Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0008919 Sechium edule HOM05D005221 ORTHO05D006355 9.7e-125 450.3 248 100.0
MELO3C014491.2 Cucumis melo HOM05D005221 ORTHO05D006355 9.5e-88 327.4 252 80.2
Sed0012211 Sechium edule HOM05D005221 ORTHO05D006355 2.8e-87 325.9 245 78.8
ClCG06G006000 Citrullus lanatus HOM05D005221 ORTHO05D006355 4.4e-85 318.5 257 78.2
CsaV3_6G038280 Cucumis sativus L. HOM05D005221 ORTHO05D006355 4.9e-84 315.1 259 76.1
QL06p003360 Quercus lobata HOM05D005221 ORTHO05D006355 1.4e-70 270.4 248 67.3
TWI53G0458 Tripterygium wilfordii HOM05D005221 ORTHO05D006355 1.2e-69 267.3 249 65.9
Duzib151G0158 Durio zibethinus HOM05D005221 ORTHO05D006355 2.2e-68 263.1 244 65.6
Manes.03G181200 Manihot esculenta HOM05D005221 ORTHO05D006355 3.7e-68 262.3 245 66.5
MD16G1188800 Malus domestica HOM05D005221 ORTHO05D006355 7.1e-67 258.1 237 67.5
Thecc.04G227300 Theobroma cacao HOM05D005221 ORTHO05D006355 2.1e-66 256.5 243 66.7
FAN07G2107 Fragaria x ananassa HOM05D005221 ORTHO05D006355 4.6e-66 255.4 246 64.6
RcHm_v2.0_Chr4g0416801 Rosa chinensis HOM05D005221 ORTHO05D006355 4.6e-66 255.4 244 63.1
FAN12G4146 Fragaria x ananassa HOM05D005221 ORTHO05D006355 6.0e-66 255.0 244 65.2
FvH4_4g15060 Fragaria vesca HOM05D005221 ORTHO05D006355 7.8e-66 254.6 246 64.2
COL.COLO4_06196 Corchorus olitorius HOM05D005221 ORTHO05D006355 1.0e-65 254.2 257 64.6
FAN22G0945 Fragaria x ananassa HOM05D005221 ORTHO05D006355 1.3e-65 253.8 246 63.8
Manes.15G026700 Manihot esculenta HOM05D005221 ORTHO05D006355 1.3e-65 253.8 249 64.7
CSS0023930 Camellia sinensis var. sinensis HOM05D005221 ORTHO05D006355 1.1e-64 250.8 244 63.9
Duzib212G0790 Durio zibethinus HOM05D005221 ORTHO05D006355 1.1e-64 250.8 243 66.3
TAR362G0899 Trochodendron aralioides HOM05D005221 ORTHO05D006355 1.9e-64 250.0 245 62.0
Potri.010G090700 Populus trichocarpa HOM05D005221 ORTHO05D006355 3.3e-64 249.2 245 65.7
Prupe.1G155500 Prunus persica HOM05D005221 ORTHO05D006355 5.6e-64 248.4 245 64.5
Cfa015617 Carpinus fangiana HOM05D005221 ORTHO05D006355 7.3e-64 248.1 245 64.5
Cpa.g.sc8.322 Carica papaya HOM05D005221 ORTHO05D006355 9.5e-64 247.7 250 63.6
Potri.008G150300 Populus trichocarpa HOM05D005221 ORTHO05D006355 1.2e-63 247.3 245 65.3
Lj5g0028012 Lotus japonicus HOM05D005221 ORTHO05D006355 1.8e-62 243.4 255 60.8
Sabra08G0114400 Salix brachista HOM05D005221 ORTHO05D006355 6.8e-62 241.5 245 62.0
Peaxi162Scf00437g00052 Petunia axillaris HOM05D005221 ORTHO05D006355 1.2e-61 240.7 238 60.5
Duzib052G0196 Durio zibethinus HOM05D005221 ORTHO05D006355 2.6e-61 239.6 228 58.8
Cc03_g03470 Coffea canephora HOM05D005221 ORTHO05D006355 5.8e-61 238.4 243 58.8
Sabra10G0052800 Salix brachista HOM05D005221 ORTHO05D006355 5.8e-61 238.4 248 62.5
Nitab4.5_0001545g0020 Nicotiana tabacum HOM05D005221 ORTHO05D006355 9.9e-61 237.7 236 59.3
CiPaw.02G095300 Carya illinoinensis HOM05D005221 ORTHO05D006355 1.7e-60 236.9 250 60.8
Ciclev10005615m.g Citrus clementina HOM05D005221 ORTHO05D006355 1.7e-60 236.9 276 61.2
TWI09G0254 Tripterygium wilfordii HOM05D005221 ORTHO05D006355 2.2e-60 236.5 243 62.1
MD13G1188400 Malus domestica HOM05D005221 ORTHO05D006355 2.9e-60 236.1 237 61.6
Oeu037551.1 Olea europaea HOM05D005221 ORTHO05D006355 2.9e-60 236.1 244 57.8
Ca_10924_v3 Cicer arietinum L. HOM05D005221 ORTHO05D006355 3.8e-60 235.7 262 58.8
CiPaw.01G163700 Carya illinoinensis HOM05D005221 ORTHO05D006355 1.1e-59 234.2 219 65.3
Nitab4.5_0000260g0100 Nicotiana tabacum HOM05D005221 ORTHO05D006355 1.4e-59 233.8 236 60.6
Phvul.007G054700 Phaseolus vulgaris HOM05D005221 ORTHO05D006355 4.2e-59 232.3 257 59.5
Actinidia23488 Actinidia chinensis HOM05D005221 ORTHO05D006355 9.2e-59 231.1 246 59.8
TPR.G5529 Trifolium pratense HOM05D005221 ORTHO05D006355 1.3e-57 227.3 255 56.9
Glyma.10G249900 Glycine max HOM05D005221 ORTHO05D006355 1.7e-57 226.9 261 58.2
Glyma.20G143700 Glycine max HOM05D005221 ORTHO05D006355 5.1e-57 225.3 255 57.3
Medtr1g104840 Medicago truncatula HOM05D005221 ORTHO05D006355 5.1e-57 225.3 249 58.6
CAN.G668.8 Capsicum annuum HOM05D005221 ORTHO05D006355 8.7e-57 224.6 237 54.4
Aqoxy2G03348 Aquilegia oxysepala HOM05D005221 ORTHO05D006355 1.1e-56 224.2 242 57.0
VMungo0720G0147 Vigna mungo HOM05D005221 ORTHO05D006355 1.1e-56 224.2 255 56.9
Nn4g26263 Nelumbo nucifera HOM05D005221 ORTHO05D006355 3.3e-56 222.6 233 59.2
Rhsim04G0205100 Rhododendron simsii HOM05D005221 ORTHO05D006355 4.7e-55 218.8 246 56.5
Gohir.D09G216800 Gossypium hirsutum HOM05D005221 ORTHO05D006355 6.2e-55 218.4 243 58.0
Gohir.A09G214300 Gossypium hirsutum HOM05D005221 ORTHO05D006355 8.1e-55 218.0 245 59.6
Nn1g02242 Nelumbo nucifera HOM05D005221 ORTHO05D006355 1.1e-54 217.6 257 55.6
CAN.G873.5 Capsicum annuum HOM05D005221 ORTHO05D006355 1.8e-54 216.9 249 56.2
MSTRG.21844 Avicennia marina HOM05D005221 ORTHO05D006355 2.4e-54 216.5 233 58.8
Gorai.006G237300 Gossypium raimondii HOM05D005221 ORTHO05D006355 3.1e-54 216.1 243 57.6
Sopen09g030550 Solanum pennellii HOM05D005221 ORTHO05D006355 4.0e-54 215.7 242 56.6
PGSC0003DMG400031851 Solanum tuberosum HOM05D005221 ORTHO05D006355 4.0e-54 215.7 243 55.6
Solyc06g054280.1 Solanum lycopersicum HOM05D005221 ORTHO05D006355 9.0e-54 214.5 240 57.5
Sopen06g019400 Solanum pennellii HOM05D005221 ORTHO05D006355 1.2e-53 214.2 240 56.7
FAN17G2349 Fragaria x ananassa HOM05D005221 ORTHO05D006355 2.0e-53 213.4 244 52.5
Solyc09g075740.1 Solanum lycopersicum HOM05D005221 ORTHO05D006355 2.0e-53 213.4 242 55.8
PGSC0003DMG400011822 Solanum tuberosum HOM05D005221 ORTHO05D006355 4.4e-53 212.2 240 56.7
DCAR_030618 Daucus carota HOM05D005221 ORTHO05D006355 5.8e-53 211.8 245 55.9
Nitab4.5_0000321g0080 Nicotiana tabacum HOM05D005221 ORTHO05D006355 1.3e-52 210.7 237 55.3
EL10As3g23360 Beta vulgaris HOM05D005221 ORTHO05D006355 2.4e-51 206.5 251 53.0
Peaxi162Scf00642g00022 Petunia axillaris HOM05D005221 ORTHO05D006355 3.2e-51 206.1 240 56.7
CANSAT78G1299 Cannabis sativa HOM05D005221 ORTHO05D006355 7.1e-51 204.9 272 52.9
Lalb_Chr06g0160581 Lupinus albus HOM05D005221 ORTHO05D006355 6.0e-50 201.8 249 56.6
Eucgr.B01092 Eucalyptus grandis HOM05D005221 ORTHO05D006355 1.9e-48 196.8 267 50.6
Sc13g0004240 Simmondsia chinensis HOM05D005221 ORTHO05D006355 1.9e-48 196.8 268 53.4
Dinv38425 Davidia involucrata HOM05D005221 ORTHO05D006355 7.3e-48 194.9 173 68.2
Sc19g0004310 Simmondsia chinensis HOM05D005221 ORTHO05D006355 9.6e-48 194.5 265 52.8
DCAR_002395 Daucus carota HOM05D005221 ORTHO05D006355 2.8e-47 193.0 245 55.1
ECA234G2268 Erigeron canadensis HOM05D005221 ORTHO05D006355 1.1e-46 191.0 239 50.2
THA.LOC104802759 Tarenaya hassleriana HOM05D005221 ORTHO05D006355 4.0e-46 189.1 245 56.3
Lj3P740T18 Lonicera japonica HOM05D005221 ORTHO05D006355 5.3e-46 188.7 247 52.2
PGR142G0441 Punica granatum HOM05D005221 ORTHO05D006355 9.0e-46 188.0 285 51.9
TAR636G2071 Trochodendron aralioides HOM05D002203 ORTHO05D002647 7.6e-45 184.9 202 60.9
SGA_v2.0_scaffold10G05107 Striga asiatica HOM05D005221 ORTHO05D006355 1.3e-44 184.1 251 53.8
DCAR_024599 Daucus carota HOM05D005221 ORTHO05D006355 6.4e-44 181.8 245 49.0
Carub.0003s0539 Capsella rubella HOM05D005221 ORTHO05D006355 5.4e-43 178.7 247 50.6
Aa31LG5G16450 Aethionema arabicum HOM05D005221 ORTHO05D006355 1.2e-42 177.6 241 54.4
Migut.N00171 Erythranthe guttata HOM05D005221 ORTHO05D006355 1.2e-42 177.6 245 50.6
AL3G16790 Arabidopsis lyrata HOM05D005221 ORTHO05D006355 2.7e-42 176.4 249 48.6
BraA05t22925Z Brassica rapa HOM05D005221 ORTHO05D006355 1.0e-41 174.5 242 48.8
Hma1.2p1_0511F.1_g168910 Hydrangea macrophylla HOM05D005221 ORTHO05D006355 5.1e-41 172.2 222 54.5
Oeu029026.1 Olea europaea HOM05D005221 ORTHO05D006355 8.7e-41 171.4 171 59.1
AT3G05980 Arabidopsis thaliana HOM05D005221 ORTHO05D006355 1.1e-40 171.0 247 48.2
CARHR080490 Cardamine hirsuta HOM05D005221 ORTHO05D006355 1.5e-40 170.6 259 50.6
HanXRQChr10g0296561 Helianthus annuus HOM05D005221 ORTHO05D006355 1.9e-40 170.2 241 50.6
Lsat_1_v5_gn_5_148500 Lactuca sativa HOM05D005221 ORTHO05D006355 5.6e-40 168.7 242 51.2
MSTRG.4014 Avicennia marina HOM05D005221 ORTHO05D006355 7.4e-40 168.3 241 49.0
HanXRQChr04g0110301 Helianthus annuus HOM05D005221 ORTHO05D006355 1.3e-39 167.5 236 46.6
A05p42050 Brassica napus HOM05D005221 ORTHO05D006355 2.1e-39 166.8 242 48.3
Atru.chr4.2515 Acer truncatum HOM05D005221 ORTHO05D006355 2.8e-39 166.4 251 51.0
THA.LOC104818779 Tarenaya hassleriana HOM05D005221 ORTHO05D006355 2.8e-39 166.4 266 46.2
Thhalv10021379m.g Eutrema salsugineum HOM05D005221 ORTHO05D006355 9.0e-38 161.4 249 49.0
Nitab4.5_0007609g0020 Nicotiana tabacum HOM05D005221 ORTHO05D006355 9.0e-38 161.4 208 51.9
MBI17_g31753_MAGBIO Magnolia biondii HOM05D005221 ORTHO05D006355 1.2e-37 161.0 230 44.8
BcaC05g30072 Brassica carinata HOM05D005221 ORTHO05D006355 4.5e-37 159.1 246 45.9
Aqoxy5G00503 Aquilegia oxysepala HOM05D005221 ORTHO05D006355 9.9e-37 157.9 250 48.8
BolC3t13571H Brassica oleracea HOM05D005221 ORTHO05D006355 1.3e-36 157.5 232 50.4
BraA01t04457Z Brassica rapa HOM05D005221 ORTHO05D006355 1.3e-36 157.5 250 44.4
C05p61280 Brassica napus HOM05D005221 ORTHO05D006355 1.7e-36 157.1 246 48.0
BolC5t34787H Brassica oleracea HOM05D005221 ORTHO05D006355 1.7e-36 157.1 246 48.0
BraA03t10262Z Brassica rapa HOM05D005221 ORTHO05D006355 4.9e-36 155.6 244 46.3
BcaC09g47869 Brassica carinata HOM05D005221 ORTHO05D006355 8.4e-36 154.8 245 49.4
BolC1t05645H Brassica oleracea HOM05D005221 ORTHO05D006355 8.4e-36 154.8 247 49.0
Sp3g04920 Schrenkiella parvula HOM05D005221 ORTHO05D006355 8.4e-36 154.8 252 48.0
Lj6P597T84 Lonicera japonica HOM05D005221 ORTHO05D006355 2.5e-35 153.3 173 57.2
BcaB01g04866 Brassica carinata HOM05D005221 ORTHO05D006355 6.0e-34 148.7 240 47.1
A03p09440 Brassica napus HOM05D005221 ORTHO05D006355 6.0e-34 148.7 245 47.3
BolC9t58548H Brassica oleracea HOM05D005221 ORTHO05D006355 1.0e-33 147.9 250 46.8
BcaB01g05141 Brassica carinata HOM05D005221 ORTHO05D006355 1.3e-33 147.5 231 49.8
C03p11020 Brassica napus HOM05D005221 ORTHO05D006355 1.8e-33 147.1 240 47.9
PGR004G1499 Punica granatum HOM05D005221 ORTHO05D006355 3.9e-33 146.0 279 40.9
A10p20340 Brassica napus HOM05D005221 ORTHO05D006355 1.1e-32 144.4 253 45.5
BraA10t44105Z Brassica rapa HOM05D005221 ORTHO05D006355 1.1e-32 144.4 253 45.5
BcaC04g18576 Brassica carinata HOM05D005221 ORTHO05D006355 2.5e-32 143.3 255 45.1
C09p56940 Brassica napus HOM05D005221 ORTHO05D006355 2.5e-32 143.3 255 45.1
Thhalv10016073m.g Eutrema salsugineum HOM05D005221 ORTHO05D006355 9.6e-32 141.4 254 47.6
Ah.04g154490 Amaranthus hybridus HOM05D005221 ORTHO05D006355 4.8e-31 139.0 209 52.6
AT5G19340 Arabidopsis thaliana HOM05D005221 ORTHO05D006355 9.0e-30 134.8 279 41.9
arahy.Tifrunner.gnm1.ann1.0RM5BV Arachis hypogaea HOM05D005221 ORTHO05D006355 7.6e-29 131.7 248 44.0
Carub.0006s1768 Capsella rubella HOM05D005221 ORTHO05D006355 1.3e-28 131.0 280 40.4
Hma1.2p1_0995F.1_g245620 Hydrangea macrophylla HOM05D005221 ORTHO05D006355 1.3e-28 131.0 156 50.6
Sp6g25070 Schrenkiella parvula HOM05D005221 ORTHO05D006355 1.8e-25 120.6 257 42.8
CARHR193620 Cardamine hirsuta HOM05D005221 ORTHO05D006355 5.1e-25 119.0 259 40.2
AL6G30830 Arabidopsis lyrata HOM05D005221 ORTHO05D006355 6.7e-25 118.6 249 40.6
BcaB08g36581 Brassica carinata HOM05D005221 ORTHO05D006355 9.7e-24 114.8 245 41.2
PSO302G0248 Papaver somniferum HOM05D005221 ORTHO05D006355 1.3e-23 114.4 165 46.1
SGA_v2.0_scaffold237G43792 Striga asiatica HOM05D005221 ORTHO05D006355 8.2e-23 111.7 252 35.7
SGA_v2.0_scaffold39G15291 Striga asiatica HOM05D005221 ORTHO05D006355 1.5e-21 107.5 233 38.2
BcaNung07026 Brassica carinata HOM05D005221 ORTHO05D006355 2.6e-21 106.7 158 43.7
AUR62038640 Chenopodium quinoa HOM05D005221 ORTHO05D006355 1.4e-17 94.4 173 38.7
Nn5g28878 Nelumbo nucifera HOM05D005221 ORTHO05D006355 3.3e-16 89.7 104 50.0
Psat6g208720 Pisum sativum HOM05D005221 ORTHO05D006355 1.8e-14 84.0 85 67.1
Nn3g20708 Nelumbo nucifera HOM05D005221 ORTHO05D006355 2.0e-13 80.5 98 48.0
AUR62038093 Chenopodium quinoa HOM05D005221 ORTHO05D006355 1.9e-11 73.9 149 35.6
Nn1g04890 Nelumbo nucifera HOM05D002458 ORTHO05D002603 5.5e-11 72.4 138 39.1
Nitab4.5_0005062g0030 Nicotiana tabacum HOM05D002458 ORTHO05D002603 1.0e-09 68.2 135 38.5
TAR628G0915 Trochodendron aralioides HOM05D002458 ORTHO05D002603 2.3e-09 67.0 139 35.3
CiPaw.01G019100 Carya illinoinensis HOM05D002458 ORTHO05D002603 3.0e-09 66.6 135 38.5
MBI06_g24647_MAGBIO Magnolia biondii HOM05D002458 ORTHO05D002603 3.9e-09 66.2 139 39.6
Manes.12G102900 Manihot esculenta HOM05D002458 ORTHO05D002603 5.1e-09 65.9 138 37.7
Nitab4.5_0000728g0040 Nicotiana tabacum HOM05D002458 ORTHO05D002603 6.7e-09 65.5 135 38.5
Sopen02g015150 Solanum pennellii HOM05D002458 ORTHO05D002603 1.1e-08 64.7 136 38.2
ATR0626G396 Amborella trichopoda HOM05D005221 ORTHO05D006355 2.0e-08 63.9 155 31.6
Nn5g30245 Nelumbo nucifera HOM05D002458 ORTHO05D002603 2.0e-08 63.9 141 37.6
CSS0037574 Camellia sinensis var. sinensis HOM05D002458 ORTHO05D002603 2.6e-08 63.5 135 40.0
Peaxi162Scf00450g00733 Petunia axillaris HOM05D002458 ORTHO05D002603 2.6e-08 63.5 135 36.3
Actinidia16500 Actinidia chinensis HOM05D002458 ORTHO05D002603 7.4e-08 62.0 136 36.8
Manes.13G127400 Manihot esculenta HOM05D002458 ORTHO05D002603 7.4e-08 62.0 138 34.8
Solyc02g065020.2 Solanum lycopersicum HOM05D002458 ORTHO05D002603 7.4e-08 62.0 136 36.8
Duzib187G0864 Durio zibethinus HOM05D002458 ORTHO05D002603 1.3e-07 61.2 137 36.5
Potri.007G042600 Populus trichocarpa HOM05D002458 ORTHO05D002603 1.7e-07 60.8 140 35.7
Dinv29979 Davidia involucrata HOM05D002458 ORTHO05D002603 3.7e-07 59.7 136 38.2
Duzib147G0558 Durio zibethinus HOM05D002458 ORTHO05D002603 4.8e-07 59.3 137 35.0
Aqoxy5G01250 Aquilegia oxysepala HOM05D002458 ORTHO05D002603 8.2e-07 58.5 137 35.8
MD15G1282400 Malus domestica HOM05D002458 ORTHO05D002603 8.2e-07 58.5 153 35.9
TAR376G0738 Trochodendron aralioides HOM05D002458 ORTHO05D002603 8.2e-07 58.5 143 31.5
Haze_15416 Corylus avellana HOM05D002458 ORTHO05D002603 1.4e-06 57.8 136 35.3
CsaV3_6G043200 Cucumis sativus L. HOM05D002458 ORTHO05D002603 1.4e-06 57.8 156 31.4
PGSC0003DMG400025476 Solanum tuberosum HOM05D002458 ORTHO05D002603 1.4e-06 57.8 137 38.0
PGSC0003DMG400015780 Solanum tuberosum HOM05D002458 ORTHO05D002603 1.8e-06 57.4 135 36.3
Thecc.01G054400 Theobroma cacao HOM05D002458 ORTHO05D002603 1.8e-06 57.4 137 35.0
MSTRG.23756 Avicennia marina HOM05D002458 ORTHO05D002603 2.4e-06 57.0 138 33.3
Peaxi162Scf00232g01110 Petunia axillaris HOM05D003370 ORTHO05D003848 2.4e-06 57.0 149 30.2
DCAR_010901 Daucus carota HOM05D001349 ORTHO05D008727 3.1e-06 56.6 141 34.0
CAN.G165.22 Capsicum annuum HOM05D002458 ORTHO05D002603 4.1e-06 56.2 135 35.6
GSVIVG01022142001 Vitis vinifera HOM05D002458 ORTHO05D002603 7.0e-06 55.5 136 33.8
Cpa.g.sc55.162 Carica papaya HOM05D002458 ORTHO05D002603 9.1e-06 55.1 85 44.7
MELO3C007556.2 Cucumis melo HOM05D002458 ORTHO05D002603 9.1e-06 55.1 156 30.8
Phvul.003G244300 Phaseolus vulgaris HOM05D002458 ORTHO05D002603 9.1e-06 55.1 71 46.5
VMungo0251G2437 Vigna mungo HOM05D002458 ORTHO05D002603 9.1e-06 55.1 71 46.5


User provided reference genes

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