Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0008859 Sechium edule HOM05D004174 ORTHO05D004624 1.0e-257 892.9 439 100.0
MELO3C026643.2 Cucumis melo HOM05D004174 ORTHO05D004624 4.9e-204 714.5 468 79.5
ClCG06G010920 Citrullus lanatus HOM05D004174 ORTHO05D004624 1.2e-173 613.6 474 69.6
Gohir.A13G199200 Gossypium hirsutum HOM05D004174 ORTHO05D004624 1.5e-149 533.5 410 65.4
COL.COLO4_05761 Corchorus olitorius HOM05D004174 ORTHO05D004624 5.0e-148 528.5 388 66.2
MD00G1107300 Malus domestica HOM05D004174 ORTHO05D004624 1.1e-147 527.3 385 66.8
Gohir.D13G204700 Gossypium hirsutum HOM05D004174 ORTHO05D004624 4.2e-147 525.4 409 65.0
Gorai.013G233600 Gossypium raimondii HOM05D004174 ORTHO05D004624 7.2e-147 524.6 394 66.8
RcHm_v2.0_Chr2g0089131 Rosa chinensis HOM05D004174 ORTHO05D004624 1.2e-146 523.9 423 63.4
FAN28G1355 Fragaria x ananassa HOM05D004174 ORTHO05D004624 1.6e-146 523.5 423 62.4
FAN23G0992 Fragaria x ananassa HOM05D004174 ORTHO05D004624 2.1e-146 523.1 400 64.8
FAN19G0954 Fragaria x ananassa HOM05D004174 ORTHO05D004624 7.9e-146 521.2 424 62.7
FvH4_1g03600 Fragaria vesca HOM05D004174 ORTHO05D004624 1.8e-145 520.0 424 62.5
Cfa003346 Carpinus fangiana HOM05D004174 ORTHO05D004624 3.0e-145 519.2 385 66.5
Haze_25614 Corylus avellana HOM05D004174 ORTHO05D004624 3.0e-145 519.2 385 66.5
Sed0019119 Sechium edule HOM05D004174 ORTHO05D004624 3.0e-145 519.2 409 62.8
Thecc.09G123000 Theobroma cacao HOM05D004174 ORTHO05D004624 4.3e-144 515.4 390 65.9
CiPaw.03G241700 Carya illinoinensis HOM05D004174 ORTHO05D004624 1.3e-143 513.8 431 60.8
Dinv36548 Davidia involucrata HOM05D004174 ORTHO05D004624 2.2e-143 513.1 380 67.1
Hma1.2p1_0665F.1_g199150 Hydrangea macrophylla HOM05D004174 ORTHO05D004624 3.7e-143 512.3 393 65.1
TWI34G0924 Tripterygium wilfordii HOM05D004174 ORTHO05D004624 6.3e-143 511.5 386 65.5
ClCG11G002850 Citrullus lanatus HOM05D004174 ORTHO05D004624 1.1e-142 510.8 411 62.8
CsaV3_2G002690 Cucumis sativus L. HOM05D004174 ORTHO05D004624 1.8e-142 510.0 409 63.3
Prupe.7G239600 Prunus persica HOM05D004174 ORTHO05D004624 1.8e-142 510.0 383 65.0
SGA_v2.0_scaffold229G43324 Striga asiatica HOM05D004174 ORTHO05D004624 1.8e-142 510.0 384 64.8
Manes.06G050000 Manihot esculenta HOM05D004174 ORTHO05D004624 2.4e-142 509.6 390 65.4
QL02p087765 Quercus lobata HOM05D004174 ORTHO05D004624 5.3e-142 508.4 384 65.4
Cc06_g08790 Coffea canephora HOM05D004174 ORTHO05D004624 6.9e-142 508.1 387 64.6
MELO3C004525.2 Cucumis melo HOM05D004174 ORTHO05D004624 6.9e-142 508.1 411 63.5
MD02G1035600 Malus domestica HOM05D004174 ORTHO05D004624 6.9e-142 508.1 392 64.8
Atru.chr7.1197 Acer truncatum HOM05D004174 ORTHO05D004624 9.1e-142 507.7 414 63.0
Oeu058056.1 Olea europaea HOM05D004174 ORTHO05D004624 9.1e-142 507.7 391 63.9
Ciclev10008313m.g Citrus clementina HOM05D004174 ORTHO05D004624 1.2e-141 507.3 422 62.1
Nn8g39387 Nelumbo nucifera HOM05D004174 ORTHO05D004624 1.5e-141 506.9 389 64.8
CANSAT11G0280 Cannabis sativa HOM05D004174 ORTHO05D004624 2.6e-141 506.1 401 63.3
FAN26G3217 Fragaria x ananassa HOM05D004174 ORTHO05D004624 2.6e-141 506.1 423 61.5
vmacro06177 Vaccinium macrocarpon HOM05D004174 ORTHO05D004624 1.0e-140 504.2 422 61.1
Aqoxy7G02096 Aquilegia oxysepala HOM05D004174 ORTHO05D004624 2.9e-140 502.7 384 64.6
Duzib187G0531 Durio zibethinus HOM05D004174 ORTHO05D004624 2.9e-140 502.7 409 63.3
Hund09144 Selenicereus undatus HOM05D004174 ORTHO05D004624 5.0e-140 501.9 380 64.7
Eucgr.C04181 Eucalyptus grandis HOM05D004174 ORTHO05D004624 2.5e-139 499.6 390 64.4
Actinidia26403 Actinidia chinensis HOM05D004174 ORTHO05D004624 3.2e-139 499.2 433 58.0
Actinidia07434 Actinidia chinensis HOM05D004174 ORTHO05D004624 4.2e-139 498.8 385 62.6
TWI32G1270 Tripterygium wilfordii HOM05D004174 ORTHO05D004624 9.4e-139 497.7 386 64.0
MSTRG.19607 Avicennia marina HOM05D004174 ORTHO05D004624 1.2e-138 497.3 402 60.4
Manes.14G130500 Manihot esculenta HOM05D004174 ORTHO05D004624 1.2e-138 497.3 390 63.3
Potri.006G154200 Populus trichocarpa HOM05D004174 ORTHO05D004624 1.6e-138 496.9 386 63.5
TAR383G0558 Trochodendron aralioides HOM05D004174 ORTHO05D004624 2.1e-138 496.5 391 63.9
CARHR192760 Cardamine hirsuta HOM05D004174 ORTHO05D004624 2.7e-138 496.1 389 62.0
Medtr2g054680 Medicago truncatula HOM05D004174 ORTHO05D004624 2.7e-138 496.1 389 64.3
Duzib150G0384 Durio zibethinus HOM05D004174 ORTHO05D004624 3.6e-138 495.7 386 64.2
Carub.0006s1845 Capsella rubella HOM05D004174 ORTHO05D004624 1.0e-137 494.2 403 61.8
Ca_03159_v3 Cicer arietinum L. HOM05D004174 ORTHO05D004624 1.0e-137 494.2 390 63.3
A02p06020 Brassica napus HOM05D004174 ORTHO05D004624 6.7e-137 491.5 391 62.9
BraA02t05553Z Brassica rapa HOM05D004174 ORTHO05D004624 6.7e-137 491.5 391 62.9
COL.COLO4_17917 Corchorus olitorius HOM05D004174 ORTHO05D004624 8.8e-137 491.1 393 63.6
Thhalv10013566m.g Eutrema salsugineum HOM05D004174 ORTHO05D004624 2.0e-136 490.0 404 60.9
Lalb_Chr23g0275331 Lupinus albus HOM05D004174 ORTHO05D004624 2.0e-136 490.0 403 60.8
Psat1g025760 Pisum sativum HOM05D004174 ORTHO05D004624 2.0e-136 490.0 389 64.0
AT5G20070 Arabidopsis thaliana HOM05D004174 ORTHO05D004624 2.6e-136 489.6 401 61.8
BcaC03g13730 Brassica carinata HOM05D004174 ORTHO05D004624 2.6e-136 489.6 391 62.7
Migut.J01169 Erythranthe guttata HOM05D004174 ORTHO05D004624 2.6e-136 489.6 407 61.4
EL10Ac8g18616 Beta vulgaris HOM05D004174 ORTHO05D004624 3.3e-136 489.2 392 62.5
Potri.018G070400 Populus trichocarpa HOM05D004174 ORTHO05D004624 3.3e-136 489.2 384 62.5
Sp6g24340 Schrenkiella parvula HOM05D004174 ORTHO05D004624 4.4e-136 488.8 408 60.3
AL6G31620 Arabidopsis lyrata HOM05D004174 ORTHO05D004624 5.7e-136 488.4 404 61.6
Aa31LG8G2170 Aethionema arabicum HOM05D004174 ORTHO05D004624 1.3e-135 487.3 394 61.7
Peaxi162Scf02490g00007 Petunia axillaris HOM05D004174 ORTHO05D004624 1.3e-135 487.3 400 61.8
THA.LOC104811038 Tarenaya hassleriana HOM05D004174 ORTHO05D004624 1.7e-135 486.9 397 61.0
MBI04_g24208_MAGBIO Magnolia biondii HOM05D004174 ORTHO05D004624 2.8e-135 486.1 396 62.4
BcaB01g04811 Brassica carinata HOM05D004174 ORTHO05D004624 4.8e-135 485.3 405 60.5
PGR102G0881 Punica granatum HOM05D004174 ORTHO05D004624 8.2e-135 484.6 388 62.9
Sc18g0000710 Simmondsia chinensis HOM05D004174 ORTHO05D004624 1.8e-134 483.4 391 62.7
TPR.G31095 Trifolium pratense HOM05D004174 ORTHO05D004624 1.8e-134 483.4 425 60.2
BcaB05g22875 Brassica carinata HOM05D004174 ORTHO05D004624 2.4e-134 483.0 393 62.1
Lsat_1_v5_gn_8_58900 Lactuca sativa HOM05D004174 ORTHO05D004624 2.4e-134 483.0 395 61.5
Sabra18G0061500 Salix brachista HOM05D004174 ORTHO05D004624 2.4e-134 483.0 384 62.0
THA.LOC104799651 Tarenaya hassleriana HOM05D004174 ORTHO05D004624 3.1e-134 482.6 395 60.5
SalBow3G2402 Salvia bowleyana HOM05D004174 ORTHO05D004624 4.1e-134 482.3 399 62.4
BNapus_Darmor_BZH_scaffold_38p01820 Brassica napus HOM05D004174 ORTHO05D004624 2.6e-133 479.6 391 62.1
BolC3t13612H Brassica oleracea HOM05D004174 ORTHO05D004624 4.5e-133 478.8 406 59.9
PGSC0003DMG400024321 Solanum tuberosum HOM05D004174 ORTHO05D004624 7.7e-133 478.0 388 62.4
HanXRQChr12g0368841 Helianthus annuus HOM05D004174 ORTHO05D004624 1.7e-132 476.9 419 58.9
C03p11380 Brassica napus HOM05D004174 ORTHO05D004624 2.2e-132 476.5 406 59.6
CSS0035220 Camellia sinensis var. sinensis HOM05D004174 ORTHO05D004624 2.2e-132 476.5 364 65.4
VMungo1309G2067 Vigna mungo HOM05D004174 ORTHO05D004624 2.2e-132 476.5 405 59.5
Phvul.009G197200 Phaseolus vulgaris HOM05D004174 ORTHO05D004624 3.8e-132 475.7 407 59.7
Sopen06g031500 Solanum pennellii HOM05D004174 ORTHO05D004624 2.5e-131 473.0 388 61.6
DCAR_017828 Daucus carota HOM05D004174 ORTHO05D004624 4.2e-131 472.2 383 61.6
Gohir.D08G260000 Gossypium hirsutum HOM05D004174 ORTHO05D004624 1.2e-130 470.7 388 61.9
A03p09800 Brassica napus HOM05D004174 ORTHO05D004624 1.6e-130 470.3 398 60.8
BraA03t10295Z Brassica rapa HOM05D004174 ORTHO05D004624 1.6e-130 470.3 398 60.8
Gorai.004G277900 Gossypium raimondii HOM05D004174 ORTHO05D004624 2.1e-130 469.9 395 61.5
Solyc06g075080.4 Solanum lycopersicum HOM05D004174 ORTHO05D004624 3.6e-130 469.2 388 61.3
HanXRQChr06g0180241 Helianthus annuus HOM05D004174 ORTHO05D004624 4.7e-130 468.8 393 61.3
PSO170G6838 Papaver somniferum HOM05D004174 ORTHO05D004624 1.0e-129 467.6 389 62.0
MD15G1175700 Malus domestica HOM05D004174 ORTHO05D004624 1.8e-129 466.8 437 56.5
CAN.G1966.1 Capsicum annuum HOM05D004174 ORTHO05D004624 3.0e-129 466.1 418 59.1
PSO455G0049 Papaver somniferum HOM05D004174 ORTHO05D004624 6.7e-129 464.9 403 60.0
Lalb_Chr08g0234871 Lupinus albus HOM05D004174 ORTHO05D004624 2.6e-128 463.0 386 60.9
Nitab4.5_0006698g0010 Nicotiana tabacum HOM05D004174 ORTHO05D004624 2.6e-128 463.0 399 60.7
Lj1g0010752 Lotus japonicus HOM05D004174 ORTHO05D004624 5.7e-128 461.8 409 59.4
HanXRQChr03g0062501 Helianthus annuus HOM05D004174 ORTHO05D004624 9.7e-128 461.1 395 59.7
arahy.Tifrunner.gnm1.ann1.SBVG8E Arachis hypogaea HOM05D004174 ORTHO05D004624 1.7e-127 460.3 414 57.2
Nitab4.5_0000106g0230 Nicotiana tabacum HOM05D004174 ORTHO05D004624 2.8e-127 459.5 394 60.9
Lsat_1_v5_gn_7_42401 Lactuca sativa HOM05D004174 ORTHO05D004624 8.2e-127 458.0 389 58.6
Rhsim03G0246500 Rhododendron simsii HOM05D004174 ORTHO05D004624 1.8e-126 456.8 340 65.9
Glyma.17G116600 Glycine max HOM05D004174 ORTHO05D004624 2.4e-126 456.4 430 57.7
Glyma.06G216700 Glycine max HOM05D004174 ORTHO05D004624 4.1e-126 455.7 421 58.0
DCAR_009201 Daucus carota HOM05D004174 ORTHO05D004624 1.6e-125 453.8 384 58.6
arahy.Tifrunner.gnm1.ann1.E6UBTJ Arachis hypogaea HOM05D004174 ORTHO05D004624 2.6e-125 453.0 426 55.9
ATR1156G006 Amborella trichopoda HOM05D004174 ORTHO05D004624 3.5e-125 452.6 391 58.6
Lalb_Chr07g0178801 Lupinus albus HOM05D004174 ORTHO05D004624 2.2e-124 449.9 385 59.5
VMungo1215G2625 Vigna mungo HOM05D004174 ORTHO05D004624 2.7e-122 443.0 391 59.6
Psat4g040360 Pisum sativum HOM05D004174 ORTHO05D004624 6.1e-122 441.8 386 58.0
TPR.G10694 Trifolium pratense HOM05D004174 ORTHO05D004624 2.3e-121 439.9 408 55.6
GSVIVG01015501001 Vitis vinifera HOM05D004174 ORTHO05D004624 1.5e-120 437.2 290 71.4
Phvul.003G162700 Phaseolus vulgaris HOM05D004174 ORTHO05D004624 3.4e-120 436.0 391 58.8
Medtr4g113990 Medicago truncatula HOM05D004174 ORTHO05D004624 1.3e-119 434.1 388 57.7
HPP92_000685 Vanilla planifolia HOM05D004174 ORTHO05D004624 1.3e-119 434.1 380 58.7
CDE02G3646 Ceratophyllum demersum HOM05D004174 ORTHO05D004624 1.1e-118 431.0 381 57.5
HPP92_000661 Vanilla planifolia HOM05D004174 ORTHO05D004624 1.4e-118 430.6 380 58.4
Dinv41532 Davidia involucrata HOM05D004174 ORTHO05D004624 1.7e-116 423.7 323 65.0
ECA240G3275 Erigeron canadensis HOM05D004174 ORTHO05D004624 8.5e-116 421.4 332 61.7
AUR62033476 Chenopodium quinoa HOM05D004174 ORTHO05D004624 4.7e-114 415.6 427 52.7
Zm00001eb377430 Zea mays HOM05D004174 ORTHO05D004624 1.4e-113 414.1 389 56.8
Os06g0141166 Oryza sativa ssp. japonica HOM05D004174 ORTHO05D004624 2.8e-111 406.4 396 55.8
SEGI_17043 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 4.5e-109 399.1 380 55.8
FAN26G0665 Fragaria x ananassa HOM05D004174 ORTHO05D004624 1.0e-105 387.9 243 74.5
Ah.02g124290 Amaranthus hybridus HOM05D004174 ORTHO05D004624 6.0e-93 345.5 225 71.1
Ah.14g080300 Amaranthus hybridus HOM05D004174 ORTHO05D004624 6.0e-93 345.5 222 72.1
Gohir.A08G239300 Gossypium hirsutum HOM05D004174 ORTHO05D004624 1.1e-89 334.7 280 61.4
AagrBONN_evm.TU.Sc2ySwM_368.699 Anthoceros agrestis HOM05D004174 ORTHO05D004624 1.5e-88 330.9 464 42.5
Lj7A632G45 Lonicera japonica HOM05D004174 ORTHO05D004624 2.0e-88 330.5 275 61.1
Pp3c3_2090 Physcomitrium patens HOM05D004174 ORTHO05D004624 1.9e-86 323.9 395 46.1
Mapoly0103s0044 Marchantia polymorpha HOM05D004174 ORTHO05D004624 1.6e-85 320.9 251 61.0
Lj4g0002160 Lotus japonicus HOM05D004174 ORTHO05D004624 6.0e-85 318.9 279 57.7
SMO169G0291 Selaginella moellendorffii HOM05D004174 ORTHO05D004624 3.9e-84 316.2 255 59.2
SEGI_09002 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 1.1e-78 298.1 273 51.6
Lj4A460T58 Lonicera japonica HOM05D004174 ORTHO05D004624 6.2e-74 282.3 238 60.9
AUR62030487 Chenopodium quinoa HOM05D004174 ORTHO05D004624 3.6e-66 256.5 173 71.7
AUR62011109 Chenopodium quinoa HOM05D004174 ORTHO05D004624 4.2e-62 243.0 187 66.3
Glyma.05G008302 Glycine max HOM05D004174 ORTHO05D004624 2.1e-53 214.2 157 65.6
SEGI_03330 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 1.8e-52 211.1 291 41.9
BolC2t07007H Brassica oleracea HOM05D004174 ORTHO05D004624 9.3e-46 188.7 204 50.5
Cpa.g.sc648.3 Carica papaya HOM05D004174 ORTHO05D004624 5.8e-40 169.5 164 53.7
AUR62015314 Chenopodium quinoa HOM05D004174 ORTHO05D004624 1.4e-38 164.9 145 57.9
Cre09.g396900 Chlamydomonas reinhardtii HOM05D004174 ORTHO05D004624 1.0e-36 158.7 230 37.8
AUR62011090 Chenopodium quinoa HOM05D003948 ORTHO05D004610 1.8e-33 147.9 174 48.3
Haze_27339 Corylus avellana HOM05D004174 ORTHO05D004624 1.8e-33 147.9 181 47.5
Cc11_g15180 Coffea canephora HOM05D004174 ORTHO05D004624 8.5e-31 139.0 97 68.0
MD02G1035400 Malus domestica HOM05D004174 ORTHO05D004624 1.4e-30 138.3 81 72.8
Cfa023976 Carpinus fangiana HOM05D003934 ORTHO05D005108 2.7e-29 134.0 256 35.2
Ah.14g080310 Amaranthus hybridus HOM05D004174 ORTHO05D004624 2.3e-28 131.0 193 43.0
Pp3c14_12120 Physcomitrium patens HOM05D004174 ORTHO05D004624 8.8e-28 129.0 337 31.2
SEGI_13131 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 2.0e-27 127.9 297 32.0
MCO10G159 Micromonas commoda HOM05D004174 ORTHO05D004624 1.5e-24 118.2 333 28.2
Mapoly0019s0154 Marchantia polymorpha HOM05D004174 ORTHO05D004624 6.5e-23 112.8 262 31.3
CBR_g46446 Chara braunii HOM05D004174 ORTHO05D004624 1.4e-22 111.7 147 44.9
Sabra06G0122300 Salix brachista HOM05D004174 ORTHO05D004624 1.6e-21 108.2 255 33.3
Ah.05g171270 Amaranthus hybridus HOM05D004174 ORTHO05D004624 3.9e-20 103.6 64 70.3
Ah.12g053390 Amaranthus hybridus HOM05D004174 ORTHO05D004624 3.9e-20 103.6 64 70.3
Ah.12g055680 Amaranthus hybridus HOM05D004174 ORTHO05D004624 3.9e-20 103.6 64 70.3
PRCOL_00006603 Prasinoderma coloniale HOM05D004174 ORTHO05D004624 6.7e-20 102.8 179 33.0
Lj4C460T3 Lonicera japonica HOM05D004174 ORTHO05D004624 1.5e-19 101.7 76 63.2
Cre13.g582476 Chlamydomonas reinhardtii HOM05D004174 ORTHO05D004624 3.6e-13 80.5 94 46.8
VMungo0647G2130 Vigna mungo HOM05D004174 ORTHO05D004624 1.4e-12 78.6 73 53.4
Psat3g000160 Pisum sativum HOM05D004174 ORTHO05D004624 3.0e-12 77.4 96 44.8
SMO141G0190 Selaginella moellendorffii HOM05D004174 ORTHO05D004624 1.3e-10 72.0 119 38.7
Ah.12g053410 Amaranthus hybridus HOM05D004174 ORTHO05D004624 9.1e-09 65.9 38 76.3
VMungo1215G0447 Vigna mungo HOM05D006361 ORTHO05D007824 7.7e-08 62.8 68 42.6


User provided reference genes

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