Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0009082 Sechium edule HOM05D004828 ORTHO05D005713 2.0e-62 242.3 124 100.0
ClCG06G007210 Citrullus lanatus HOM05D004828 ORTHO05D005713 2.4e-47 192.2 128 79.7
MELO3C023036.2 Cucumis melo HOM05D004828 ORTHO05D005713 1.5e-46 189.5 128 78.1
CsaV3_2G012500 Cucumis sativus L. HOM05D004828 ORTHO05D005713 1.5e-46 189.5 128 78.1
CSS0013271 Camellia sinensis var. sinensis HOM05D004828 ORTHO05D005713 8.5e-45 183.7 126 79.4
CSS0001982 Camellia sinensis var. sinensis HOM05D004828 ORTHO05D005713 1.9e-44 182.6 127 75.6
Oeu059400.1 Olea europaea HOM05D004828 ORTHO05D005713 1.2e-43 179.9 122 76.2
GSVIVG01027902001 Vitis vinifera HOM05D004828 ORTHO05D005713 1.2e-43 179.9 126 74.6
Dinv27097 Davidia involucrata HOM05D004828 ORTHO05D005713 3.6e-43 178.3 125 72.8
Rhsim04G0173400 Rhododendron simsii HOM05D004828 ORTHO05D005713 4.6e-43 177.9 130 74.6
CiPaw.01G179200 Carya illinoinensis HOM05D004828 ORTHO05D005713 6.1e-43 177.6 125 76.0
Cpa.g.sc44.12 Carica papaya HOM05D004828 ORTHO05D005713 1.4e-42 176.4 124 74.2
QL06p020769 Quercus lobata HOM05D004828 ORTHO05D005713 1.4e-42 176.4 124 73.4
TAR362G0439 Trochodendron aralioides HOM05D004828 ORTHO05D005713 1.4e-42 176.4 125 73.6
MD16G1225200 Malus domestica HOM05D004828 ORTHO05D005713 1.8e-42 176.0 122 77.0
RcHm_v2.0_Chr4g0394991 Rosa chinensis HOM05D004828 ORTHO05D005713 1.8e-42 176.0 125 73.6
FvH4_4g04430 Fragaria vesca HOM05D004828 ORTHO05D005713 2.3e-42 175.6 125 73.6
FAN17G1436 Fragaria x ananassa HOM05D004828 ORTHO05D005713 2.3e-42 175.6 125 73.6
Haze_11447 Corylus avellana HOM05D004828 ORTHO05D005713 3.0e-42 175.3 125 75.2
Glyma.10G136300 Glycine max HOM05D004828 ORTHO05D005713 3.0e-42 175.3 127 73.2
Glyma.20G085900 Glycine max HOM05D004828 ORTHO05D005713 3.0e-42 175.3 127 73.2
Thecc.04G262300 Theobroma cacao HOM05D004828 ORTHO05D005713 3.0e-42 175.3 125 72.8
VMungo0720G1886 Vigna mungo HOM05D004828 ORTHO05D005713 3.0e-42 175.3 127 74.0
Cfa014773 Carpinus fangiana HOM05D004828 ORTHO05D005713 3.9e-42 174.9 125 75.2
MELO3C006384.2 Cucumis melo HOM05D004828 ORTHO05D005713 3.9e-42 174.9 125 72.0
Gohir.D01G023418 Gossypium hirsutum HOM05D004828 ORTHO05D005713 3.9e-42 174.9 126 72.2
MD13G1219800 Malus domestica HOM05D004828 ORTHO05D005713 3.9e-42 174.9 122 76.2
COL.COLO4_15949 Corchorus olitorius HOM05D004828 ORTHO05D005713 5.1e-42 174.5 125 73.6
CsaV3_3G011780 Cucumis sativus L. HOM05D004828 ORTHO05D005713 5.1e-42 174.5 125 72.0
Potri.008G171000 Populus trichocarpa HOM05D004828 ORTHO05D005713 5.1e-42 174.5 125 72.8
vmacro08545 Vaccinium macrocarpon HOM05D004828 ORTHO05D005713 6.7e-42 174.1 129 72.9
Eucgr.H02963 Eucalyptus grandis HOM05D004828 ORTHO05D005713 8.8e-42 173.7 126 73.8
Phvul.007G271000 Phaseolus vulgaris HOM05D004828 ORTHO05D005713 1.1e-41 173.3 127 73.2
Oeu055253.1 Olea europaea HOM05D004828 ORTHO05D005713 1.5e-41 172.9 123 74.8
Prupe.1G046500 Prunus persica HOM05D004828 ORTHO05D005713 1.5e-41 172.9 125 72.0
BcaC01g03156 Brassica carinata HOM05D004828 ORTHO05D005713 2.0e-41 172.6 130 71.5
Cc03_g06030 Coffea canephora HOM05D004828 ORTHO05D005713 2.0e-41 172.6 126 70.6
Gorai.002G026400 Gossypium raimondii HOM05D004828 ORTHO05D005713 2.0e-41 172.6 126 71.4
Lj6g0012692 Lotus japonicus HOM05D004828 ORTHO05D005713 2.0e-41 172.6 125 73.6
A03p44660 Brassica napus HOM05D004828 ORTHO05D005713 3.3e-41 171.8 132 71.2
BraA03t13600Z Brassica rapa HOM05D004828 ORTHO05D005713 3.3e-41 171.8 132 71.2
Hma1.2p1_0112F.1_g054580 Hydrangea macrophylla HOM05D004828 ORTHO05D005713 3.3e-41 171.8 125 72.8
Lsat_1_v5_gn_1_75300 Lactuca sativa HOM05D004828 ORTHO05D005713 3.3e-41 171.8 128 74.2
BcaB08g34505 Brassica carinata HOM05D004828 ORTHO05D005713 4.3e-41 171.4 128 70.3
Sp3g24080 Schrenkiella parvula HOM05D004828 ORTHO05D005713 4.3e-41 171.4 131 70.2
Duzib212G0408 Durio zibethinus HOM05D004828 ORTHO05D005713 5.7e-41 171.0 129 70.5
Aqoxy5G00162 Aquilegia oxysepala HOM05D004828 ORTHO05D005713 7.4e-41 170.6 125 75.2
Carub.0003s2689 Capsella rubella HOM05D004828 ORTHO05D005713 7.4e-41 170.6 126 73.8
Medtr1g045140 Medicago truncatula HOM05D004828 ORTHO05D005713 9.7e-41 170.2 128 73.4
TAR365G0027 Trochodendron aralioides HOM05D004828 ORTHO05D005713 9.7e-41 170.2 123 74.0
Actinidia35812 Actinidia chinensis HOM05D004828 ORTHO05D005713 1.3e-40 169.9 125 72.8
C03p55490 Brassica napus HOM05D004828 ORTHO05D005713 1.3e-40 169.9 131 71.0
BolC3t17826H Brassica oleracea HOM05D004828 ORTHO05D005713 1.3e-40 169.9 131 71.0
Thhalv10002723m.g Eutrema salsugineum HOM05D004828 ORTHO05D005713 1.3e-40 169.9 131 69.5
PSO674G0081 Papaver somniferum HOM05D004828 ORTHO05D005713 1.3e-40 169.9 124 72.6
PSO832G3336 Papaver somniferum HOM05D004828 ORTHO05D005713 1.3e-40 169.9 124 72.6
Rhsim02G0043000 Rhododendron simsii HOM05D004828 ORTHO05D005713 1.3e-40 169.9 124 72.6
Aqoxy2G03727 Aquilegia oxysepala HOM05D004828 ORTHO05D005713 1.7e-40 169.5 129 68.2
Psat6g106280 Pisum sativum HOM05D004828 ORTHO05D005713 1.7e-40 169.5 128 72.7
Actinidia39923 Actinidia chinensis HOM05D004828 ORTHO05D005713 2.2e-40 169.1 128 72.7
THA.LOC104808875 Tarenaya hassleriana HOM05D004828 ORTHO05D005713 2.2e-40 169.1 132 74.2
vmacro15472 Vaccinium macrocarpon HOM05D004828 ORTHO05D005713 3.7e-40 168.3 124 72.6
AL3G43120 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 6.3e-40 167.5 131 73.3
Ca_11922_v3 Cicer arietinum L. HOM05D004828 ORTHO05D005713 6.3e-40 167.5 127 70.9
Migut.G00486 Erythranthe guttata HOM05D004828 ORTHO05D005713 6.3e-40 167.5 115 76.5
AT2G05620 Arabidopsis thaliana HOM05D004828 ORTHO05D005713 8.2e-40 167.2 134 71.6
HanXRQChr11g0343071 Helianthus annuus HOM05D004828 ORTHO05D005713 1.1e-39 166.8 128 70.3
Hma1.2p1_0385F.1_g141490 Hydrangea macrophylla HOM05D004828 ORTHO05D005713 1.1e-39 166.8 125 72.0
arahy.Tifrunner.gnm1.ann1.DHUA7P Arachis hypogaea HOM05D004828 ORTHO05D005713 1.4e-39 166.4 125 72.0
arahy.Tifrunner.gnm1.ann1.P56WT2 Arachis hypogaea HOM05D004828 ORTHO05D005713 1.4e-39 166.4 125 72.0
BcaB06g26846 Brassica carinata HOM05D004828 ORTHO05D005713 1.4e-39 166.4 130 69.2
Dinv29813 Davidia involucrata HOM05D004828 ORTHO05D005713 1.4e-39 166.4 128 71.1
PGR004G2594 Punica granatum HOM05D004828 ORTHO05D005713 1.4e-39 166.4 128 70.3
THA.LOC104826602 Tarenaya hassleriana HOM05D004828 ORTHO05D005713 1.8e-39 166.0 129 70.5
HanXRQChr01g0022921 Helianthus annuus HOM05D004828 ORTHO05D005713 2.4e-39 165.6 129 71.3
Lsat_1_v5_gn_6_68641 Lactuca sativa HOM05D004828 ORTHO05D005713 2.4e-39 165.6 114 76.3
SGA_v2.0_scaffold31G12643 Striga asiatica HOM05D004828 ORTHO05D005713 2.4e-39 165.6 118 72.0
ECA248G3746 Erigeron canadensis HOM05D002764 ORTHO05D002960 3.1e-39 165.2 118 74.6
Lalb_Chr01g0020281 Lupinus albus HOM05D004828 ORTHO05D005713 3.1e-39 165.2 114 75.4
Potri.010G066900 Populus trichocarpa HOM05D004828 ORTHO05D005713 3.1e-39 165.2 126 69.0
TPR.G23990 Trifolium pratense HOM05D004828 ORTHO05D005713 4.1e-39 164.9 125 72.0
Lalb_Chr19g0128491 Lupinus albus HOM05D004828 ORTHO05D005713 5.3e-39 164.5 113 74.3
Sabra08G0130800 Salix brachista HOM05D004828 ORTHO05D005713 5.3e-39 164.5 125 70.4
MSTRG.4162 Avicennia marina HOM05D004828 ORTHO05D005713 6.9e-39 164.1 115 73.9
Migut.N00294 Erythranthe guttata HOM05D004828 ORTHO05D005713 2.0e-38 162.5 115 71.3
Manes.03G160100 Manihot esculenta HOM05D004828 ORTHO05D005713 2.6e-38 162.2 125 72.0
HanXRQChr02g0059331 Helianthus annuus HOM05D004828 ORTHO05D005713 3.4e-38 161.8 115 75.7
CiPaw.02G107900 Carya illinoinensis HOM05D004828 ORTHO05D005713 4.5e-38 161.4 122 73.0
Ciclev10006216m.g Citrus clementina HOM05D004828 ORTHO05D005713 5.9e-38 161.0 128 69.5
BcaC06g35923 Brassica carinata HOM05D004828 ORTHO05D005713 7.7e-38 160.6 130 66.9
C07p09630 Brassica napus HOM05D004828 ORTHO05D005713 7.7e-38 160.6 130 66.9
BolC7t41404H Brassica oleracea HOM05D004828 ORTHO05D005713 7.7e-38 160.6 130 66.9
MBI07_g12928_MAGBIO Magnolia biondii HOM05D004828 ORTHO05D005713 7.7e-38 160.6 110 77.3
Nitab4.5_0001051g0110 Nicotiana tabacum HOM05D004828 ORTHO05D005713 1.0e-37 160.2 107 76.6
Manes.15G044800 Manihot esculenta HOM05D004828 ORTHO05D005713 1.7e-37 159.5 126 69.8
ClCG05G004070 Citrullus lanatus HOM05D002764 ORTHO05D002960 3.8e-37 158.3 85 87.1
Nitab4.5_0002709g0020 Nicotiana tabacum HOM05D004828 ORTHO05D005713 3.8e-37 158.3 114 75.4
TWI73G1205 Tripterygium wilfordii HOM05D004828 ORTHO05D005713 3.8e-37 158.3 117 72.6
Hund03081 Selenicereus undatus HOM05D004828 ORTHO05D005713 5.0e-37 157.9 124 70.2
Atru.chr4.1937 Acer truncatum HOM05D004828 ORTHO05D005713 8.5e-37 157.1 127 66.1
CDE02G2944 Ceratophyllum demersum HOM05D004828 ORTHO05D005713 1.4e-36 156.4 124 68.5
Gohir.A09G227900 Gossypium hirsutum HOM05D004828 ORTHO05D005713 1.4e-36 156.4 123 69.9
Gorai.006G251600 Gossypium raimondii HOM05D004828 ORTHO05D005713 1.4e-36 156.4 123 69.9
EL10Ac3g04953 Beta vulgaris HOM05D004828 ORTHO05D005713 1.9e-36 156.0 113 72.6
Duzib151G0671 Durio zibethinus HOM05D004828 ORTHO05D005713 1.9e-36 156.0 125 68.8
Gohir.D10G159300 Gossypium hirsutum HOM05D004828 ORTHO05D005713 1.9e-36 156.0 130 69.2
CARHR103280 Cardamine hirsuta HOM05D004828 ORTHO05D005713 3.2e-36 155.2 125 70.4
Gohir.D09G228900 Gossypium hirsutum HOM05D004828 ORTHO05D005713 4.2e-36 154.8 123 69.1
unitig_32.g10853 Utricularia gibba HOM05D004828 ORTHO05D005713 4.2e-36 154.8 111 74.8
AUR62035095 Chenopodium quinoa HOM05D004828 ORTHO05D005713 5.5e-36 154.5 124 69.4
Sc13g0006160 Simmondsia chinensis HOM05D004828 ORTHO05D005713 5.5e-36 154.5 128 66.4
TWI53G1324 Tripterygium wilfordii HOM05D004828 ORTHO05D005713 7.2e-36 154.1 85 87.1
DCAR_027339 Daucus carota HOM05D004828 ORTHO05D005713 9.4e-36 153.7 102 77.5
Aa31LG8G11410 Aethionema arabicum HOM05D004828 ORTHO05D005713 1.2e-35 153.3 132 68.2
Sabra10G0040600 Salix brachista HOM05D004828 ORTHO05D005713 1.2e-35 153.3 125 66.4
Hund27524 Selenicereus undatus HOM05D004828 ORTHO05D005713 2.1e-35 152.5 125 66.4
Hund27531 Selenicereus undatus HOM05D004828 ORTHO05D005713 2.1e-35 152.5 125 66.4
CAN.G220.85 Capsicum annuum HOM05D004828 ORTHO05D005713 2.7e-35 152.1 85 88.2
ATR1127G070 Amborella trichopoda HOM05D004828 ORTHO05D005713 3.6e-35 151.8 107 72.0
AUR62016177 Chenopodium quinoa HOM05D004828 ORTHO05D005713 3.6e-35 151.8 125 68.8
Ah.04g155350 Amaranthus hybridus HOM05D004828 ORTHO05D005713 1.0e-34 150.2 124 66.1
FAN12G3003 Fragaria x ananassa HOM05D004828 ORTHO05D005713 1.4e-34 149.8 94 76.6
PGSC0003DMG400017198 Solanum tuberosum HOM05D004828 ORTHO05D005713 8.8e-34 147.1 116 69.8
Solyc09g090570.2 Solanum lycopersicum HOM05D004828 ORTHO05D005713 1.1e-33 146.7 116 69.8
Sopen09g033510 Solanum pennellii HOM05D004828 ORTHO05D005713 4.4e-33 144.8 116 69.0
Zm00001eb038530 Zea mays HOM05D004828 ORTHO05D005713 1.7e-32 142.9 111 66.7
Os08g0566600 Oryza sativa ssp. japonica HOM05D004828 ORTHO05D005713 2.2e-32 142.5 128 64.1
SEGI_28577 Sequoiadendron giganteum HOM05D004828 ORTHO05D005713 2.2e-32 142.5 83 83.1
Zm00001eb175600 Zea mays HOM05D004828 ORTHO05D005713 6.3e-32 141.0 113 65.5
Mapoly0121s0039 Marchantia polymorpha HOM05D004828 ORTHO05D005713 2.4e-31 139.0 85 81.2
Gohir.A10G108500 Gossypium hirsutum HOM05D004828 ORTHO05D005713 5.9e-30 134.4 125 64.0
AagrBONN_evm.TU.Sc2ySwM_117.3192 Anthoceros agrestis HOM05D004828 ORTHO05D005713 2.2e-29 132.5 134 57.5
Pp3c8_17140 Physcomitrium patens HOM05D004828 ORTHO05D005713 2.9e-29 132.1 75 85.3
Gorai.011G178900 Gossypium raimondii HOM05D004828 ORTHO05D005713 1.1e-28 130.2 125 62.4
CBR_g31156 Chara braunii HOM05D004828 ORTHO05D005713 2.5e-28 129.0 76 80.3
Pp3c24_11690 Physcomitrium patens HOM05D004828 ORTHO05D005713 2.5e-28 129.0 115 61.7
HPP92_008537 Vanilla planifolia HOM05D004828 ORTHO05D005713 3.2e-28 128.6 123 59.3
Actinidia20833 Actinidia chinensis HOM05D004828 ORTHO05D005713 9.7e-25 117.1 69 84.1
Nn1g02928 Nelumbo nucifera HOM05D004828 ORTHO05D005713 4.8e-24 114.8 90 66.7
Nn3g19756 Nelumbo nucifera HOM05D004828 ORTHO05D005713 2.4e-23 112.5 91 65.9
Peaxi162Scf00033g02911 Petunia axillaris HOM05D004828 ORTHO05D005713 4.1e-23 111.7 115 56.5
MCO16G064 Micromonas commoda HOM05D004828 ORTHO05D005713 7.0e-23 110.9 76 73.7
Sed0028180 Sechium edule HOM05D004828 ORTHO05D005713 1.6e-22 109.8 116 57.8
SalBow3G4432 Salvia bowleyana HOM05D004828 ORTHO05D005713 1.5e-20 103.2 112 57.1
Gohir.A01G025800 Gossypium hirsutum HOM05D004828 ORTHO05D005713 7.2e-20 100.9 92 59.8
CDE04G3689 Ceratophyllum demersum HOM05D004828 ORTHO05D005713 1.6e-19 99.8 85 63.5
Cre05.g242400 Chlamydomonas reinhardtii HOM05D004828 ORTHO05D005713 4.7e-19 98.2 81 60.5
AL3G43100 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 8.0e-19 97.4 62 75.8
Oeu002290.1 Olea europaea HOM05D004828 ORTHO05D005713 1.5e-17 93.2 95 63.2
Actinidia11366 Actinidia chinensis HOM05D004828 ORTHO05D005713 9.8e-17 90.5 46 97.8
PRCOL_00004079 Prasinoderma coloniale HOM05D004828 ORTHO05D005713 4.1e-15 85.1 114 45.6
Nn1g09503 Nelumbo nucifera HOM05D004828 ORTHO05D005713 5.4e-15 84.7 64 64.1
AL3G43090 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 9.1e-15 84.0 53 75.5
Lalb_Chr03g0037001 Lupinus albus HOM05D004828 ORTHO05D005713 1.9e-12 76.3 44 72.7
ATR0733G110 Amborella trichopoda HOM05D004828 ORTHO05D005713 7.7e-06 54.3 33 72.7


User provided reference genes

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