Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0008904 Sechium edule HOM05D001966 ORTHO05D007227 7.7e-67 256.9 122 100.0
BcaNung07085 Brassica carinata HOM05D001966 ORTHO05D010449 7.6e-30 134.0 93 74.2
Peaxi162Scf00080g00518 Petunia axillaris HOM05D001966 ORTHO05D007227 1.4e-28 129.8 118 59.3
Sc25g0002010 Simmondsia chinensis HOM05D001966 ORTHO05D007227 3.4e-22 108.6 146 45.2
FAN01G2668 Fragaria x ananassa HOM05D001966 ORTHO05D007227 1.6e-19 99.8 138 47.1
AL9U11930 Arabidopsis lyrata HOM05D001966 ORTHO05D007227 2.7e-19 99.0 184 37.5
VMungo0720G2248 Vigna mungo HOM05D001966 ORTHO05D007227 8.7e-18 94.0 82 61.0
VMungo1127G1224 Vigna mungo HOM05D001966 ORTHO05D007227 1.1e-17 93.6 82 61.0
arahy.Tifrunner.gnm1.ann1.DY3820 Arachis hypogaea HOM05D000445 ORTHO05D010986 1.9e-17 92.8 61 73.8
VMungo0464G1535 Vigna mungo HOM05D001966 ORTHO05D007227 3.3e-17 92.0 80 61.2
arahy.Tifrunner.gnm1.ann1.WI2XKB Arachis hypogaea HOM05D001966 ORTHO05D007227 5.6e-17 91.3 51 82.4
arahy.Tifrunner.gnm1.ann1.ZMH4QB Arachis hypogaea HOM05D001966 ORTHO05D010986 5.6e-17 91.3 51 82.4
Lsat_1_v5_gn_3_13340 Lactuca sativa HOM05D001966 ORTHO05D007227 5.6e-17 91.3 80 60.0
EL10As10g23965 Beta vulgaris HOM05D001966 ORTHO05D007227 2.8e-16 89.0 58 75.9
arahy.Tifrunner.gnm1.ann1.8D90VP Arachis hypogaea HOM05D001966 ORTHO05D007227 4.8e-16 88.2 61 70.5
arahy.Tifrunner.gnm1.ann1.MCF6CI Arachis hypogaea HOM05D001966 ORTHO05D010986 1.1e-15 87.0 50 80.0
arahy.Tifrunner.gnm1.ann1.LY649L Arachis hypogaea HOM05D001966 ORTHO05D010986 1.4e-15 86.7 51 82.4
ClCG02G009760 Citrullus lanatus HOM05D001966 ORTHO05D000002 1.8e-15 86.3 251 30.3
arahy.Tifrunner.gnm1.ann1.92D98S Arachis hypogaea HOM05D000533 ORTHO05D006151 1.2e-14 83.6 42 90.5
arahy.Tifrunner.gnm1.ann1.FN06MZ Arachis hypogaea HOM05D000533 ORTHO05D006151 1.2e-14 83.6 42 90.5
arahy.Tifrunner.gnm1.ann1.JR5HFJ Arachis hypogaea HOM05D000533 ORTHO05D006151 1.2e-14 83.6 42 90.5
Lsat_1_v5_gn_2_20521 Lactuca sativa HOM05D001966 ORTHO05D007227 9.9e-14 80.5 233 29.6
Lsat_1_v5_gn_3_110440 Lactuca sativa HOM05D001966 ORTHO05D007227 9.9e-14 80.5 233 29.6
Lsat_1_v5_gn_5_181880 Lactuca sativa HOM05D001966 ORTHO05D007227 9.9e-14 80.5 233 29.6
Lsat_1_v5_gn_9_39281 Lactuca sativa HOM05D001966 ORTHO05D007227 9.9e-14 80.5 233 29.6
Glyma.05G084525 Glycine max HOM05D001966 ORTHO05D007227 1.7e-13 79.7 80 56.2
Lsat_1_v5_gn_6_94301 Lactuca sativa HOM05D001966 ORTHO05D007227 3.8e-13 78.6 232 29.3
VMungo1233G0001 Vigna mungo HOM05D001966 ORTHO05D010986 1.1e-12 77.0 52 75.0
BcaB02g11353 Brassica carinata HOM05D007952 ORTHO05D009823 1.4e-12 76.6 36 97.2
BolSC29t60538H Brassica oleracea HOM05D008016 ORTHO05D010986 1.4e-12 76.6 36 97.2
BolSC49t61132H Brassica oleracea HOM05D001966 ORTHO05D010986 1.4e-12 76.6 36 97.2
CARHR282380 Cardamine hirsuta HOM05D001966 ORTHO05D010986 1.4e-12 76.6 36 97.2
CARHR282500 Cardamine hirsuta HOM05D001966 ORTHO05D010986 1.4e-12 76.6 36 97.2
Cpa.g.sc23.86 Carica papaya HOM05D001966 ORTHO05D010986 1.4e-12 76.6 36 97.2
Cfa023005 Carpinus fangiana HOM05D001966 ORTHO05D010986 1.4e-12 76.6 36 97.2
CsaV3_UNG196500 Cucumis sativus L. HOM05D001966 ORTHO05D010986 1.4e-12 76.6 36 97.2
Hma1.2p1_0594F.1_g185800 Hydrangea macrophylla HOM05D001966 ORTHO05D010986 1.4e-12 76.6 36 97.2
Sed0001789 Sechium edule HOM05D001966 ORTHO05D010986 1.4e-12 76.6 36 97.2
Sed0007694 Sechium edule HOM05D001966 ORTHO05D010986 1.4e-12 76.6 36 97.2
Sed0023467 Sechium edule HOM05D001966 ORTHO05D010986 1.4e-12 76.6 36 97.2
Sed0025793 Sechium edule HOM05D001966 ORTHO05D010986 1.4e-12 76.6 36 97.2
VMungo1383G3700 Vigna mungo HOM05D000680 ORTHO05D000738 1.4e-12 76.6 44 81.8
arahy.Tifrunner.gnm1.ann1.Q8ISGW Arachis hypogaea HOM05D001966 ORTHO05D007227 4.2e-12 75.1 80 53.8
ClCG11G009300 Citrullus lanatus HOM05D001966 ORTHO05D007227 4.2e-12 75.1 49 71.4
COL.COLO4_03213 Corchorus olitorius HOM05D001966 ORTHO05D010986 4.2e-12 75.1 36 94.4
SHI36395 Sapria himalayana HOM05D001966 ORTHO05D010986 4.2e-12 75.1 63 63.5
BolSC29t60498H Brassica oleracea HOM05D001966 ORTHO05D007227 5.4e-12 74.7 50 70.0
BolSC35t60683H Brassica oleracea HOM05D001966 ORTHO05D007227 5.4e-12 74.7 50 70.0
BolSC44t60831H Brassica oleracea HOM05D001966 ORTHO05D007227 5.4e-12 74.7 50 70.0
Sed0001460 Sechium edule HOM05D001966 ORTHO05D007227 5.4e-12 74.7 65 61.5
Sed0012652 Sechium edule HOM05D001966 ORTHO05D007227 7.1e-12 74.3 49 71.4
Sed0014217 Sechium edule HOM05D001966 ORTHO05D007227 7.1e-12 74.3 49 71.4
Aqoxy38s012 Aquilegia oxysepala HOM05D001966 ORTHO05D010986 9.3e-12 73.9 36 94.4
Aqoxy4G02030 Aquilegia oxysepala HOM05D001966 ORTHO05D010986 9.3e-12 73.9 36 94.4
FAN26G1474 Fragaria x ananassa HOM05D001966 ORTHO05D010986 1.2e-11 73.6 36 94.4
Cfa023004 Carpinus fangiana HOM05D001966 ORTHO05D007227 1.6e-11 73.2 49 69.4
Phvul.003G067400 Phaseolus vulgaris HOM05D001966 ORTHO05D007227 1.6e-11 73.2 49 71.4
RhsimPtG0005300 Rhododendron simsii HOM05D001966 ORTHO05D007227 1.6e-11 73.2 49 69.4
C09p24670 Brassica napus HOM05D001966 ORTHO05D007227 2.1e-11 72.8 49 69.4
C09p39340 Brassica napus HOM05D001966 ORTHO05D007227 2.1e-11 72.8 49 69.4
BolSC29t60539H Brassica oleracea HOM05D001966 ORTHO05D007227 2.1e-11 72.8 49 69.4
BolSC29t60556H Brassica oleracea HOM05D001966 ORTHO05D007227 2.1e-11 72.8 49 69.4
BolSC35t60713H Brassica oleracea HOM05D001966 ORTHO05D007227 2.1e-11 72.8 49 69.4
BolSC44t60814H Brassica oleracea HOM05D001966 ORTHO05D007227 2.1e-11 72.8 49 69.4
BolSC45t60900H Brassica oleracea HOM05D001966 ORTHO05D007227 2.1e-11 72.8 49 69.4
BolSC45t60918H Brassica oleracea HOM05D001966 ORTHO05D007227 2.1e-11 72.8 49 69.4
BolSC46t60967H Brassica oleracea HOM05D001966 ORTHO05D007227 2.1e-11 72.8 49 69.4
BolSC49t61133H Brassica oleracea HOM05D001966 ORTHO05D007227 2.1e-11 72.8 49 69.4
BraSC103t45419Z Brassica rapa HOM05D001966 ORTHO05D007227 2.1e-11 72.8 49 69.4
BraSC25t45921Z Brassica rapa HOM05D001966 ORTHO05D007227 2.1e-11 72.8 49 69.4
BraSC59t46509Z Brassica rapa HOM05D001966 ORTHO05D007227 2.1e-11 72.8 49 69.4
BraSC59t46540Z Brassica rapa HOM05D001966 ORTHO05D007227 2.1e-11 72.8 49 69.4
Potri.011G074201 Populus trichocarpa HOM05D001966 ORTHO05D007227 2.1e-11 72.8 49 67.3
Lsat_1_v5_gn_4_147680 Lactuca sativa HOM05D001966 ORTHO05D007227 3.5e-11 72.0 40 82.5
Lsat_1_v5_gn_4_147860 Lactuca sativa HOM05D001966 ORTHO05D007227 3.5e-11 72.0 40 82.5
arahy.Tifrunner.gnm1.ann1.KZKE62 Arachis hypogaea HOM05D001966 ORTHO05D007227 4.6e-11 71.6 73 50.7
BcaC04g20781 Brassica carinata HOM05D001966 ORTHO05D010449 4.6e-11 71.6 40 82.5
Sc05g0004050 Simmondsia chinensis HOM05D001966 ORTHO05D007227 6.0e-11 71.2 46 71.7
arahy.Tifrunner.gnm1.ann1.6ZZ12G Arachis hypogaea HOM05D001966 ORTHO05D007227 7.9e-11 70.9 49 67.3
arahy.Tifrunner.gnm1.ann1.77ZW6W Arachis hypogaea HOM05D001966 ORTHO05D007227 7.9e-11 70.9 49 67.3
arahy.Tifrunner.gnm1.ann1.EGZ6K4 Arachis hypogaea HOM05D001966 ORTHO05D007227 7.9e-11 70.9 49 67.3
arahy.Tifrunner.gnm1.ann1.F2PHFK Arachis hypogaea HOM05D000890 ORTHO05D000697 7.9e-11 70.9 49 67.3
arahy.Tifrunner.gnm1.ann1.ZHN7AL Arachis hypogaea HOM05D001966 ORTHO05D007227 7.9e-11 70.9 49 67.3
Hma1.2p1_0544F.1_g175783 Hydrangea macrophylla HOM05D001966 ORTHO05D007227 7.9e-11 70.9 49 67.3
Sc05g0004140 Simmondsia chinensis HOM05D001966 ORTHO05D011119 1.3e-10 70.1 36 88.9
HanXRQChr05g0134861 Helianthus annuus HOM05D001966 ORTHO05D007227 2.3e-10 69.3 40 80.0
arahy.Tifrunner.gnm1.ann1.JURL6Q Arachis hypogaea HOM05D001966 ORTHO05D007227 3.0e-10 68.9 49 65.3
CDE02G0843 Ceratophyllum demersum HOM05D001966 ORTHO05D007227 3.0e-10 68.9 49 65.3
Aqoxy2G01968 Aquilegia oxysepala HOM05D001966 ORTHO05D007227 5.1e-10 68.2 49 63.3
SHI27036 Sapria himalayana HOM05D001966 ORTHO05D010986 5.1e-10 68.2 38 81.6
arahy.Tifrunner.gnm1.ann1.X4EL03 Arachis hypogaea HOM05D001966 ORTHO05D010986 6.7e-10 67.8 40 80.0
HPP92_028385 Vanilla planifolia HOM05D001966 ORTHO05D007227 6.7e-10 67.8 49 63.3
HPP92_028396 Vanilla planifolia HOM05D001966 ORTHO05D007227 6.7e-10 67.8 49 63.3
HPP92_028404 Vanilla planifolia HOM05D001966 ORTHO05D007227 6.7e-10 67.8 49 63.3
HPP92_028413 Vanilla planifolia HOM05D001966 ORTHO05D007227 6.7e-10 67.8 49 63.3
HPP92_028421 Vanilla planifolia HOM05D001966 ORTHO05D007227 6.7e-10 67.8 49 63.3
HPP92_028428 Vanilla planifolia HOM05D001966 ORTHO05D007227 6.7e-10 67.8 49 63.3
HPP92_028434 Vanilla planifolia HOM05D001966 ORTHO05D007227 6.7e-10 67.8 49 63.3
LjContig00319g0014927 Lotus japonicus HOM05D001966 ORTHO05D007227 8.7e-10 67.4 60 55.0
EL10As6g23662 Beta vulgaris HOM05D001325 ORTHO05D001540 1.1e-09 67.0 40 75.0
Peaxi162Scf01600g00007 Petunia axillaris HOM05D001966 ORTHO05D010986 1.1e-09 67.0 47 68.1
Gorai.006G045900 Gossypium raimondii HOM05D001966 ORTHO05D007227 1.9e-09 66.2 63 55.6
Glyma.08G276350 Glycine max HOM05D001966 ORTHO05D007227 2.5e-09 65.9 66 53.0
ClCG09G021430 Citrullus lanatus HOM05D001966 ORTHO05D010986 4.3e-09 65.1 32 93.8
Medtr0002s0250 Medicago truncatula HOM05D001966 ORTHO05D007227 4.3e-09 65.1 49 63.3
Medtr3g035620 Medicago truncatula HOM05D001966 ORTHO05D007227 4.3e-09 65.1 49 63.3
arahy.Tifrunner.gnm1.ann1.3I0RGA Arachis hypogaea HOM05D001966 ORTHO05D007227 2.1e-08 62.8 49 59.2
FvH4_c3g00070 Fragaria vesca HOM05D001966 ORTHO05D007227 2.1e-08 62.8 50 62.0
Sopen10g016570 Solanum pennellii HOM05D008037 ORTHO05D004271 3.7e-08 62.0 41 73.2
Nitab4.5_0001761g0140 Nicotiana tabacum HOM05D001966 ORTHO05D010986 4.8e-08 61.6 41 73.2
arahy.Tifrunner.gnm1.ann1.I9YN8I Arachis hypogaea HOM05D001966 ORTHO05D007227 1.4e-07 60.1 48 54.2
Nitab4.5_0001986g0110 Nicotiana tabacum HOM05D001966 ORTHO05D010986 1.4e-07 60.1 41 73.2
Nitab4.5_0006502g0080 Nicotiana tabacum HOM05D001966 ORTHO05D010986 1.4e-07 60.1 31 87.1
Nitab4.5_0009355g0010 Nicotiana tabacum HOM05D001966 ORTHO05D010986 1.4e-07 60.1 29 93.1
Nitab4.5_0012234g0090 Nicotiana tabacum HOM05D001966 ORTHO05D010986 1.4e-07 60.1 41 73.2
Peaxi162Scf00994g00002 Petunia axillaris HOM05D001966 ORTHO05D010986 1.4e-07 60.1 29 93.1
Glyma.09G133875 Glycine max HOM05D001966 ORTHO05D007227 1.8e-07 59.7 49 61.2
Gohir.1Z049882 Gossypium hirsutum HOM05D001966 ORTHO05D007227 1.8e-07 59.7 32 81.2
Gohir.A04G039270 Gossypium hirsutum HOM05D001966 ORTHO05D007227 1.8e-07 59.7 32 81.2
Gohir.A05G323724 Gossypium hirsutum HOM05D001966 ORTHO05D007227 1.8e-07 59.7 32 81.2
SHI26755 Sapria himalayana HOM05D001966 ORTHO05D010986 3.1e-07 58.9 36 72.2
EL10Ac8g19705 Beta vulgaris HOM05D001966 ORTHO05D007227 4.0e-07 58.5 46 60.9
DCAR_001522 Daucus carota HOM05D001966 ORTHO05D007227 5.3e-07 58.2 40 67.5
SHI36539 Sapria himalayana HOM05D001966 ORTHO05D007227 6.9e-07 57.8 36 72.2
ECA247G0757 Erigeron canadensis HOM05D000006 ORTHO05D000001 9.0e-07 57.4 55 52.7
Nitab4.5_0001170g0070 Nicotiana tabacum HOM05D008037 ORTHO05D004271 9.0e-07 57.4 64 51.6
Nitab4.5_0004137g0080 Nicotiana tabacum HOM05D001966 ORTHO05D010986 9.0e-07 57.4 44 68.2
SHI36394 Sapria himalayana HOM05D001966 ORTHO05D007227 1.5e-06 56.6 32 75.0
Gohir.A09G039165 Gossypium hirsutum HOM05D001966 ORTHO05D007227 4.5e-06 55.1 52 59.6
Nitab4.5_0007400g0150 Nicotiana tabacum HOM05D001966 ORTHO05D010986 5.8e-06 54.7 31 77.4


User provided reference genes

Program Settings