Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0009104 Sechium edule HOM05D006715 ORTHO05D008345 0.0e+00 1320.8 650 100.0
ClCG08G002210 Citrullus lanatus HOM05D006715 ORTHO05D008345 1.9e-236 822.8 657 67.6
MELO3C025024.2 Cucumis melo HOM05D006715 ORTHO05D008345 7.7e-222 774.2 664 64.5
CsaV3_6G002600 Cucumis sativus L. HOM05D006715 ORTHO05D008345 1.1e-180 637.5 541 65.2
Cfa018312 Carpinus fangiana HOM05D006715 ORTHO05D008345 1.3e-152 544.3 675 48.9
QL09p013340 Quercus lobata HOM05D006715 ORTHO05D008345 1.0e-136 491.5 665 44.8
RcHm_v2.0_Chr6g0275051 Rosa chinensis HOM05D006715 ORTHO05D008345 4.6e-134 482.6 687 44.3
Lj2g0009741 Lotus japonicus HOM05D006715 ORTHO05D008345 6.7e-133 478.8 668 45.5
Thecc.08G154500 Theobroma cacao HOM05D006715 ORTHO05D008345 2.5e-132 476.9 685 44.2
CANSAT25G3857 Cannabis sativa HOM05D006715 ORTHO05D008345 5.7e-132 475.7 700 45.4
Manes.02G180601 Manihot esculenta HOM05D006715 ORTHO05D008345 1.3e-131 474.6 687 44.4
TWI34G0194 Tripterygium wilfordii HOM05D006715 ORTHO05D008345 6.2e-131 472.2 720 43.5
Medtr2g045070 Medicago truncatula HOM05D006715 ORTHO05D008345 1.1e-130 471.5 661 45.8
arahy.Tifrunner.gnm1.ann1.SG7PGU Arachis hypogaea HOM05D006715 ORTHO05D008345 1.4e-130 471.1 702 44.3
arahy.Tifrunner.gnm1.ann1.6MC3QX Arachis hypogaea HOM05D006715 ORTHO05D008345 9.0e-130 468.4 683 44.5
Atru.chr13.2084 Acer truncatum HOM05D006715 ORTHO05D008345 2.0e-129 467.2 651 45.9
MD05G1027900 Malus domestica HOM05D006715 ORTHO05D008345 4.5e-129 466.1 692 43.2
FvH4_2g13430 Fragaria vesca HOM05D006715 ORTHO05D008345 5.8e-129 465.7 687 44.0
PGR042G1662 Punica granatum HOM05D006715 ORTHO05D008345 1.0e-128 464.9 680 45.6
FAN24G1213 Fragaria x ananassa HOM05D006715 ORTHO05D008345 2.2e-128 463.8 687 43.8
Ciclev10000601m.g Citrus clementina HOM05D006715 ORTHO05D008345 7.1e-127 458.8 662 44.9
CiPaw.16G011000 Carya illinoinensis HOM05D006715 ORTHO05D008345 6.7e-125 452.2 634 45.4
Gorai.010G134600 Gossypium raimondii HOM05D006715 ORTHO05D008345 2.5e-124 450.3 668 43.0
TAR381G1273 Trochodendron aralioides HOM05D006715 ORTHO05D008345 8.2e-123 445.3 706 41.1
Potri.005G193500 Populus trichocarpa HOM05D006715 ORTHO05D008345 1.1e-122 444.9 670 44.0
Duzib093G1010 Durio zibethinus HOM05D006715 ORTHO05D008345 1.8e-122 444.1 671 41.7
Psat1g102000 Pisum sativum HOM05D006715 ORTHO05D008345 1.8e-122 444.1 664 43.5
Prupe.8G033600 Prunus persica HOM05D006715 ORTHO05D008345 3.1e-122 443.4 704 42.3
Phvul.004G094200 Phaseolus vulgaris HOM05D006715 ORTHO05D008345 4.1e-122 443.0 665 43.6
Gohir.A06G112504 Gossypium hirsutum HOM05D006715 ORTHO05D008345 2.6e-121 440.3 656 43.6
VMungo0464G1764 Vigna mungo HOM05D006715 ORTHO05D008345 4.5e-121 439.5 681 42.6
Actinidia17784 Actinidia chinensis HOM05D006715 ORTHO05D008345 3.2e-119 433.3 689 42.7
Cpa.g.sc1027.1 Carica papaya HOM05D006715 ORTHO05D008345 4.2e-119 433.0 661 44.0
Lj7A376T34 Lonicera japonica HOM05D006715 ORTHO05D008345 2.2e-115 420.6 684 41.5
THA.LOC104804670 Tarenaya hassleriana HOM05D006715 ORTHO05D008345 8.2e-115 418.7 664 39.9
Nitab4.5_0001187g0100 Nicotiana tabacum HOM05D006715 ORTHO05D008345 2.4e-114 417.2 695 41.0
RcHm_v2.0_Chr5g0050861 Rosa chinensis HOM05D006715 ORTHO05D008345 7.2e-111 405.6 574 43.9
Nn5g28769 Nelumbo nucifera HOM05D006715 ORTHO05D008345 4.4e-108 396.4 715 39.4
Aqoxy5G00857 Aquilegia oxysepala HOM05D006715 ORTHO05D008345 7.4e-108 395.6 681 39.8
Rhsim05G0181200 Rhododendron simsii HOM05D006715 ORTHO05D008345 7.4e-108 395.6 557 44.0
CAN.G1215.10 Capsicum annuum HOM05D006715 ORTHO05D008345 1.7e-107 394.4 687 39.2
COL.COLO4_29857 Corchorus olitorius HOM05D006715 ORTHO05D008345 2.2e-107 394.0 511 46.0
Eucgr.F02698 Eucalyptus grandis HOM05D006715 ORTHO05D008345 8.2e-107 392.1 696 39.4
Hund26691 Selenicereus undatus HOM05D006715 ORTHO05D008345 1.8e-106 391.0 692 40.0
FAN27G2814 Fragaria x ananassa HOM05D006715 ORTHO05D008345 3.1e-106 390.2 570 45.6
Glyma.16G166500 Glycine max HOM05D006715 ORTHO05D008345 4.1e-106 389.8 663 40.4
Sopen04g027550 Solanum pennellii HOM05D006715 ORTHO05D008345 2.9e-104 383.6 694 38.0
Peaxi162Scf00599g00121 Petunia axillaris HOM05D006715 ORTHO05D008345 2.5e-103 380.6 634 41.3
AL1G51600 Arabidopsis lyrata HOM05D006715 ORTHO05D008345 1.2e-102 378.3 647 39.3
Lsat_1_v5_gn_9_41180 Lactuca sativa HOM05D006715 ORTHO05D008345 1.6e-102 377.9 663 38.6
TPR.G23114 Trifolium pratense HOM05D006715 ORTHO05D008345 2.3e-101 374.0 506 43.3
Sp1g32410 Schrenkiella parvula HOM05D006715 ORTHO05D008345 5.2e-101 372.9 648 38.0
vmacro20039 Vaccinium macrocarpon HOM05D006715 ORTHO05D008345 5.2e-101 372.9 669 39.3
SGA_v2.0_scaffold25G11186 Striga asiatica HOM05D006715 ORTHO05D008345 2.6e-100 370.5 693 37.2
Migut.N03207 Erythranthe guttata HOM05D006715 ORTHO05D008345 1.3e-99 368.2 696 37.5
ECA232G1953 Erigeron canadensis HOM05D006715 ORTHO05D008345 3.7e-99 366.7 655 39.4
GSVIVG01034549001 Vitis vinifera HOM05D006715 ORTHO05D008345 1.4e-98 364.8 523 43.4
AT1G43245 Arabidopsis thaliana HOM05D006715 ORTHO05D008345 4.5e-97 359.8 651 37.6
Thhalv10003905m.g Eutrema salsugineum HOM05D006715 ORTHO05D008345 7.7e-97 359.0 652 37.6
Aa31LG6G9940 Aethionema arabicum HOM05D006715 ORTHO05D008345 2.5e-95 354.0 693 37.2
BcaB01g02294 Brassica carinata HOM05D006715 ORTHO05D008345 2.1e-94 350.9 652 37.9
Haze_17767 Corylus avellana HOM05D006715 ORTHO05D008345 6.1e-94 349.4 409 49.1
PSO675G4790 Papaver somniferum HOM05D006715 ORTHO05D008345 2.6e-92 344.0 704 37.2
DCAR_010095 Daucus carota HOM05D006715 ORTHO05D008345 1.7e-91 341.3 509 41.5
MSTRG.24217 Avicennia marina HOM05D006715 ORTHO05D008345 8.3e-91 339.0 752 35.2
HanXRQChr11g0320291 Helianthus annuus HOM05D006715 ORTHO05D008345 2.9e-88 330.5 673 37.4
BcaC04g24108 Brassica carinata HOM05D006715 ORTHO05D008345 6.5e-88 329.3 649 37.8
Gohir.D06G116900 Gossypium hirsutum HOM05D006715 ORTHO05D008345 1.9e-87 327.8 455 45.3
unitig_21.g20147 Utricularia gibba HOM05D006715 ORTHO05D008345 3.1e-82 310.5 695 35.1
Dinv41067 Davidia involucrata HOM05D006715 ORTHO05D008345 1.3e-80 305.1 367 50.7
SalBow6G6609 Salvia bowleyana HOM05D006715 ORTHO05D008345 6.6e-80 302.8 685 35.3
EL10Ac1g01568 Beta vulgaris HOM05D006715 ORTHO05D008345 1.9e-79 301.2 659 35.7
Ca_26954_v3 Cicer arietinum L. HOM05D006715 ORTHO05D008345 3.3e-79 300.4 522 42.5
BolC9t53031H Brassica oleracea HOM05D006715 ORTHO05D008345 1.2e-78 298.5 572 37.6
A09p00880 Brassica napus HOM05D006715 ORTHO05D008345 2.3e-77 294.3 569 37.6
C09p00980 Brassica napus HOM05D006715 ORTHO05D008345 3.0e-77 293.9 565 37.9
ATR0820G173 Amborella trichopoda HOM05D006715 ORTHO05D008345 4.0e-77 293.5 706 34.7
BraA09t35760Z Brassica rapa HOM05D006715 ORTHO05D008345 8.9e-77 292.4 569 37.4
CDE12G0089 Ceratophyllum demersum HOM05D006715 ORTHO05D008345 1.3e-75 288.5 674 32.9
SHI09071 Sapria himalayana HOM05D006715 ORTHO05D008345 4.1e-74 283.5 753 33.1
Zm00001eb083170 Zea mays HOM05D006715 ORTHO05D008345 1.5e-68 265.0 684 31.7
Os04g0423600 Oryza sativa ssp. japonica HOM05D006715 ORTHO05D008345 6.4e-67 259.6 691 30.8
CARHR035370 Cardamine hirsuta HOM05D006715 ORTHO05D008345 1.6e-65 255.0 409 39.6
PGSC0003DMG400024094 Solanum tuberosum HOM05D006715 ORTHO05D008345 4.6e-65 253.4 404 38.4
Lalb_Chr01g0009561 Lupinus albus HOM05D006715 ORTHO05D008345 2.3e-64 251.1 318 45.6
AUR62026687 Chenopodium quinoa HOM05D006715 ORTHO05D008345 9.8e-60 235.7 335 40.9
Cc10_g14930 Coffea canephora HOM05D006715 ORTHO05D008345 8.3e-59 232.6 340 46.5
Nitab4.5_0002764g0020 Nicotiana tabacum HOM05D006715 ORTHO05D008345 3.9e-56 223.8 376 38.3
Lalb_Chr01g0009551 Lupinus albus HOM05D006715 ORTHO05D008345 2.3e-48 198.0 316 42.7
Lj2g0026984 Lotus japonicus HOM05D006715 ORTHO05D008345 3.0e-48 197.6 215 54.9
AUR62040600 Chenopodium quinoa HOM05D006715 ORTHO05D008345 6.6e-48 196.4 348 36.8
MBI17_g41095_MAGBIO Magnolia biondii HOM05D006715 ORTHO05D008345 4.3e-47 193.7 359 39.3
TAR381G1110 Trochodendron aralioides HOM05D006715 ORTHO05D008345 4.3e-47 193.7 320 39.1
CSS0020422 Camellia sinensis var. sinensis HOM05D006715 ORTHO05D008345 4.7e-46 190.3 266 44.0
Potri.005G193701 Populus trichocarpa HOM05D006715 ORTHO05D008345 1.1e-45 189.1 316 38.0
Carub.0001s3453 Capsella rubella HOM05D006715 ORTHO05D008345 1.7e-43 181.8 375 34.7
Sc02g0003950 Simmondsia chinensis HOM05D006715 ORTHO05D008345 4.2e-42 177.2 226 45.1
HPP92_009296 Vanilla planifolia HOM05D006715 ORTHO05D008345 4.2e-42 177.2 342 36.5
Glyma.16G166333 Glycine max HOM05D006715 ORTHO05D008345 5.4e-42 176.8 264 40.2
Glyma.16G166267 Glycine max HOM05D006715 ORTHO05D008345 7.1e-42 176.4 235 47.2
Carub.0001s3454 Capsella rubella HOM05D006715 ORTHO05D008345 1.1e-37 162.5 214 43.9
Oeu031098.1 Olea europaea HOM05D006715 ORTHO05D008345 5.8e-36 156.8 383 34.5
SEGI_11470 Sequoiadendron giganteum HOM05D006715 ORTHO05D008345 9.9e-36 156.0 361 35.5
CSS0028068 Camellia sinensis var. sinensis HOM05D006715 ORTHO05D008345 2.5e-31 141.4 262 39.7
HPP92_009297 Vanilla planifolia HOM05D006715 ORTHO05D008345 6.4e-27 126.7 301 30.6
SEGI_34185 Sequoiadendron giganteum HOM05D006715 ORTHO05D008345 9.6e-23 112.8 247 32.4
Medtr3g062560 Medicago truncatula HOM05D006715 ORTHO05D008345 1.3e-22 112.5 174 47.1
CSS0046539 Camellia sinensis var. sinensis HOM05D006715 ORTHO05D008345 2.8e-22 111.3 132 47.7
Gohir.1Z049355 Gossypium hirsutum HOM05D006715 ORTHO05D008345 9.0e-21 106.3 132 46.2
SEGI_20433 Sequoiadendron giganteum HOM05D006715 ORTHO05D008345 3.5e-17 94.4 258 34.9
CSS0020713 Camellia sinensis var. sinensis HOM05D006715 ORTHO05D008345 2.3e-08 65.1 129 36.4
PRCOL_00006858 Prasinoderma coloniale HOM05D004492 ORTHO05D005602 2.8e-06 58.2 136 25.7


User provided reference genes

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