Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0009068 Sechium edule HOM05D003929 ORTHO05D004499 1.3e-189 666.4 372 100.0
Sed0022246 Sechium edule HOM05D003929 ORTHO05D004499 9.0e-159 563.9 375 85.6
ClCG06G017000 Citrullus lanatus HOM05D003929 ORTHO05D004499 1.7e-149 533.1 371 82.5
MELO3C026291.2 Cucumis melo HOM05D003929 ORTHO05D004499 7.9e-139 497.7 373 78.8
CsaV3_1G001520 Cucumis sativus L. HOM05D003929 ORTHO05D004499 3.3e-137 492.3 371 78.2
Cpa.g.sc770.1 Carica papaya HOM05D003929 ORTHO05D004499 1.2e-105 387.5 375 62.4
QL10p011722 Quercus lobata HOM05D003929 ORTHO05D004499 2.6e-105 386.3 372 62.9
CiPaw.11G026500 Carya illinoinensis HOM05D003929 ORTHO05D004499 4.4e-105 385.6 372 59.9
Prupe.5G174100 Prunus persica HOM05D003929 ORTHO05D004499 6.4e-104 381.7 371 61.7
Duzib068G1333 Durio zibethinus HOM05D003929 ORTHO05D004499 2.0e-102 376.7 375 61.6
RcHm_v2.0_Chr7g0193581 Rosa chinensis HOM05D003929 ORTHO05D004499 3.5e-102 375.9 360 61.9
TWI14G0242 Tripterygium wilfordii HOM05D003929 ORTHO05D004499 1.5e-100 370.5 376 60.1
Potri.012G080800 Populus trichocarpa HOM05D003929 ORTHO05D004499 1.4e-98 364.0 377 61.8
FvH4_5g05290 Fragaria vesca HOM05D003929 ORTHO05D004499 8.9e-98 361.3 358 61.5
FAN13G1321 Fragaria x ananassa HOM05D003929 ORTHO05D004499 8.9e-98 361.3 344 63.1
FAN18G3765 Fragaria x ananassa HOM05D003929 ORTHO05D004499 8.9e-98 361.3 358 61.5
Dinv20657 Davidia involucrata HOM05D003929 ORTHO05D004499 2.0e-97 360.1 386 59.1
FAN18G3294 Fragaria x ananassa HOM05D003929 ORTHO05D004499 2.0e-97 360.1 358 60.1
Duzib205G0135 Durio zibethinus HOM05D003929 ORTHO05D004499 2.6e-97 359.8 376 59.6
Atru.chr9.2475 Acer truncatum HOM05D003929 ORTHO05D004499 4.4e-97 359.0 375 58.7
FAN04G3176 Fragaria x ananassa HOM05D003929 ORTHO05D004499 1.9e-95 353.6 357 60.8
Cfa019114 Carpinus fangiana HOM05D003929 ORTHO05D004499 4.1e-95 352.4 396 56.8
CiPaw.12G026400 Carya illinoinensis HOM05D003929 ORTHO05D004499 7.0e-95 351.7 368 58.4
Oeu016382.1 Olea europaea HOM05D003929 ORTHO05D004499 7.0e-95 351.7 378 58.7
Glyma.06G182600 Glycine max HOM05D003929 ORTHO05D004499 1.3e-93 347.4 347 58.2
Gorai.008G295200 Gossypium raimondii HOM05D003929 ORTHO05D004499 2.3e-93 346.7 376 57.7
Gohir.A12G274000 Gossypium hirsutum HOM05D003929 ORTHO05D004499 5.0e-93 345.5 377 57.8
Cc04_g14000 Coffea canephora HOM05D003929 ORTHO05D004499 6.6e-93 345.1 380 55.8
Lalb_Chr13g0297821 Lupinus albus HOM05D003929 ORTHO05D004499 6.6e-93 345.1 369 58.5
Ciclev10024320m.g Citrus clementina HOM05D003929 ORTHO05D004499 2.5e-92 343.2 376 59.0
Gohir.D12G274700 Gossypium hirsutum HOM05D003929 ORTHO05D004499 3.3e-92 342.8 368 58.4
MD06G1174100 Malus domestica HOM05D003929 ORTHO05D004499 3.3e-92 342.8 322 63.7
TPR.G37553 Trifolium pratense HOM05D003929 ORTHO05D004499 7.3e-92 341.7 362 55.0
Psat4g057880 Pisum sativum HOM05D003929 ORTHO05D004499 9.5e-92 341.3 382 52.6
TWI39G0937 Tripterygium wilfordii HOM05D003929 ORTHO05D004499 1.6e-91 340.5 376 58.5
VMungo1309G0717 Vigna mungo HOM05D003929 ORTHO05D004499 1.6e-91 340.5 347 57.3
MD14G1180600 Malus domestica HOM05D003929 ORTHO05D004499 2.1e-91 340.1 321 63.6
THA.LOC104821459 Tarenaya hassleriana HOM05D003929 ORTHO05D004499 2.8e-91 339.7 375 57.1
Thecc.03G012300 Theobroma cacao HOM05D003929 ORTHO05D004499 4.7e-91 339.0 375 57.1
Dinv02898 Davidia involucrata HOM05D003929 ORTHO05D004499 8.1e-91 338.2 380 57.4
Migut.I00015 Erythranthe guttata HOM05D003929 ORTHO05D004499 1.1e-90 337.8 379 56.5
Manes.14G066000 Manihot esculenta HOM05D003929 ORTHO05D004499 1.4e-90 337.4 385 58.2
Phvul.009G178800 Phaseolus vulgaris HOM05D003929 ORTHO05D004499 1.8e-90 337.0 338 56.8
CSS0017959 Camellia sinensis var. sinensis HOM05D003929 ORTHO05D004499 2.3e-90 336.7 355 60.6
Lj1g0005514 Lotus japonicus HOM05D003929 ORTHO05D004499 2.3e-90 336.7 333 61.6
TWI31G0970 Tripterygium wilfordii HOM05D003929 ORTHO05D004499 5.2e-90 335.5 374 58.3
THA.LOC104818232 Tarenaya hassleriana HOM05D003929 ORTHO05D004499 6.8e-90 335.1 371 57.1
Peaxi162Scf00017g02914 Petunia axillaris HOM05D003929 ORTHO05D004499 2.0e-89 333.6 370 55.7
GSVIVG01007750001 Vitis vinifera HOM05D003929 ORTHO05D004499 5.8e-89 332.0 375 54.7
DCAR_026132 Daucus carota HOM05D003929 ORTHO05D004499 7.5e-89 331.6 372 56.5
Eucgr.B00317 Eucalyptus grandis HOM05D003929 ORTHO05D004499 7.5e-89 331.6 360 58.3
SalBow5G2324 Salvia bowleyana HOM05D003929 ORTHO05D004499 7.5e-89 331.6 347 59.4
Nitab4.5_0001017g0080 Nicotiana tabacum HOM05D003929 ORTHO05D004499 9.8e-89 331.3 367 55.0
ECA232G3264 Erigeron canadensis HOM05D003929 ORTHO05D004499 3.7e-88 329.3 378 59.3
CAN.G628.79 Capsicum annuum HOM05D003929 ORTHO05D004499 7.1e-87 325.1 374 53.5
Lalb_Chr11g0071231 Lupinus albus HOM05D003929 ORTHO05D004499 7.1e-87 325.1 374 52.4
arahy.Tifrunner.gnm1.ann1.S02CG0 Arachis hypogaea HOM05D003929 ORTHO05D004499 9.2e-87 324.7 380 52.6
Rhsim08G0171800 Rhododendron simsii HOM05D003929 ORTHO05D004499 9.2e-87 324.7 377 57.0
Aa31LG11G880 Aethionema arabicum HOM05D003929 ORTHO05D004499 1.2e-86 324.3 341 53.4
CANSAT80G0843 Cannabis sativa HOM05D003929 ORTHO05D004499 3.5e-86 322.8 373 55.0
Haze_07467 Corylus avellana HOM05D003929 ORTHO05D004499 3.5e-86 322.8 432 52.3
Hma1.2p1_0176F.1_g077430 Hydrangea macrophylla HOM05D003929 ORTHO05D004499 4.6e-86 322.4 371 55.3
PGR083G1389 Punica granatum HOM05D003929 ORTHO05D004499 4.6e-86 322.4 363 54.5
Sopen06g027750 Solanum pennellii HOM05D003929 ORTHO05D004499 4.6e-86 322.4 375 55.2
HanXRQChr16g0504021 Helianthus annuus HOM05D003929 ORTHO05D004499 6.0e-86 322.0 339 61.7
Potri.015G076100 Populus trichocarpa HOM05D003929 ORTHO05D004499 1.3e-85 320.9 376 57.7
PGSC0003DMG400027090 Solanum tuberosum HOM05D003929 ORTHO05D004499 1.3e-85 320.9 376 54.8
Solyc06g071470.4 Solanum lycopersicum HOM05D003929 ORTHO05D004499 1.7e-85 320.5 375 54.4
FAN08G2589 Fragaria x ananassa HOM05D003929 ORTHO05D004499 5.1e-85 318.9 335 59.4
Manes.06G104600 Manihot esculenta HOM05D003929 ORTHO05D004499 8.6e-85 318.2 379 56.5
Medtr4g106880 Medicago truncatula HOM05D003929 ORTHO05D004499 1.1e-84 317.8 362 56.6
TAR622G0564 Trochodendron aralioides HOM05D003929 ORTHO05D004499 1.1e-84 317.8 398 51.8
CARHR276590 Cardamine hirsuta HOM05D003929 ORTHO05D004499 3.3e-84 316.2 377 51.2
PSO063G6021 Papaver somniferum HOM05D003929 ORTHO05D004499 3.3e-84 316.2 396 52.5
Lj4g0023186 Lotus japonicus HOM05D003929 ORTHO05D004499 9.5e-84 314.7 364 54.7
arahy.Tifrunner.gnm1.ann1.R24CC5 Arachis hypogaea HOM05D003929 ORTHO05D004499 1.2e-83 314.3 384 53.1
Sp2g25960 Schrenkiella parvula HOM05D003929 ORTHO05D004499 1.2e-83 314.3 383 51.4
TAR374G1605 Trochodendron aralioides HOM05D003929 ORTHO05D004499 1.6e-83 313.9 388 54.4
Sc04g0001820 Simmondsia chinensis HOM05D003929 ORTHO05D004499 2.8e-83 313.2 378 54.2
Thhalv10004017m.g Eutrema salsugineum HOM05D003929 ORTHO05D004499 1.1e-82 311.2 388 50.3
AL8G39770 Arabidopsis lyrata HOM05D003929 ORTHO05D004499 2.3e-82 310.1 381 51.2
MSTRG.11449 Avicennia marina HOM05D003929 ORTHO05D004499 2.3e-82 310.1 373 54.4
CAN.G781.12 Capsicum annuum HOM05D003929 ORTHO05D004499 4.0e-82 309.3 367 52.9
Glyma.05G037400 Glycine max HOM05D003929 ORTHO05D004499 8.9e-82 308.1 351 53.3
BraA09t36437Z Brassica rapa HOM05D003929 ORTHO05D004499 2.6e-81 306.6 344 54.4
AT5G62810 Arabidopsis thaliana HOM05D003929 ORTHO05D004499 3.4e-81 306.2 383 51.7
Carub.0008s2353 Capsella rubella HOM05D003929 ORTHO05D004499 3.4e-81 306.2 378 50.3
Hund09434 Selenicereus undatus HOM05D003929 ORTHO05D004499 3.4e-81 306.2 371 53.6
BolC9t53798H Brassica oleracea HOM05D003929 ORTHO05D004499 7.6e-81 305.1 380 50.8
A09p07860 Brassica napus HOM05D003929 ORTHO05D004499 1.3e-80 304.3 361 52.9
BcaC04g23392 Brassica carinata HOM05D003929 ORTHO05D004499 2.2e-80 303.5 380 50.5
C09p08860 Brassica napus HOM05D003929 ORTHO05D004499 2.2e-80 303.5 380 50.5
Phvul.003G200200 Phaseolus vulgaris HOM05D003929 ORTHO05D004499 6.4e-80 302.0 375 53.9
VMungo1215G1851 Vigna mungo HOM05D003929 ORTHO05D004499 6.4e-80 302.0 353 56.1
EL10Ac5g10751 Beta vulgaris HOM05D003929 ORTHO05D004499 1.4e-79 300.8 372 50.0
Glyma.17G089700 Glycine max HOM05D003929 ORTHO05D004499 1.4e-79 300.8 349 56.4
BcaC01g02523 Brassica carinata HOM05D003929 ORTHO05D004499 2.4e-79 300.1 388 49.2
BolC3t18647H Brassica oleracea HOM05D003929 ORTHO05D004499 4.1e-79 299.3 390 49.0
BraA06t25903Z Brassica rapa HOM05D003929 ORTHO05D004499 9.2e-79 298.1 348 50.9
Lj5C124G9 Lonicera japonica HOM05D003929 ORTHO05D004499 1.2e-78 297.7 378 53.7
C03p63930 Brassica napus HOM05D003929 ORTHO05D004499 1.6e-78 297.4 388 49.2
Lsat_1_v5_gn_4_75281 Lactuca sativa HOM05D003929 ORTHO05D004499 1.6e-78 297.4 349 55.6
Aqoxy3G02955 Aquilegia oxysepala HOM05D003929 ORTHO05D004499 2.7e-78 296.6 371 52.8
SGA_v2.0_scaffold90G27941 Striga asiatica HOM05D003929 ORTHO05D004499 2.7e-78 296.6 398 54.0
Ca_21916_v3 Cicer arietinum L. HOM05D003929 ORTHO05D004499 4.6e-78 295.8 346 56.1
MBI10_g41915_MAGBIO Magnolia biondii HOM05D003929 ORTHO05D004499 1.0e-77 294.7 371 52.3
A06p29570 Brassica napus HOM05D003929 ORTHO05D004499 3.9e-77 292.7 342 50.3
BcaB02g09694 Brassica carinata HOM05D003929 ORTHO05D004499 5.1e-77 292.4 344 50.9
Nitab4.5_0009783g0030 Nicotiana tabacum HOM05D003929 ORTHO05D004499 5.1e-77 292.4 351 50.4
PGR044G0511 Punica granatum HOM05D003929 ORTHO05D004499 1.2e-75 287.7 344 53.2
PSO832G4520 Papaver somniferum HOM05D003929 ORTHO05D004499 3.6e-75 286.2 373 51.7
vmacro19383 Vaccinium macrocarpon HOM05D003929 ORTHO05D004499 1.4e-74 284.3 363 48.8
Nn1g01975 Nelumbo nucifera HOM05D003929 ORTHO05D004499 1.7e-72 277.3 354 54.2
Nitab4.5_0007719g0020 Nicotiana tabacum HOM05D003929 ORTHO05D004499 5.4e-71 272.3 359 49.9
Lalb_Chr07g0182721 Lupinus albus HOM05D003929 ORTHO05D004499 6.0e-70 268.9 336 53.9
ATR0730G040 Amborella trichopoda HOM05D003929 ORTHO05D004499 1.7e-69 267.3 374 48.9
HPP92_021833 Vanilla planifolia HOM05D003929 ORTHO05D004499 2.3e-69 266.9 390 45.9
Peaxi162Scf00689g00222 Petunia axillaris HOM05D003929 ORTHO05D004499 7.3e-68 261.9 374 45.5
Oeu024692.2 Olea europaea HOM05D003929 ORTHO05D004499 1.8e-66 257.3 321 56.7
AUR62030967 Chenopodium quinoa HOM05D003929 ORTHO05D004499 2.4e-66 256.9 386 46.6
Actinidia33066 Actinidia chinensis HOM05D003929 ORTHO05D004499 5.8e-65 252.3 300 57.3
Hma1.2p1_0000F.1_g000890 Hydrangea macrophylla HOM05D003929 ORTHO05D004499 1.3e-64 251.1 342 50.0
SEGI_11105 Sequoiadendron giganteum HOM05D003929 ORTHO05D004499 8.4e-64 248.4 406 43.1
CDE11G0983 Ceratophyllum demersum HOM05D003929 ORTHO05D004499 1.9e-63 247.3 382 45.0
Ah.11g051630 Amaranthus hybridus HOM05D003618 ORTHO05D004302 4.2e-63 246.1 374 44.4
arahy.Tifrunner.gnm1.ann1.W2DQVT Arachis hypogaea HOM05D003929 ORTHO05D004499 7.1e-63 245.4 382 47.9
CDE05G2632 Ceratophyllum demersum HOM05D003929 ORTHO05D004499 9.3e-63 245.0 385 46.0
CSS0023375 Camellia sinensis var. sinensis HOM05D003929 ORTHO05D004499 4.6e-62 242.7 253 62.1
Actinidia19318 Actinidia chinensis HOM05D003929 ORTHO05D004499 1.3e-61 241.1 235 62.1
Migut.D01928 Erythranthe guttata HOM05D003929 ORTHO05D004499 1.1e-58 231.5 308 51.0
AUR62008214 Chenopodium quinoa HOM05D003929 ORTHO05D004499 5.8e-57 225.7 356 42.1
SalBow5G2758 Salvia bowleyana HOM05D003929 ORTHO05D004499 9.9e-57 224.9 395 41.5
Solyc03g114330.3 Solanum lycopersicum HOM05D003929 ORTHO05D004499 9.9e-57 224.9 367 41.4
Sopen03g033430 Solanum pennellii HOM05D003929 ORTHO05D004499 1.7e-56 224.2 367 41.4
unitig_749.g13474 Utricularia gibba HOM05D003929 ORTHO05D004499 1.4e-55 221.1 346 42.5
Atru.chr11.2035 Acer truncatum HOM05D003929 ORTHO05D004499 1.9e-55 220.7 368 42.1
COL.COLO4_30035 Corchorus olitorius HOM05D003929 ORTHO05D004499 1.9e-52 210.7 376 41.0
COL.COLO4_24172 Corchorus olitorius HOM05D003929 ORTHO05D004499 3.7e-51 206.5 363 40.8
Thecc.02G250700 Theobroma cacao HOM05D003929 ORTHO05D004499 1.1e-50 204.9 344 42.2
Nitab4.5_0000003g0590 Nicotiana tabacum HOM05D003929 ORTHO05D004499 1.8e-50 204.1 362 39.5
Psat4g209200 Pisum sativum HOM05D003929 ORTHO05D004499 1.4e-47 194.5 327 42.2
Gohir.A03G139300 Gossypium hirsutum HOM05D003929 ORTHO05D004499 1.9e-39 167.5 338 37.3
Gorai.005G182200 Gossypium raimondii HOM05D003929 ORTHO05D004499 5.5e-39 166.0 336 37.5
Gohir.D02G162200 Gossypium hirsutum HOM05D003929 ORTHO05D004499 1.6e-38 164.5 329 37.4
Mapoly0102s0017 Marchantia polymorpha HOM05D003929 ORTHO05D004499 7.9e-38 162.2 372 36.6
Zm00001eb356320 Zea mays HOM05D003929 ORTHO05D004499 1.0e-37 161.8 307 38.4
Zm00001eb267680 Zea mays HOM05D003929 ORTHO05D004499 6.3e-35 152.5 339 36.9
FAN24G3310 Fragaria x ananassa HOM05D003929 ORTHO05D004499 5.0e-32 142.9 271 38.0
Zm00001eb126680 Zea mays HOM05D003929 ORTHO05D004499 1.4e-31 141.4 293 34.5
Pp3c9_20380 Physcomitrium patens HOM05D003929 ORTHO05D004499 3.2e-31 140.2 257 38.5
Os01g0107000 Oryza sativa ssp. japonica HOM05D003929 ORTHO05D004499 7.2e-31 139.0 195 41.5
Os05g0101200 Oryza sativa ssp. japonica HOM05D003929 ORTHO05D004499 7.2e-31 139.0 372 33.9
Oeu022163.1 Olea europaea HOM05D003929 ORTHO05D004499 2.3e-29 134.0 120 61.7
PSO135G0191 Papaver somniferum HOM05D003929 ORTHO05D004499 3.3e-28 130.2 194 44.8
Pp3c15_21860 Physcomitrium patens HOM05D003929 ORTHO05D004499 8.2e-27 125.6 252 38.5
HanXRQChr16g0526511 Helianthus annuus HOM05D004647 ORTHO05D005349 3.1e-26 123.6 187 50.8
PGR044G1312 Punica granatum HOM05D003929 ORTHO05D004499 2.0e-25 120.9 179 43.0
Hund02741 Selenicereus undatus HOM05D003929 ORTHO05D004499 2.6e-25 120.6 307 32.9
AagrBONN_evm.TU.Sc2ySwM_117.2261 Anthoceros agrestis HOM05D003929 ORTHO05D004499 1.7e-24 117.9 154 45.5
CBR_g3508 Chara braunii HOM05D003929 ORTHO05D004499 4.2e-23 113.2 324 34.6
Lj9A449G50 Lonicera japonica HOM05D003929 ORTHO05D004499 6.1e-22 109.4 121 52.1
PGSC0003DMG400024502 Solanum tuberosum HOM05D003929 ORTHO05D004499 1.8e-18 97.8 105 52.4
Lj9A449T48 Lonicera japonica HOM05D003929 ORTHO05D004499 4.5e-17 93.2 72 69.4
SHI17029 Sapria himalayana HOM05D003929 ORTHO05D004499 1.3e-16 91.7 126 42.1
SHI17030 Sapria himalayana HOM05D003929 ORTHO05D004499 6.5e-16 89.4 99 51.5
Nitab4.5_0000866g0190 Nicotiana tabacum HOM05D003929 ORTHO05D004499 8.5e-16 89.0 121 43.0
Actinidia19319 Actinidia chinensis HOM05D003618 ORTHO05D004302 1.4e-13 81.6 201 42.8
ClCG01G013120 Citrullus lanatus HOM05D003929 ORTHO05D004499 8.8e-13 79.0 126 41.3
Cre10.g454025 Chlamydomonas reinhardtii HOM05D003929 ORTHO05D004499 1.5e-12 78.2 80 57.5
CBR_g10793 Chara braunii HOM05D027206 ORTHO05D004499 1.7e-11 74.7 72 55.6
Os05g0578000 Oryza sativa ssp. japonica HOM05D003929 ORTHO05D004499 5.3e-10 69.7 108 40.7
MCO04G191 Micromonas commoda HOM05D003929 ORTHO05D004499 9.1e-10 68.9 123 37.4
Zm00001eb296750 Zea mays HOM05D003929 ORTHO05D004499 1.3e-08 65.1 101 42.6
SHI17025 Sapria himalayana HOM05D003929 ORTHO05D004499 8.5e-08 62.4 41 73.2
CBR_g3506 Chara braunii HOM05D003929 ORTHO05D004499 1.1e-07 62.0 47 57.4
Cfa019127 Carpinus fangiana HOM05D003929 ORTHO05D004499 3.2e-07 60.5 37 75.7
arahy.Tifrunner.gnm1.ann1.49JIZL Arachis hypogaea HOM05D003929 ORTHO05D004499 8.0e-06 55.8 50 58.0


User provided reference genes

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