Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0009063 Sechium edule HOM05D004193 ORTHO05D004862 4.6e-164 581.6 407 100.0
Sed0018737 Sechium edule HOM05D004193 ORTHO05D004862 1.0e-110 404.4 415 77.1
MELO3C007203.2 Cucumis melo HOM05D004193 ORTHO05D004862 1.9e-109 400.2 408 78.4
ClCG01G023850 Citrullus lanatus HOM05D004193 ORTHO05D004862 2.5e-109 399.8 387 81.1
MD10G1276600 Malus domestica HOM05D004193 ORTHO05D004862 1.1e-96 357.8 387 74.2
CiPaw.09G072000 Carya illinoinensis HOM05D004193 ORTHO05D004862 2.0e-95 353.6 386 74.1
QL05p048361 Quercus lobata HOM05D004193 ORTHO05D004862 9.4e-93 344.7 382 73.8
Cfa000640 Carpinus fangiana HOM05D004193 ORTHO05D004862 6.7e-91 338.6 384 72.9
CsaV3_6G051010 Cucumis sativus L. HOM05D004193 ORTHO05D004862 3.3e-90 336.3 369 79.9
Haze_06190 Corylus avellana HOM05D004193 ORTHO05D004862 1.7e-89 334.0 382 73.0
FAN25G3279 Fragaria x ananassa HOM05D004193 ORTHO05D004862 3.1e-88 329.7 381 73.5
Sed0000562 Sechium edule HOM05D004193 ORTHO05D004862 3.1e-88 329.7 387 72.4
ClCG03G007510 Citrullus lanatus HOM05D004193 ORTHO05D004862 9.1e-88 328.2 385 71.2
FvH4_3g07430 Fragaria vesca HOM05D004193 ORTHO05D004862 1.6e-87 327.4 380 73.2
FAN11G0786 Fragaria x ananassa HOM05D004193 ORTHO05D004862 1.6e-87 327.4 380 73.2
FAN16G2064 Fragaria x ananassa HOM05D004193 ORTHO05D004862 2.0e-87 327.0 381 73.5
FAN21G2979 Fragaria x ananassa HOM05D004193 ORTHO05D004862 3.5e-87 326.2 381 73.2
MELO3C002671.2 Cucumis melo HOM05D004193 ORTHO05D004862 5.9e-87 325.5 387 71.3
CsaV3_1G033160 Cucumis sativus L. HOM05D004193 ORTHO05D004862 5.0e-86 322.4 385 71.2
Manes.17G058300 Manihot esculenta HOM05D004193 ORTHO05D004862 4.2e-85 319.3 383 70.5
CANSAT21G2377 Cannabis sativa HOM05D004193 ORTHO05D004862 2.1e-84 317.0 389 69.9
Duzib160G0263 Durio zibethinus HOM05D004193 ORTHO05D004862 3.0e-83 313.2 383 70.2
Atru.chr10.1586 Acer truncatum HOM05D004193 ORTHO05D004862 4.0e-83 312.8 378 69.8
Lj4g0003170 Lotus japonicus HOM05D004193 ORTHO05D004862 3.4e-82 309.7 383 69.7
PSO541G1278 Papaver somniferum HOM05D004193 ORTHO05D004862 5.7e-82 308.9 388 67.3
MSTRG.16163 Avicennia marina HOM05D004193 ORTHO05D004862 3.7e-81 306.2 389 68.1
Migut.M01015 Erythranthe guttata HOM05D004193 ORTHO05D004862 4.8e-81 305.8 397 66.8
PGR042G3004 Punica granatum HOM05D004193 ORTHO05D004862 4.8e-81 305.8 386 69.7
Duzib235G0429 Durio zibethinus HOM05D004193 ORTHO05D004862 6.3e-81 305.4 385 69.9
PSO675G2498 Papaver somniferum HOM05D004193 ORTHO05D004862 1.4e-80 304.3 386 66.8
Nn1g04504 Nelumbo nucifera HOM05D004193 ORTHO05D004862 2.4e-80 303.5 384 66.9
Phvul.006G174100 Phaseolus vulgaris HOM05D004193 ORTHO05D004862 3.1e-80 303.1 385 68.3
Oeu039891.1 Olea europaea HOM05D004193 ORTHO05D004862 9.1e-80 301.6 389 68.9
Eucgr.E02765 Eucalyptus grandis HOM05D004193 ORTHO05D004862 1.6e-79 300.8 354 72.3
TAR626G1977 Trochodendron aralioides HOM05D004193 ORTHO05D004862 1.6e-79 300.8 387 67.4
Aqoxy1G02001 Aquilegia oxysepala HOM05D004193 ORTHO05D004862 5.9e-79 298.9 382 66.5
Oeu041745.1 Olea europaea HOM05D004193 ORTHO05D004862 5.9e-79 298.9 407 65.4
Cpa.g.sc7.100 Carica papaya HOM05D004193 ORTHO05D004862 2.3e-78 297.0 406 66.7
Glyma.13G227700 Glycine max HOM05D004193 ORTHO05D004862 2.9e-78 296.6 410 65.4
RcHm_v2.0_Chr5g0011431 Rosa chinensis HOM05D004193 ORTHO05D004862 6.6e-78 295.4 370 70.5
Gohir.D06G138100 Gossypium hirsutum HOM05D004193 ORTHO05D004862 8.6e-78 295.0 389 67.1
Glyma.15G084800 Glycine max HOM05D004193 ORTHO05D004862 4.2e-77 292.7 385 66.8
Sc05g0007000 Simmondsia chinensis HOM05D004193 ORTHO05D004862 4.2e-77 292.7 381 68.5
Gorai.010G160400 Gossypium raimondii HOM05D004193 ORTHO05D004862 1.6e-76 290.8 389 66.8
Sabra04G0038500 Salix brachista HOM05D004193 ORTHO05D004862 2.8e-76 290.0 383 67.1
Gohir.A06G132500 Gossypium hirsutum HOM05D004193 ORTHO05D004862 3.6e-76 289.7 389 66.6
Ca_17907_v3 Cicer arietinum L. HOM05D004193 ORTHO05D004862 4.7e-76 289.3 387 67.2
Medtr2g016620 Medicago truncatula HOM05D004193 ORTHO05D004862 4.7e-76 289.3 390 65.4
Nitab4.5_0002458g0090 Nicotiana tabacum HOM05D004193 ORTHO05D004862 6.1e-76 288.9 384 66.7
TWI09G0810 Tripterygium wilfordii HOM05D004193 ORTHO05D004862 1.4e-75 287.7 386 67.1
Nitab4.5_0000462g0040 Nicotiana tabacum HOM05D004193 ORTHO05D004862 1.8e-75 287.3 386 65.8
Potri.004G059500 Populus trichocarpa HOM05D004193 ORTHO05D004862 2.3e-75 287.0 383 66.8
Sabra11G0057200 Salix brachista HOM05D004193 ORTHO05D004862 4.0e-75 286.2 383 67.4
Dinv12762 Davidia involucrata HOM05D004193 ORTHO05D004862 6.8e-75 285.4 322 74.8
Sabra11G0053600 Salix brachista HOM05D004193 ORTHO05D004862 6.8e-75 285.4 381 67.7
Dinv32348 Davidia involucrata HOM05D004193 ORTHO05D004862 1.2e-74 284.6 321 74.8
Lalb_Chr15g0086241 Lupinus albus HOM05D004193 ORTHO05D004862 2.0e-74 283.9 397 65.0
Peaxi162Scf00734g00053 Petunia axillaris HOM05D004193 ORTHO05D004862 3.4e-74 283.1 386 65.8
Nn3g21120 Nelumbo nucifera HOM05D004193 ORTHO05D004862 1.3e-73 281.2 383 65.0
Lalb_Chr18g0054701 Lupinus albus HOM05D004193 ORTHO05D004862 2.2e-73 280.4 385 65.5
Ca_00456_v3 Cicer arietinum L. HOM05D004193 ORTHO05D004862 6.3e-73 278.9 387 67.4
VMungo0540G1249 Vigna mungo HOM05D004193 ORTHO05D004862 6.3e-73 278.9 385 65.2
CAN.G866.27 Capsicum annuum HOM05D004193 ORTHO05D004862 8.3e-73 278.5 385 64.4
Nitab4.5_0000437g0190 Nicotiana tabacum HOM05D004193 ORTHO05D004862 2.4e-72 276.9 404 61.6
TPR.G6739 Trifolium pratense HOM05D004193 ORTHO05D004862 2.4e-72 276.9 411 65.9
SalBow8G4302 Salvia bowleyana HOM05D004193 ORTHO05D004862 7.0e-72 275.4 398 64.6
Ciclev10015277m.g Citrus clementina HOM05D004193 ORTHO05D004862 9.2e-72 275.0 382 67.5
Potri.011G069500 Populus trichocarpa HOM05D004193 ORTHO05D004862 2.0e-71 273.9 382 65.7
Solyc02g072250.1 Solanum lycopersicum HOM05D004193 ORTHO05D004862 2.7e-71 273.5 403 62.0
PGSC0003DMG400026750 Solanum tuberosum HOM05D004193 ORTHO05D004862 2.7e-71 273.5 386 62.2
Gohir.A05G154000 Gossypium hirsutum HOM05D004193 ORTHO05D004862 3.5e-71 273.1 387 63.8
Gohir.D05G156801 Gossypium hirsutum HOM05D004193 ORTHO05D004862 5.9e-71 272.3 439 59.9
Gorai.011G038000 Gossypium raimondii HOM05D004193 ORTHO05D004862 1.0e-70 271.6 382 66.8
Lj6g0022713 Lotus japonicus HOM05D004193 ORTHO05D004862 1.3e-70 271.2 385 68.1
Ah.09g233350 Amaranthus hybridus HOM05D004193 ORTHO05D004862 1.7e-70 270.8 399 63.2
Sopen03g002060 Solanum pennellii HOM05D004193 ORTHO05D004862 1.7e-70 270.8 386 63.5
arahy.Tifrunner.gnm1.ann1.PWB2GB Arachis hypogaea HOM05D004193 ORTHO05D004862 2.9e-70 270.0 403 62.8
SGA_v2.0_scaffold1G00068 Striga asiatica HOM05D004193 ORTHO05D004862 2.9e-70 270.0 391 63.9
arahy.Tifrunner.gnm1.ann1.G2PW3U Arachis hypogaea HOM05D004193 ORTHO05D004862 3.9e-70 269.6 369 66.9
Gohir.D10G036100 Gossypium hirsutum HOM05D004193 ORTHO05D004862 6.6e-70 268.9 382 66.8
HPP92_011510 Vanilla planifolia HOM05D004193 ORTHO05D004862 1.5e-69 267.7 384 64.1
Gohir.A10G035400 Gossypium hirsutum HOM05D004193 ORTHO05D004862 1.9e-69 267.3 356 69.4
Sopen02g021230 Solanum pennellii HOM05D004193 ORTHO05D004862 3.3e-69 266.5 403 61.0
MSTRG.7422 Avicennia marina HOM05D004193 ORTHO05D004862 4.3e-69 266.2 390 62.1
AUR62027707 Chenopodium quinoa HOM05D004193 ORTHO05D004862 7.3e-69 265.4 392 62.8
CAN.G411.59 Capsicum annuum HOM05D004193 ORTHO05D004862 3.6e-68 263.1 406 62.8
TPR.G4517 Trifolium pratense HOM05D004193 ORTHO05D004862 6.1e-68 262.3 330 71.5
Lalb_Chr13g0295201 Lupinus albus HOM05D004193 ORTHO05D004862 3.1e-67 260.0 387 63.6
Psat7g069000 Pisum sativum HOM05D004193 ORTHO05D004862 1.5e-66 257.7 385 63.6
Rhsim13G0188600 Rhododendron simsii HOM05D004193 ORTHO05D004862 9.8e-66 255.0 389 65.3
PGSC0003DMG401028427 Solanum tuberosum HOM05D004193 ORTHO05D004862 9.8e-66 255.0 385 62.1
Medtr8g086590 Medicago truncatula HOM05D004193 ORTHO05D004862 2.2e-65 253.8 387 65.9
Thecc.06G167100 Theobroma cacao HOM05D004193 ORTHO05D004862 2.2e-65 253.8 385 63.6
Duzib192G1038 Durio zibethinus HOM05D004193 ORTHO05D004862 2.9e-65 253.4 383 64.5
DCAR_003990 Daucus carota HOM05D004193 ORTHO05D004862 1.1e-64 251.5 383 62.4
Phvul.002G240100 Phaseolus vulgaris HOM05D004193 ORTHO05D004862 5.4e-64 249.2 411 63.0
AUR62039461 Chenopodium quinoa HOM05D004193 ORTHO05D004862 9.2e-64 248.4 376 62.5
Lsat_1_v5_gn_7_24240 Lactuca sativa HOM05D004193 ORTHO05D004862 9.2e-64 248.4 393 60.1
HanXRQChr10g0316731 Helianthus annuus HOM05D004193 ORTHO05D004862 4.6e-63 246.1 388 62.9
Cc02_g15470 Coffea canephora HOM05D004193 ORTHO05D004862 7.8e-63 245.4 384 62.5
DCAR_027987 Daucus carota HOM05D004193 ORTHO05D004862 1.3e-62 244.6 381 61.2
Ah.14g087050 Amaranthus hybridus HOM05D004193 ORTHO05D004862 2.3e-62 243.8 329 69.9
CARHR225610 Cardamine hirsuta HOM05D004193 ORTHO05D004862 5.6e-61 239.2 394 63.2
Lsat_1_v5_gn_1_108121 Lactuca sativa HOM05D004193 ORTHO05D004862 7.3e-61 238.8 403 59.6
Manes.16G042000 Manihot esculenta HOM05D004193 ORTHO05D004862 1.6e-60 237.7 189 65.1
Thhalv10025247m.g Eutrema salsugineum HOM05D004193 ORTHO05D004862 2.1e-60 237.3 392 62.2
AT4G18760 Arabidopsis thaliana HOM05D004193 ORTHO05D004862 5.2e-59 232.6 397 62.7
arahy.Tifrunner.gnm1.ann1.3H0WIW Arachis hypogaea HOM05D004193 ORTHO05D004862 6.8e-59 232.3 339 64.6
THA.LOC104798441 Tarenaya hassleriana HOM05D004193 ORTHO05D004862 6.8e-59 232.3 394 61.7
AL7G35490 Arabidopsis lyrata HOM05D004193 ORTHO05D004862 2.6e-58 230.3 397 61.7
BcaB04g18496 Brassica carinata HOM05D004193 ORTHO05D004862 2.9e-57 226.9 396 60.4
ATR0012G050 Amborella trichopoda HOM05D004193 ORTHO05D004862 3.2e-56 223.4 380 59.2
Peaxi162Scf00371g00032 Petunia axillaris HOM05D004193 ORTHO05D004862 4.1e-56 223.0 331 65.3
BcaC01g00565 Brassica carinata HOM05D004193 ORTHO05D004862 7.8e-55 218.8 439 56.9
C03p81450 Brassica napus HOM05D004193 ORTHO05D004862 7.8e-55 218.8 439 56.9
BolC3t20416H Brassica oleracea HOM05D004193 ORTHO05D004862 7.8e-55 218.8 439 56.9
A08p13970 Brassica napus HOM05D004193 ORTHO05D004862 1.3e-54 218.0 396 60.6
BraA08t33388Z Brassica rapa HOM05D004193 ORTHO05D004862 1.3e-54 218.0 396 60.6
ECA236G4320 Erigeron canadensis HOM05D004193 ORTHO05D004862 3.0e-54 216.9 391 57.5
Aa31LG6G1470 Aethionema arabicum HOM05D004193 ORTHO05D004862 1.9e-53 214.2 392 60.5
arahy.Tifrunner.gnm1.ann1.XVCK9B Arachis hypogaea HOM05D004193 ORTHO05D004862 9.5e-53 211.8 386 59.8
SEGI_04477 Sequoiadendron giganteum HOM05D004193 ORTHO05D004862 4.7e-52 209.5 401 55.6
BcaNung05916 Brassica carinata HOM05D004193 ORTHO05D004862 1.3e-49 201.4 388 58.8
C01p12740 Brassica napus HOM05D004193 ORTHO05D004862 2.9e-49 200.3 396 57.8
CDE06G0006 Ceratophyllum demersum HOM05D006665 ORTHO05D008327 4.9e-49 199.5 387 40.3
BolC1t01251H Brassica oleracea HOM05D004193 ORTHO05D004862 1.4e-48 198.0 396 57.6
Sp7g17460 Schrenkiella parvula HOM05D004193 ORTHO05D004862 7.1e-48 195.7 394 57.9
A09p21920 Brassica napus HOM05D006665 ORTHO05D008327 3.0e-46 190.3 401 57.4
BcaC09g51473 Brassica carinata HOM05D004193 ORTHO05D004862 1.5e-45 188.0 383 57.7
BcaB07g30869 Brassica carinata HOM05D006665 ORTHO05D008327 1.9e-45 187.6 414 56.0
MBI07_g09546_MAGBIO Magnolia biondii HOM05D004193 ORTHO05D004862 2.8e-44 183.7 272 70.2
CDE02G0812 Ceratophyllum demersum HOM05D004193 ORTHO05D004862 2.4e-43 180.6 341 53.4
Zm00001eb153350 Zea mays HOM05D004193 ORTHO05D004862 2.6e-42 177.2 415 51.1
Prupe.4G065600 Prunus persica HOM05D004193 ORTHO05D004862 3.4e-42 176.8 387 38.2
BraA09t37795Z Brassica rapa HOM05D006665 ORTHO05D008327 1.3e-41 174.9 370 58.4
BolC9t55679H Brassica oleracea HOM05D006665 ORTHO05D008327 6.4e-41 172.6 414 54.3
BcaC04g21745 Brassica carinata HOM05D006665 ORTHO05D008327 1.1e-40 171.8 414 54.6
C09p28090 Brassica napus HOM05D006665 ORTHO05D008327 1.4e-40 171.4 408 54.9
Psat1g195760 Pisum sativum HOM05D004193 ORTHO05D004862 4.2e-40 169.9 286 67.5
arahy.Tifrunner.gnm1.ann1.EP0JTS Arachis hypogaea HOM05D004193 ORTHO05D004862 1.6e-39 167.9 331 60.1
HanXRQChr15g0480781 Helianthus annuus HOM05D004193 ORTHO05D004862 2.1e-39 167.5 330 60.3
AL8G12840 Arabidopsis lyrata HOM05D004193 ORTHO05D004862 1.7e-38 164.5 430 52.3
unitig_8.g4593 Utricularia gibba HOM05D004193 ORTHO05D004862 3.3e-37 160.2 164 53.7
Solyc03g006050.4 Solanum lycopersicum HOM05D004193 ORTHO05D004862 1.1e-35 155.2 131 63.4
A09p43700 Brassica napus HOM05D004193 ORTHO05D004862 4.0e-35 153.3 199 47.2
Sp2g10680 Schrenkiella parvula HOM05D004193 ORTHO05D004862 9.0e-35 152.1 374 54.5
AT5G45770 Arabidopsis thaliana HOM05D004193 ORTHO05D004862 1.5e-34 151.4 405 52.6
BraA01t01950Z Brassica rapa HOM05D004193 ORTHO05D004862 4.4e-34 149.8 192 46.4
CSS0049237 Camellia sinensis var. sinensis HOM05D004193 ORTHO05D004862 3.8e-33 146.7 247 72.5
Lj1A1174T75 Lonicera japonica HOM05D004193 ORTHO05D004862 8.4e-33 145.6 278 66.9
Carub.0008s0222 Capsella rubella HOM05D004193 ORTHO05D004862 4.2e-32 143.3 408 51.5
SMO198G0035 Selaginella moellendorffii HOM05D004193 ORTHO05D004862 2.7e-31 140.6 405 44.7
SEGI_20269 Sequoiadendron giganteum HOM05D004193 ORTHO05D004862 6.6e-30 136.0 379 51.2
CARHR176210 Cardamine hirsuta HOM05D004193 ORTHO05D004862 2.8e-28 130.6 420 46.0
SMO198G0069 Selaginella moellendorffii HOM05D004193 ORTHO05D004862 4.9e-25 119.8 401 47.1
Glyma.05G159900 Glycine max HOM05D004193 ORTHO05D004862 3.2e-24 117.1 117 57.3
Actinidia35595 Actinidia chinensis HOM05D004193 ORTHO05D004862 3.5e-23 113.6 97 60.8
COL.COLO4_31255 Corchorus olitorius HOM05D004193 ORTHO05D004862 9.6e-21 105.5 237 67.5
Nitab4.5_0008526g0040 Nicotiana tabacum HOM05D004193 ORTHO05D004862 9.6e-21 105.5 100 55.0
VMungo1185G0001 Vigna mungo HOM05D004193 ORTHO05D004862 7.6e-18 95.9 115 46.1
AagrBONN_evm.TU.Sc2ySwM_362.2880 Anthoceros agrestis HOM05D004193 ORTHO05D004862 7.1e-16 89.4 187 34.2
unitig_8.g4592 Utricularia gibba HOM05D004193 ORTHO05D004862 6.0e-15 86.3 110 45.5
Os01g0750400 Oryza sativa ssp. japonica HOM05D004193 ORTHO05D004862 7.9e-15 85.9 243 58.0
BraA07t30082Z Brassica rapa HOM05D004193 ORTHO05D004862 1.8e-11 74.7 172 37.2
Cfa015344 Carpinus fangiana HOM05D001136 ORTHO05D001144 2.4e-11 74.3 43 79.1
Cfa019730 Carpinus fangiana HOM05D004193 ORTHO05D004862 2.0e-10 71.2 44 75.0
HanXRQChr04g0116951 Helianthus annuus HOM05D004193 ORTHO05D004862 2.6e-10 70.9 150 88.0
Pp3c14_13680 Physcomitrium patens HOM05D004193 ORTHO05D004862 4.5e-10 70.1 154 31.8
Ah.02g117850 Amaranthus hybridus HOM05D004193 ORTHO05D004862 2.9e-09 67.4 87 50.6
HanXRQChr09g0245841 Helianthus annuus HOM05D004193 ORTHO05D004862 5.0e-09 66.6 43 72.1
HanXRQChr09g0243731 Helianthus annuus HOM05D004193 ORTHO05D004862 1.2e-07 62.0 43 67.4


User provided reference genes

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