Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0009046 Sechium edule HOM05D006968 ORTHO05D008748 1.1e-111 406.8 214 100.0
CsaV3_1G032900 Cucumis sativus L. HOM05D006968 ORTHO05D008748 5.0e-85 318.2 214 79.4
MELO3C002693.2 Cucumis melo HOM05D006968 ORTHO05D008748 2.5e-81 305.8 216 76.4
ClCG03G007290 Citrullus lanatus HOM05D006968 ORTHO05D008748 7.7e-78 294.3 220 71.8
CSS0042403 Camellia sinensis var. sinensis HOM05D006968 ORTHO05D008748 1.9e-60 236.5 196 61.7
CSS0021911 Camellia sinensis var. sinensis HOM05D006968 ORTHO05D008748 5.5e-60 235.0 189 63.0
CiPaw.09G132600 Carya illinoinensis HOM05D006968 ORTHO05D008748 1.6e-59 233.4 209 57.9
Cfa001060 Carpinus fangiana HOM05D006968 ORTHO05D008748 6.1e-59 231.5 207 54.1
Haze_05452 Corylus avellana HOM05D006968 ORTHO05D008748 6.1e-59 231.5 214 55.1
CANSAT35G0299 Cannabis sativa HOM05D006968 ORTHO05D008748 5.2e-58 228.4 203 54.7
Dinv32313 Davidia involucrata HOM05D006968 ORTHO05D008748 2.0e-57 226.5 190 59.5
QL05p052638 Quercus lobata HOM05D006968 ORTHO05D008748 3.4e-57 225.7 209 56.5
RcHm_v2.0_Chr5g0012541 Rosa chinensis HOM05D006968 ORTHO05D008748 5.7e-57 224.9 215 55.8
MD10G1270500 Malus domestica HOM05D006968 ORTHO05D008748 1.3e-56 223.8 207 55.1
Rhsim02G0123400 Rhododendron simsii HOM05D006968 ORTHO05D008748 1.7e-56 223.4 200 57.5
FvH4_3g06600 Fragaria vesca HOM05D006968 ORTHO05D008748 4.8e-56 221.9 215 55.8
Potri.011G076600 Populus trichocarpa HOM05D006968 ORTHO05D008748 6.3e-56 221.5 187 57.2
FAN25G0438 Fragaria x ananassa HOM05D006968 ORTHO05D008748 1.4e-55 220.3 215 55.3
FAN16G1632 Fragaria x ananassa HOM05D006968 ORTHO05D008748 1.8e-55 219.9 215 55.3
Cpa.g.sc51.7 Carica papaya HOM05D006968 ORTHO05D008748 9.1e-55 217.6 214 52.3
FAN11G1072 Fragaria x ananassa HOM05D006968 ORTHO05D008748 4.5e-54 215.3 218 54.6
Sabra11G0063700 Salix brachista HOM05D006968 ORTHO05D008748 4.5e-54 215.3 184 56.0
Manes.17G062400 Manihot esculenta HOM05D006968 ORTHO05D008748 7.7e-54 214.5 186 53.8
COL.COLO4_22824 Corchorus olitorius HOM05D006968 ORTHO05D008748 1.0e-53 214.2 209 53.6
Eucgr.E02869 Eucalyptus grandis HOM05D006968 ORTHO05D008748 1.9e-52 209.9 194 56.2
TWI73G0998 Tripterygium wilfordii HOM05D006968 ORTHO05D008748 2.5e-52 209.5 177 54.8
Prupe.4G071300 Prunus persica HOM05D006968 ORTHO05D008748 5.5e-52 208.4 207 53.6
TAR627G0978 Trochodendron aralioides HOM05D006968 ORTHO05D008748 5.5e-52 208.4 190 54.7
Lsat_1_v5_gn_0_21300 Lactuca sativa HOM05D006968 ORTHO05D008748 7.2e-52 208.0 217 52.1
Nn3g20980 Nelumbo nucifera HOM05D006968 ORTHO05D008748 1.2e-51 207.2 217 50.7
THA.LOC104798448 Tarenaya hassleriana HOM05D006968 ORTHO05D008748 6.1e-51 204.9 213 49.3
PGR042G2565 Punica granatum HOM05D006968 ORTHO05D008748 5.2e-50 201.8 181 56.9
Atru.chr10.1476 Acer truncatum HOM05D006968 ORTHO05D008748 1.2e-49 200.7 203 54.7
EL10Ac8g19830 Beta vulgaris HOM05D006968 ORTHO05D008748 1.2e-49 200.7 198 56.6
Lj2A313T77 Lonicera japonica HOM05D006968 ORTHO05D008748 1.2e-49 200.7 202 51.5
MD00G1093500 Malus domestica HOM05D006968 ORTHO05D008748 1.2e-49 200.7 207 52.2
Duzib192G0634 Durio zibethinus HOM05D006968 ORTHO05D008748 9.8e-49 197.6 204 52.5
HanXRQChr02g0055391 Helianthus annuus HOM05D006968 ORTHO05D008748 1.7e-48 196.8 205 50.2
QL05p052648 Quercus lobata HOM05D006968 ORTHO05D008748 1.7e-48 196.8 194 54.1
Glyma.13G222900 Glycine max HOM05D006968 ORTHO05D008748 2.8e-48 196.1 216 51.9
Nitab4.5_0003913g0060 Nicotiana tabacum HOM05D006968 ORTHO05D008748 3.7e-48 195.7 217 45.6
Nitab4.5_0010884g0010 Nicotiana tabacum HOM05D006968 ORTHO05D008748 4.9e-48 195.3 211 46.9
Hund21573 Selenicereus undatus HOM05D006968 ORTHO05D008748 8.3e-48 194.5 204 48.0
CAN.G257.117 Capsicum annuum HOM05D006968 ORTHO05D008748 1.1e-47 194.1 217 47.0
SalBow8G1131 Salvia bowleyana HOM05D006968 ORTHO05D008748 1.4e-47 193.7 205 51.2
Solyc02g071600.4 Solanum lycopersicum HOM05D006968 ORTHO05D008748 1.8e-47 193.4 203 46.3
SalBow8G0548 Salvia bowleyana HOM05D006968 ORTHO05D008748 4.1e-47 192.2 205 50.7
VMungo0540G1786 Vigna mungo HOM05D006968 ORTHO05D008748 5.4e-47 191.8 216 49.1
Ciclev10016662m.g Citrus clementina HOM05D006968 ORTHO05D008748 9.2e-47 191.0 206 50.0
SGA_v2.0_scaffold1G00109 Striga asiatica HOM05D006968 ORTHO05D008748 9.2e-47 191.0 207 48.3
Sc05g0006720 Simmondsia chinensis HOM05D000065 ORTHO05D000162 1.2e-46 190.7 191 53.4
arahy.Tifrunner.gnm1.ann1.5H3RNB Arachis hypogaea HOM05D006968 ORTHO05D008748 1.6e-46 190.3 206 52.4
Sopen02g020620 Solanum pennellii HOM05D006968 ORTHO05D008748 3.5e-46 189.1 204 46.1
DCAR_007922 Daucus carota HOM05D000065 ORTHO05D000162 5.9e-46 188.3 201 50.7
arahy.Tifrunner.gnm1.ann1.9V28L0 Arachis hypogaea HOM05D006968 ORTHO05D008748 1.3e-45 187.2 206 51.5
MSTRG.16189 Avicennia marina HOM05D006968 ORTHO05D008748 1.3e-45 187.2 200 50.5
Oeu042433.1 Olea europaea HOM05D006968 ORTHO05D008748 2.3e-45 186.4 204 49.0
Phvul.006G168900 Phaseolus vulgaris HOM05D006968 ORTHO05D008748 2.9e-45 186.0 202 50.0
PSO541G0278 Papaver somniferum HOM05D006968 ORTHO05D008748 3.8e-45 185.7 209 50.2
HanXRQChr02g0055401 Helianthus annuus HOM05D006968 ORTHO05D008748 1.1e-44 184.1 209 50.2
PSO675G0867 Papaver somniferum HOM05D006968 ORTHO05D008748 1.1e-44 184.1 209 49.3
CiPaw.09G132700 Carya illinoinensis HOM05D006968 ORTHO05D008748 1.5e-44 183.7 289 39.8
Psat1g192720 Pisum sativum HOM05D006968 ORTHO05D008748 3.3e-44 182.6 212 49.1
Aa31LG9G7390 Aethionema arabicum HOM05D006968 ORTHO05D008748 1.6e-43 180.3 205 45.9
Lj6g0008479 Lotus japonicus HOM05D006968 ORTHO05D008748 1.6e-43 180.3 208 46.6
Ah.02g125570 Amaranthus hybridus HOM05D006968 ORTHO05D008748 2.8e-43 179.5 205 45.9
TPR.G4467 Trifolium pratense HOM05D006968 ORTHO05D008748 4.7e-43 178.7 214 46.3
Gorai.009G159100 Gossypium raimondii HOM05D006968 ORTHO05D008748 4.0e-42 175.6 202 47.0
Thecc.06G160300 Theobroma cacao HOM05D006968 ORTHO05D008748 4.0e-42 175.6 206 45.6
PGSC0003DMG400007245 Solanum tuberosum HOM05D006968 ORTHO05D008748 5.2e-42 175.3 217 44.2
unitig_748.g7643 Utricularia gibba HOM05D001519 ORTHO05D008748 5.2e-42 175.3 206 48.1
Gohir.A05G152300 Gossypium hirsutum HOM05D006968 ORTHO05D008748 1.2e-41 174.1 202 47.0
AT5G45660 Arabidopsis thaliana HOM05D006968 ORTHO05D008748 3.4e-41 172.6 210 43.8
FAN12G2652 Fragaria x ananassa HOM05D006968 ORTHO05D008748 3.4e-41 172.6 177 53.7
Aqoxy1G01892 Aquilegia oxysepala HOM05D006968 ORTHO05D008748 7.5e-41 171.4 203 47.3
Ca_00496_v3 Cicer arietinum L. HOM05D006968 ORTHO05D008748 1.3e-40 170.6 214 46.3
Ca_30235_v3 Cicer arietinum L. HOM05D006968 ORTHO05D008748 1.3e-40 170.6 214 46.3
FvH4_4g34020 Fragaria vesca HOM05D006968 ORTHO05D008748 1.7e-40 170.2 177 53.1
Lalb_Chr18g0055011 Lupinus albus HOM05D006968 ORTHO05D008748 1.7e-40 170.2 189 47.6
AL8G12990 Arabidopsis lyrata HOM05D006968 ORTHO05D008748 2.9e-40 169.5 210 43.3
Gohir.D05G154800 Gossypium hirsutum HOM05D006968 ORTHO05D008748 2.9e-40 169.5 202 45.5
Cc02_g16200 Coffea canephora HOM05D006968 ORTHO05D008748 6.4e-40 168.3 206 48.5
Thhalv10001012m.g Eutrema salsugineum HOM05D006968 ORTHO05D008748 8.3e-40 167.9 207 43.5
Medtr2g018105 Medicago truncatula HOM05D006968 ORTHO05D008748 8.3e-40 167.9 201 46.8
AUR62027636 Chenopodium quinoa HOM05D006968 ORTHO05D008748 1.4e-39 167.2 193 47.2
Carub.0008s0235 Capsella rubella HOM05D006968 ORTHO05D008748 1.8e-39 166.8 210 43.3
A06p46470 Brassica napus HOM05D006968 ORTHO05D008748 2.4e-39 166.4 211 42.2
BraA06t27520Z Brassica rapa HOM05D006968 ORTHO05D008748 3.2e-39 166.0 212 42.0
BcaC06g34413 Brassica carinata HOM05D006968 ORTHO05D008748 4.1e-39 165.6 211 42.7
C07p28780 Brassica napus HOM05D006968 ORTHO05D008748 4.1e-39 165.6 211 42.7
CARHR176320 Cardamine hirsuta HOM05D006968 ORTHO05D008748 4.1e-39 165.6 210 42.4
Sp2g10550 Schrenkiella parvula HOM05D006968 ORTHO05D008748 4.1e-39 165.6 186 45.2
BcaC06g31531 Brassica carinata HOM05D006968 ORTHO05D008748 9.2e-39 164.5 211 41.7
BolC7t43414H Brassica oleracea HOM05D006968 ORTHO05D008748 2.0e-38 163.3 211 42.2
FAN22G0056 Fragaria x ananassa HOM05D006968 ORTHO05D008748 1.0e-37 161.0 230 44.8
CDE10G0144 Ceratophyllum demersum HOM05D000065 ORTHO05D008748 1.3e-37 160.6 184 51.1
Actinidia07663 Actinidia chinensis HOM05D006968 ORTHO05D008748 1.8e-34 150.2 209 43.5
Actinidia39540 Actinidia chinensis HOM05D006968 ORTHO05D008748 2.0e-30 136.7 159 50.3
Migut.M00982 Erythranthe guttata HOM05D006968 ORTHO05D008748 3.5e-30 136.0 153 49.7
AUR62035842 Chenopodium quinoa HOM05D006968 ORTHO05D008748 5.6e-28 128.6 120 50.8
SEGI_37019 Sequoiadendron giganteum HOM05D006968 ORTHO05D008748 9.5e-28 127.9 211 37.9
HPP92_009092 Vanilla planifolia HOM05D006968 ORTHO05D008748 9.5e-28 127.9 188 40.4
SGA_v2.0_scaffold273G46455 Striga asiatica HOM05D006968 ORTHO05D008748 8.9e-26 121.3 124 50.0
ECA248G0802 Erigeron canadensis HOM05D006968 ORTHO05D008748 1.5e-25 120.6 108 51.9
Os01g0727900 Oryza sativa ssp. japonica HOM05D006968 ORTHO05D008748 2.6e-25 119.8 190 41.6
Zm00001eb154290 Zea mays HOM05D006968 ORTHO05D008748 6.4e-24 115.2 204 39.7
Pp3c13_11400 Physcomitrium patens HOM05D006968 ORTHO05D008748 3.2e-23 112.8 189 39.2
GSVIVG01021311001 Vitis vinifera HOM05D006968 ORTHO05D008748 9.2e-23 111.3 86 60.5
Lsat_1_v5_gn_1_112261 Lactuca sativa HOM05D006968 ORTHO05D008748 1.6e-22 110.5 88 59.1
SGA_v2.0_scaffold18G08383 Striga asiatica HOM05D006968 ORTHO05D008748 2.1e-22 110.2 113 48.7
Zm00001eb045900 Zea mays HOM05D006968 ORTHO05D008748 2.1e-22 110.2 204 38.2
ATR0737G097 Amborella trichopoda HOM05D006968 ORTHO05D008748 3.5e-22 109.4 150 42.7
Lalb_Chr18g0055041 Lupinus albus HOM05D006968 ORTHO05D008748 1.5e-20 104.0 206 34.0
ECA248G3047 Erigeron canadensis HOM05D006968 ORTHO05D008748 2.0e-17 93.6 139 41.7
TWI53G1777 Tripterygium wilfordii HOM05D006968 ORTHO05D008748 1.9e-12 77.0 98 42.9
SGA_v2.0_scaffold305G47958 Striga asiatica HOM05D000046 ORTHO05D405780 8.9e-10 68.2 57 52.6
Haze_05450 Corylus avellana HOM05D006968 ORTHO05D164033 1.5e-09 67.4 50 52.0
SGA_v2.0_scaffold36G14429 Striga asiatica HOM05D003154 ORTHO05D003565 2.6e-09 66.6 67 47.8
GSVIVG01021310001 Vitis vinifera HOM05D006968 ORTHO05D008748 6.4e-08 62.0 52 55.8


User provided reference genes

Program Settings