Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0008985 Sechium edule HOM05D006481 ORTHO05D008160 0.0e+00 1427.9 822 100.0
MELO3C017986.2 Cucumis melo HOM05D006481 ORTHO05D008160 6.1e-240 834.7 828 65.2
CsaV3_4G000490 Cucumis sativus L. HOM05D006481 ORTHO05D008160 5.3e-236 821.6 829 66.5
ClCG10G010570 Citrullus lanatus HOM05D006481 ORTHO05D008160 2.0e-214 750.0 702 64.2
CiPaw.05G015400 Carya illinoinensis HOM05D006481 ORTHO05D008160 3.3e-153 546.6 848 45.9
Haze_10252 Corylus avellana HOM05D006481 ORTHO05D008160 1.1e-148 531.6 837 48.1
Cfa004657 Carpinus fangiana HOM05D006481 ORTHO05D008160 2.4e-148 530.4 844 45.4
Manes.10G058310 Manihot esculenta HOM05D006481 ORTHO05D008160 1.1e-145 521.5 867 47.2
Dinv15788 Davidia involucrata HOM05D006481 ORTHO05D008160 1.2e-142 511.5 880 45.3
COL.COLO4_32543 Corchorus olitorius HOM05D006481 ORTHO05D008160 7.6e-142 508.8 807 48.6
Thecc.02G113600 Theobroma cacao HOM05D006481 ORTHO05D008160 1.7e-141 507.7 848 46.9
Gohir.D12G020600 Gossypium hirsutum HOM05D006481 ORTHO05D008160 7.1e-140 502.3 837 45.8
QL11p031947 Quercus lobata HOM05D006481 ORTHO05D008160 1.1e-135 488.4 869 44.3
TAR376G0872 Trochodendron aralioides HOM05D006481 ORTHO05D008160 2.2e-133 480.7 883 43.7
Gorai.008G021000 Gossypium raimondii HOM05D006481 ORTHO05D008160 1.1e-132 478.4 807 45.8
Dinv42219 Davidia involucrata HOM05D006481 ORTHO05D008160 2.1e-131 474.2 894 44.1
Cpa.g.sc106.79 Carica papaya HOM05D006481 ORTHO05D008160 2.7e-131 473.8 1018 41.3
Gohir.A12G020400 Gossypium hirsutum HOM05D006481 ORTHO05D008160 1.8e-130 471.1 807 45.0
TWI14G1262 Tripterygium wilfordii HOM05D006481 ORTHO05D008160 1.3e-128 464.9 868 41.6
Potri.001G296700 Populus trichocarpa HOM05D006481 ORTHO05D008160 5.3e-127 459.5 846 43.9
Duzib132G1015 Durio zibethinus HOM05D006481 ORTHO05D008160 1.5e-126 458.0 848 45.4
Lalb_Chr02g0145111 Lupinus albus HOM05D006481 ORTHO05D008160 2.0e-126 457.6 871 42.7
Prupe.8G140600 Prunus persica HOM05D006481 ORTHO05D008160 3.4e-126 456.8 848 43.6
Actinidia34372 Actinidia chinensis HOM05D006481 ORTHO05D008160 2.9e-125 453.8 885 41.9
RcHm_v2.0_Chr6g0252931 Rosa chinensis HOM05D006481 ORTHO05D008160 1.4e-124 451.4 856 43.9
CSS0020952 Camellia sinensis var. sinensis HOM05D006481 ORTHO05D008160 2.5e-124 450.7 883 43.4
Potri.009G090900 Populus trichocarpa HOM05D006481 ORTHO05D008160 2.5e-124 450.7 847 41.7
CSS0029586 Camellia sinensis var. sinensis HOM05D006481 ORTHO05D008160 7.2e-124 449.1 884 43.3
FAN27G2785 Fragaria x ananassa HOM05D006481 ORTHO05D008160 3.6e-123 446.8 848 43.0
FvH4_2g03900 Fragaria vesca HOM05D006481 ORTHO05D008160 5.1e-122 443.0 848 42.8
Sopen01g049510 Solanum pennellii HOM05D006481 ORTHO05D008160 5.7e-121 439.5 871 42.3
Lj5g0022753 Lotus japonicus HOM05D006481 ORTHO05D008160 2.2e-120 437.6 806 44.8
Nitab4.5_0001105g0200 Nicotiana tabacum HOM05D006481 ORTHO05D008160 4.8e-120 436.4 696 44.7
Solyc01g107260.4 Solanum lycopersicum HOM05D006481 ORTHO05D008160 4.8e-120 436.4 880 42.0
FAN15G2146 Fragaria x ananassa HOM05D006481 ORTHO05D008160 6.3e-120 436.0 681 44.6
Medtr1g106795 Medicago truncatula HOM05D006481 ORTHO05D008160 4.5e-118 429.9 798 45.2
Nitab4.5_0004685g0050 Nicotiana tabacum HOM05D006481 ORTHO05D008160 1.1e-116 425.2 695 44.2
MD05G1096200 Malus domestica HOM05D006481 ORTHO05D008160 4.2e-116 423.3 720 43.5
Ca_11047_v3 Cicer arietinum L. HOM05D006481 ORTHO05D008160 1.6e-115 421.4 798 44.2
arahy.Tifrunner.gnm1.ann1.RQ9967 Arachis hypogaea HOM05D006481 ORTHO05D008160 4.4e-113 413.3 812 43.5
vmacro01976 Vaccinium macrocarpon HOM05D006481 ORTHO05D008160 4.4e-113 413.3 592 48.8
Ciclev10027845m.g Citrus clementina HOM05D006481 ORTHO05D008160 5.7e-113 412.9 821 39.7
Glyma.20G132200 Glycine max HOM05D006481 ORTHO05D008160 7.4e-113 412.5 438 57.5
MSTRG.16692 Avicennia marina HOM05D006481 ORTHO05D008160 3.7e-112 410.2 856 38.9
DCAR_021965 Daucus carota HOM05D006481 ORTHO05D008160 1.4e-111 408.3 962 37.4
CAN.G606.42 Capsicum annuum HOM05D006481 ORTHO05D008160 3.1e-111 407.1 750 41.5
Cc02_g30880 Coffea canephora HOM05D006481 ORTHO05D008160 2.2e-109 401.0 701 42.1
GSVIVG01037865001 Vitis vinifera HOM05D006481 ORTHO05D008160 3.8e-109 400.2 494 51.6
arahy.Tifrunner.gnm1.ann1.IH69Y8 Arachis hypogaea HOM05D006481 ORTHO05D008160 5.0e-109 399.8 809 43.5
PSO541G1903 Papaver somniferum HOM05D006481 ORTHO05D008160 1.9e-108 397.9 861 40.5
PSO675G3182 Papaver somniferum HOM05D006481 ORTHO05D008160 1.9e-108 397.9 862 40.5
Atru.BG.62.p Acer truncatum HOM05D006481 ORTHO05D008160 4.2e-108 396.7 440 56.1
Psat6g216240 Pisum sativum HOM05D006481 ORTHO05D008160 2.3e-106 391.0 404 58.9
Sabra09G0070200 Salix brachista HOM05D006481 ORTHO05D008160 3.9e-106 390.2 700 43.1
Sabra16G0185800 Salix brachista HOM05D006481 ORTHO05D008160 1.1e-105 388.7 845 40.2
Aqoxy6G02732 Aquilegia oxysepala HOM05D006481 ORTHO05D008160 1.3e-104 385.2 724 41.7
SalBow6G0734 Salvia bowleyana HOM05D006481 ORTHO05D008160 1.4e-103 381.7 646 44.1
Lj5A217G88 Lonicera japonica HOM05D006481 ORTHO05D008160 1.8e-103 381.3 796 41.1
TPR.G27130 Trifolium pratense HOM05D006481 ORTHO05D008160 3.1e-103 380.6 825 41.2
AUR62027350 Chenopodium quinoa HOM05D006481 ORTHO05D008160 1.2e-102 378.6 622 45.7
VMungo0720G0067 Vigna mungo HOM05D006481 ORTHO05D008160 2.0e-102 377.9 807 40.6
Phvul.007G043300 Phaseolus vulgaris HOM05D006481 ORTHO05D008160 2.9e-101 374.0 835 39.3
Ah.14g085520 Amaranthus hybridus HOM05D006481 ORTHO05D008160 3.8e-101 373.6 865 38.0
AUR62031332 Chenopodium quinoa HOM05D006481 ORTHO05D008160 6.5e-101 372.9 651 43.6
Migut.B00421 Erythranthe guttata HOM05D006481 ORTHO05D008160 8.5e-101 372.5 665 42.7
unitig_744.g24217 Utricularia gibba HOM05D006481 ORTHO05D008160 1.6e-99 368.2 663 42.1
Oeu021369.1 Olea europaea HOM05D006481 ORTHO05D008160 4.7e-99 366.7 601 45.1
THA.LOC104825834 Tarenaya hassleriana HOM05D006481 ORTHO05D008160 6.3e-96 356.3 454 52.4
PGSC0003DMG400025848 Solanum tuberosum HOM05D006481 ORTHO05D008160 7.0e-95 352.8 755 38.0
Carub.0001s3908 Capsella rubella HOM05D006481 ORTHO05D008160 5.5e-92 343.2 705 39.4
AT1G49870 Arabidopsis thaliana HOM05D006481 ORTHO05D008160 1.2e-91 342.0 685 41.0
Aa31LG10G4220 Aethionema arabicum HOM05D006481 ORTHO05D008160 2.7e-91 340.9 701 40.1
EL10Ac8g19363 Beta vulgaris HOM05D006481 ORTHO05D008160 2.7e-91 340.9 823 37.5
AL1G57410 Arabidopsis lyrata HOM05D006481 ORTHO05D008160 3.6e-91 340.5 690 41.7
RhsimUnG0125900 Rhododendron simsii HOM05D006481 ORTHO05D008160 3.6e-91 340.5 599 43.4
ECA234G0568 Erigeron canadensis HOM05D006481 ORTHO05D008160 3.0e-90 337.4 449 46.8
Rhsim11G0154700 Rhododendron simsii HOM05D006481 ORTHO05D008160 6.8e-90 336.3 646 41.2
Sp1g36750 Schrenkiella parvula HOM05D006481 ORTHO05D008160 2.2e-88 331.3 714 39.2
Peaxi162Scf00016g02732 Petunia axillaris HOM05D006481 ORTHO05D008160 2.8e-88 330.9 693 38.4
HanXRQChr16g0514441 Helianthus annuus HOM05D006481 ORTHO05D008160 6.3e-88 329.7 381 50.9
Lsat_1_v5_gn_5_114361 Lactuca sativa HOM05D006481 ORTHO05D008160 1.1e-87 328.9 401 49.9
ATR0030G005 Amborella trichopoda HOM05D006481 ORTHO05D008160 1.5e-84 318.5 575 42.8
CARHR039920 Cardamine hirsuta HOM05D006481 ORTHO05D008160 4.2e-84 317.0 624 41.3
BcaB04g17289 Brassica carinata HOM05D006481 ORTHO05D008160 9.5e-84 315.8 647 39.9
Os03g0604600 Oryza sativa ssp. japonica HOM05D006481 ORTHO05D008160 4.7e-83 313.5 481 44.3
A08p03520 Brassica napus HOM05D006481 ORTHO05D008160 6.1e-83 313.2 698 39.5
Thhalv10011233m.g Eutrema salsugineum HOM05D006481 ORTHO05D008160 6.1e-83 313.2 699 38.1
SGA_v2.0_scaffold225G43011 Striga asiatica HOM05D006481 ORTHO05D008160 8.9e-82 309.3 450 46.7
BolC8t47171H Brassica oleracea HOM05D006481 ORTHO05D008160 2.0e-81 308.1 702 39.7
BraA08t32385Z Brassica rapa HOM05D006481 ORTHO05D008160 1.3e-80 305.4 701 39.4
Eucgr.I01079 Eucalyptus grandis HOM05D006481 ORTHO05D008160 1.3e-80 305.4 709 41.3
C08p03680 Brassica napus HOM05D006481 ORTHO05D008160 1.8e-79 301.6 644 40.5
TAR628G0609 Trochodendron aralioides HOM05D006481 ORTHO05D008160 4.1e-79 300.4 405 49.9
Zm00001eb050130 Zea mays HOM05D006481 ORTHO05D008160 1.2e-75 288.9 623 39.6
HPP92_017760 Vanilla planifolia HOM05D006481 ORTHO05D008160 1.3e-72 278.9 666 35.6
CDE04G1272 Ceratophyllum demersum HOM05D006481 ORTHO05D008160 9.9e-49 199.5 350 42.6
SEGI_11188 Sequoiadendron giganteum HOM05D006481 ORTHO05D008160 8.4e-48 196.4 652 31.9
SEGI_37018 Sequoiadendron giganteum HOM05D006481 ORTHO05D008160 8.4e-48 196.4 652 31.9
MD10G1102400 Malus domestica HOM05D006481 ORTHO05D008160 1.1e-39 169.5 158 60.1
Pp3c18_18840 Physcomitrium patens HOM05D006481 ORTHO05D008160 5.6e-36 157.1 404 36.4
Sc14g0002570 Simmondsia chinensis HOM05D006481 ORTHO05D008160 1.5e-33 149.1 637 30.0
SEGI_25924 Sequoiadendron giganteum HOM05D006481 ORTHO05D008160 4.9e-32 144.1 669 27.8
SMO196G0099 Selaginella moellendorffii HOM05D006481 ORTHO05D008160 1.9e-28 132.1 409 32.0
SHI05066 Sapria himalayana HOM05D006481 ORTHO05D008160 3.1e-26 124.8 133 52.6
FAN20G1292 Fragaria x ananassa HOM05D006481 ORTHO05D008160 1.3e-24 119.4 542 32.8
Hma1.2p1_1361F.1_g278150 Hydrangea macrophylla HOM05D006481 ORTHO05D008160 7.9e-22 110.2 167 44.9
CBR_g49330 Chara braunii HOM05D006481 ORTHO05D008160 6.2e-19 100.5 244 36.9
MD10G1102500 Malus domestica HOM05D006481 ORTHO05D008160 2.4e-18 98.6 150 47.3
EL10Ac6g13964 Beta vulgaris HOM05D006481 ORTHO05D008160 5.1e-13 80.9 427 29.5
Hma1.2p1_0000F.1_g001000 Hydrangea macrophylla HOM05D006481 ORTHO05D008160 6.3e-11 73.9 245 31.8
Hma1.2p1_0883F.1_g232290 Hydrangea macrophylla HOM05D006481 ORTHO05D008160 3.1e-10 71.6 78 55.1
SHI05065 Sapria himalayana HOM05D006481 ORTHO05D008160 1.2e-09 69.7 138 42.8
Duzib052G0964 Durio zibethinus HOM05D006481 ORTHO05D008160 1.5e-09 69.3 135 35.6
RcHm_v2.0_Chr4g0423461 Rosa chinensis HOM05D006481 ORTHO05D000001 8.5e-08 63.5 117 38.5
BcaC05g27423 Brassica carinata HOM05D006481 ORTHO05D008160 5.5e-07 60.8 47 61.7
TAR628G0206 Trochodendron aralioides HOM05D006481 ORTHO05D008160 1.2e-06 59.7 172 35.5


User provided reference genes

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