glyma.06G180400 Glycine max HOM05D005107 ORTHO05D006200 2.7e-85 319.7 341 50.4
Gohir.A12G272600 Gossypium hirsutum HOM05D005107 ORTHO05D006200 7.8e-85 318.2 345 49.0
Gorai.008G293700 Gossypium raimondii HOM05D005107 ORTHO05D006200 1.0e-84 317.8 345 49.0
Gohir.D12G273300 Gossypium hirsutum HOM05D005107 ORTHO05D006200 1.3e-84 317.4 345 48.7
Duzib205G0074 Durio zibethinus HOM05D005107 ORTHO05D006200 2.3e-84 316.6 337 49.0
Eucgr.B00249 Eucalyptus grandis HOM05D005107 ORTHO05D006200 5.1e-84 315.5 346 50.0
Sp2g26180 Schrenkiella parvula HOM05D005107 ORTHO05D006200 8.7e-84 314.7 347 48.7
TWI14G0467 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 1.9e-83 313.5 344 47.7
VMungo1215G1987 Vigna mungo HOM05D005107 ORTHO05D006200 3.3e-83 312.8 334 49.7
Phvul.009G176100 Phaseolus vulgaris HOM05D005107 ORTHO05D006200 9.6e-83 311.2 340 47.9
BolC9t53818H Brassica oleracea HOM05D005107 ORTHO05D006200 2.8e-82 309.7 348 46.3
CSS0028022 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 2.8e-82 309.7 342 50.3
Nitab4.5_0001207g0070 Nicotiana tabacum HOM05D005107 ORTHO05D006200 4.8e-82 308.9 343 47.5
Phvul.003G202200 Phaseolus vulgaris HOM05D005107 ORTHO05D006200 4.8e-82 308.9 342 47.7
VMungo1309G0437 Vigna mungo HOM05D005107 ORTHO05D006200 6.2e-82 308.5 340 47.4
Sopen03g031750 Solanum pennellii HOM05D005107 ORTHO05D006200 1.1e-81 307.8 344 46.8
A09p08000 Brassica napus HOM05D005107 ORTHO05D006200 1.4e-81 307.4 339 46.9
Nn4g22685 Nelumbo nucifera HOM05D005107 ORTHO05D006200 2.4e-81 306.6 344 50.3
Nn4g22690 Nelumbo nucifera HOM05D005107 ORTHO05D006200 2.4e-81 306.6 344 50.3
Nn2g12593 Nelumbo nucifera HOM05D005107 ORTHO05D006200 5.3e-81 305.4 344 48.8
AL8G40070 Arabidopsis lyrata HOM05D005107 ORTHO05D006200 6.9e-81 305.1 347 47.6
Thhalv10004512m.g Eutrema salsugineum HOM05D005107 ORTHO05D006200 1.5e-80 303.9 347 47.3
Solyc03g112670.3 Solanum lycopersicum HOM05D005107 ORTHO05D006200 2.6e-80 303.1 344 46.8
FAN18G1595 Fragaria x ananassa HOM05D005107 ORTHO05D008464 4.5e-80 302.4 316 52.2
PGR083G1692 Punica granatum HOM05D005107 ORTHO05D006200 4.5e-80 302.4 348 48.0
Ca_21938_v3 Cicer arietinum L. HOM05D005107 ORTHO05D006200 1.3e-79 300.8 340 45.9
PGSC0003DMG401018164 Solanum tuberosum HOM05D005107 ORTHO05D006200 1.3e-79 300.8 344 46.2
Carub.0008s2376 Capsella rubella HOM05D005107 ORTHO05D006200 2.9e-79 299.7 347 46.1
C09p09050 Brassica napus HOM05D005107 ORTHO05D006200 6.4e-79 298.5 339 46.0
Migut.O00123 Erythranthe guttata HOM05D005107 ORTHO05D006200 4.2e-78 295.8 340 46.2
CARHR276850 Cardamine hirsuta HOM05D005107 ORTHO05D006200 5.4e-78 295.4 347 46.1
FAN13G2858 Fragaria x ananassa HOM05D005107 ORTHO05D008464 5.4e-78 295.4 316 51.3
Nitab4.5_0003229g0090 Nicotiana tabacum HOM05D005107 ORTHO05D006200 7.1e-78 295.0 325 47.4
AT5G63050 Arabidopsis thaliana HOM05D005107 ORTHO05D006200 9.3e-78 294.7 347 46.4
CAN.G1166.21 Capsicum annuum HOM05D005107 ORTHO05D006200 1.6e-77 293.9 344 45.6
Ca_16156_v3 Cicer arietinum L. HOM05D005107 ORTHO05D006200 2.7e-77 293.1 339 45.7
Psat4g058600 Pisum sativum HOM05D005107 ORTHO05D006200 7.9e-77 291.6 340 44.4
TPR.G37531 Trifolium pratense HOM05D005107 ORTHO05D006200 1.0e-76 291.2 340 45.6
ClCG06G017120 Citrullus lanatus HOM05D005107 ORTHO05D006200 3.0e-76 289.7 325 46.5
Gohir.D07G068200 Gossypium hirsutum HOM05D005107 ORTHO05D006200 3.0e-76 289.7 346 44.2
Gorai.001G071700 Gossypium raimondii HOM05D005107 ORTHO05D006200 5.1e-76 288.9 345 43.5
Peaxi162Scf00089g01740 Petunia axillaris HOM05D005107 ORTHO05D006200 6.7e-76 288.5 327 46.2
PSO063G3062 Papaver somniferum HOM05D005107 ORTHO05D006200 8.7e-76 288.1 347 47.3
Aa31LG11G620 Aethionema arabicum HOM05D005107 ORTHO05D006200 1.5e-75 287.3 338 45.3
Medtr4g105500 Medicago truncatula HOM05D005107 ORTHO05D006200 1.5e-75 287.3 331 45.6
PSO832G2872 Papaver somniferum HOM05D005107 ORTHO05D006200 1.9e-75 287.0 348 46.8
Sc22g0001200 Simmondsia chinensis HOM05D005107 ORTHO05D006200 5.6e-75 285.4 344 44.5
Cc06_g17290 Coffea canephora HOM05D005107 ORTHO05D006200 3.7e-74 282.7 335 48.7
BraA09t36452Z Brassica rapa HOM05D005107 ORTHO05D006200 4.8e-74 282.3 294 49.7
SalBow5G2679 Salvia bowleyana HOM05D005107 ORTHO05D006200 6.2e-74 282.0 346 45.1
Aqoxy3G02846 Aquilegia oxysepala HOM05D005107 ORTHO05D006200 8.1e-74 281.6 343 46.4
Manes.14G063800 Manihot esculenta HOM05D005107 ORTHO05D006200 8.1e-74 281.6 283 52.3
MBI10_g44387_MAGBIO Magnolia biondii HOM05D005107 ORTHO05D006200 1.4e-73 280.8 339 49.3
MSTRG.23144 Avicennia marina HOM05D005107 ORTHO05D006200 1.8e-73 280.4 345 45.5
Oeu016417.1 Olea europaea HOM05D005107 ORTHO05D006200 9.0e-73 278.1 329 45.3
THA.LOC104818212 Tarenaya hassleriana HOM05D005107 ORTHO05D006200 1.2e-72 277.7 345 43.5
TWI39G0316 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 2.0e-72 276.9 352 45.2
Psat5g115520 Pisum sativum HOM05D005107 ORTHO05D006200 3.4e-72 276.2 339 44.2
Ah.10g031930 Amaranthus hybridus HOM05D005107 ORTHO05D006200 7.6e-72 275.0 345 44.6
Medtr3g077490 Medicago truncatula HOM05D005107 ORTHO05D006200 9.9e-72 274.6 340 44.1
BcaB04g19949 Brassica carinata HOM05D005107 ORTHO05D006200 4.9e-71 272.3 293 49.1
Gohir.A07G063500 Gossypium hirsutum HOM05D005107 ORTHO05D006200 4.9e-71 272.3 345 42.3
TPR.G14919 Trifolium pratense HOM05D005107 ORTHO05D006200 1.1e-70 271.2 339 44.5
MELO3C026284.2 Cucumis melo HOM05D005107 ORTHO05D006200 5.5e-70 268.9 325 45.5
EL10Ac2g03054 Beta vulgaris HOM05D005107 ORTHO05D006200 2.3e-68 263.5 343 41.4
Actinidia19110 Actinidia chinensis HOM05D005107 ORTHO05D006200 5.1e-68 262.3 323 48.0
THA.LOC104821481 Tarenaya hassleriana HOM05D005107 ORTHO05D006200 6.7e-68 261.9 347 42.7
BraA06t25929Z Brassica rapa HOM05D005107 ORTHO05D006200 5.6e-67 258.8 348 43.1
Migut.D01962 Erythranthe guttata HOM05D005107 ORTHO05D006200 1.6e-66 257.3 342 42.7
Peaxi162Scf00255g00912 Petunia axillaris HOM05D005107 ORTHO05D006200 2.1e-66 256.9 345 39.7
A06p29810 Brassica napus HOM05D005107 ORTHO05D006200 3.7e-66 256.1 347 42.9
AUR62042560 Chenopodium quinoa HOM05D005107 ORTHO05D006200 6.2e-66 255.4 304 44.4
BolC3t18614H Brassica oleracea HOM05D005107 ORTHO05D006200 8.2e-66 255.0 347 42.7
AUR62018143 Chenopodium quinoa HOM05D005107 ORTHO05D006200 1.1e-65 254.6 307 44.0
Dinv38563 Davidia involucrata HOM05D003072 ORTHO05D008464 1.1e-65 254.6 260 52.3
SalBow6G4644 Salvia bowleyana HOM05D005107 ORTHO05D006200 1.1e-65 254.6 347 40.1
HanXRQChr05g0154601 Helianthus annuus HOM05D005107 ORTHO05D006200 5.3e-65 252.3 351 45.6
BolC8t50877H Brassica oleracea HOM05D005107 ORTHO05D006200 6.9e-65 251.9 348 43.1
C08p32660 Brassica napus HOM05D005107 ORTHO05D006200 4.9e-63 245.7 335 43.6
CiPaw.12G028400 Carya illinoinensis HOM05D005107 ORTHO05D006200 1.1e-62 244.6 332 43.4
unitig_26.g9615 Utricularia gibba HOM05D005107 ORTHO05D006200 1.5e-59 234.2 292 43.8
CDE05G1562 Ceratophyllum demersum HOM05D005107 ORTHO05D006200 7.4e-59 231.9 283 47.0
BcaC01g02550 Brassica carinata HOM05D005107 ORTHO05D006200 1.3e-58 231.1 347 40.9
DCAR_016047 Daucus carota HOM05D005107 ORTHO05D006200 2.1e-58 230.3 342 38.0
HanXRQChr08g0235041 Helianthus annuus HOM05D005107 ORTHO05D006200 4.8e-58 229.2 345 40.6
Lj9C446G12 Lonicera japonica HOM05D004430 ORTHO05D005088 2.4e-57 226.9 343 39.7
ECA246G1934 Erigeron canadensis HOM05D005107 ORTHO05D006200 3.1e-57 226.5 339 41.6
Lj5A126T86 Lonicera japonica HOM05D005107 ORTHO05D006200 2.5e-54 216.9 277 44.8
Lsat_1_v5_gn_5_15301 Lactuca sativa HOM05D005107 ORTHO05D006200 1.5e-51 207.6 348 38.2
Oeu024703.1 Olea europaea HOM05D005107 ORTHO05D006200 2.6e-48 196.8 197 50.3
Eucgr.J01240 Eucalyptus grandis HOM05D005107 ORTHO05D006200 2.2e-47 193.7 137 63.5
C03p63570 Brassica napus HOM05D005107 ORTHO05D006200 3.8e-47 193.0 304 39.8
Hund13172 Selenicereus undatus HOM05D005107 ORTHO05D006200 1.9e-46 190.7 337 34.1
ECA232G4933 Erigeron canadensis HOM05D005107 ORTHO05D006200 4.2e-46 189.5 341 38.7
Eucgr.C04410 Eucalyptus grandis HOM05D005107 ORTHO05D006200 5.7e-43 179.1 137 59.9
SGA_v2.0_scaffold90G27886 Striga asiatica HOM05D005107 ORTHO05D006200 7.4e-43 178.7 213 42.7
Eucgr.C03135 Eucalyptus grandis HOM05D005107 ORTHO05D006200 1.3e-42 177.9 129 61.2
HPP92_001300 Vanilla planifolia HOM05D005107 ORTHO05D006200 6.3e-42 175.6 212 42.5
ECA232G2224 Erigeron canadensis HOM05D005107 ORTHO05D006200 1.1e-41 174.9 220 45.5
BcaB02g09719 Brassica carinata HOM05D005107 ORTHO05D006200 6.1e-37 159.1 339 33.9
BcaC04g23368 Brassica carinata HOM05D005107 ORTHO05D006200 4.7e-29 132.9 103 61.2
HanXRQChr02g0035961 Helianthus annuus HOM05D005107 ORTHO05D006200 3.0e-28 130.2 287 32.8
Lsat_1_v5_gn_1_28200 Lactuca sativa HOM05D005107 ORTHO05D006200 5.3e-25 119.4 160 38.8
Duzib068G0452 Durio zibethinus HOM05D005107 ORTHO05D006200 1.2e-13 81.6 129 41.9
ATR1152G005 Amborella trichopoda HOM05D005107 ORTHO05D006200 1.4e-12 78.2 203 27.1
SEGI_21940 Sequoiadendron giganteum HOM05D024261 ORTHO05D006200 6.8e-12 75.9 273 28.2
Mapoly0031s0052 Marchantia polymorpha HOM05D024261 ORTHO05D026617 2.9e-07 60.5 173 28.3
AagrBONN_evm.TU.Sc2ySwM_362.2194 Anthoceros agrestis HOM05D024261 ORTHO05D026617 2.5e-06 57.4 223 25.1
Hma1.2p1_0522F.1_g171880 Hydrangea macrophylla HOM05D005107 ORTHO05D006200 7.3e-06 55.8 39 64.1


User provided reference genes

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