Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0008783 Sechium edule HOM05D005407 ORTHO05D006544 1.2e-178 629.8 329 100.0
CsaV3_6G043820 Cucumis sativus L. HOM05D005407 ORTHO05D006544 1.3e-95 354.0 345 61.4
ClCG01G017290 Citrullus lanatus HOM05D005407 ORTHO05D006544 1.1e-91 340.9 363 61.2
MELO3C007607.2 Cucumis melo HOM05D005407 ORTHO05D006544 6.2e-87 325.1 345 62.0
Nn5g30501 Nelumbo nucifera HOM05D005407 ORTHO05D006544 1.5e-32 144.4 337 35.0
Manes.13G114000 Manihot esculenta HOM05D005407 ORTHO05D006544 1.4e-30 137.9 368 32.3
Nn1g04631 Nelumbo nucifera HOM05D005407 ORTHO05D006544 4.1e-30 136.3 323 35.6
GSVIVG01000158001 Vitis vinifera HOM05D005407 ORTHO05D006544 4.1e-30 136.3 336 37.8
Gohir.D11G205800 Gossypium hirsutum HOM05D005407 ORTHO05D006544 7.0e-30 135.6 342 34.5
Lj4g0004383 Lotus japonicus HOM05D005407 ORTHO05D006544 9.2e-30 135.2 322 38.5
Gorai.007G220900 Gossypium raimondii HOM05D005407 ORTHO05D006544 1.6e-29 134.4 342 33.6
Ciclev10025829m.g Citrus clementina HOM05D005407 ORTHO05D006544 2.0e-29 134.0 366 33.6
Potri.005G145100 Populus trichocarpa HOM05D005407 ORTHO05D006544 2.7e-29 133.7 379 32.2
Gohir.A12G074500 Gossypium hirsutum HOM05D005407 ORTHO05D006544 3.5e-29 133.3 346 35.5
Duzib264G0474 Durio zibethinus HOM05D005407 ORTHO05D006544 7.8e-29 132.1 369 33.3
Gohir.A11G217700 Gossypium hirsutum HOM05D005407 ORTHO05D006544 7.8e-29 132.1 343 33.8
Gorai.008G080000 Gossypium raimondii HOM05D005407 ORTHO05D006544 1.3e-28 131.3 345 35.1
CiPaw.02G004700 Carya illinoinensis HOM05D005407 ORTHO05D006544 1.7e-28 131.0 373 37.5
Potri.007G051800 Populus trichocarpa HOM05D005407 ORTHO05D006544 2.3e-28 130.6 391 33.0
TAR628G1677 Trochodendron aralioides HOM05D005407 ORTHO05D006544 2.9e-28 130.2 343 32.7
Haze_15320 Corylus avellana HOM05D005407 ORTHO05D006544 6.6e-28 129.0 361 33.5
Gohir.D12G072700 Gossypium hirsutum HOM05D005407 ORTHO05D006544 1.5e-27 127.9 350 34.6
Dinv26896 Davidia involucrata HOM05D005407 ORTHO05D006544 1.9e-27 127.5 341 35.5
Gohir.A02G153500 Gossypium hirsutum HOM05D005407 ORTHO05D006544 2.8e-26 123.6 327 33.6
QL06p039956 Quercus lobata HOM05D005407 ORTHO05D006544 2.8e-26 123.6 359 32.6
TPR.G23890 Trifolium pratense HOM05D005407 ORTHO05D006544 4.7e-26 122.9 339 34.8
Sabra07G0045500 Salix brachista HOM05D005407 ORTHO05D006544 6.1e-26 122.5 393 30.8
Sabra05G0114800 Salix brachista HOM05D005407 ORTHO05D006544 8.0e-26 122.1 237 38.4
Sabra05G0115900 Salix brachista HOM05D005407 ORTHO05D006544 8.0e-26 122.1 237 38.4
CiPaw.01G007800 Carya illinoinensis HOM05D005407 ORTHO05D006544 1.4e-25 121.3 344 32.8
Cpa.g.sc6.55 Carica papaya HOM05D005407 ORTHO05D006544 1.2e-24 118.2 335 37.3
Glyma.11G050800 Glycine max HOM05D005407 ORTHO05D006544 2.6e-24 117.1 324 36.7
Psat4g083080 Pisum sativum HOM05D005407 ORTHO05D006544 2.6e-24 117.1 323 35.0
Duzib187G0216 Durio zibethinus HOM05D005407 ORTHO05D006544 7.5e-24 115.5 394 34.3
Actinidia21238 Actinidia chinensis HOM05D005407 ORTHO05D006544 9.8e-24 115.2 315 36.2
CAN.G1075.9 Capsicum annuum HOM05D005407 ORTHO05D006544 1.3e-23 114.8 292 34.6
Oeu040602.1 Olea europaea HOM05D005407 ORTHO05D006544 1.3e-23 114.8 319 36.7
Solyc02g092720.1 Solanum lycopersicum HOM05D005407 ORTHO05D006544 1.3e-23 114.8 304 34.5
Glyma.05G103000 Glycine max HOM05D005407 ORTHO05D006544 2.9e-23 113.6 365 33.7
Lsat_1_v5_gn_4_162000 Lactuca sativa HOM05D005407 ORTHO05D006544 3.7e-23 113.2 317 32.5
Nitab4.5_0003878g0070 Nicotiana tabacum HOM05D005407 ORTHO05D006544 6.4e-23 112.5 306 35.6
Sopen02g037270 Solanum pennellii HOM05D005407 ORTHO05D006544 1.1e-22 111.7 306 34.3
Nitab4.5_0007941g0010 Nicotiana tabacum HOM05D005407 ORTHO05D006544 1.4e-22 111.3 320 37.2
Cfa004094 Carpinus fangiana HOM05D005407 ORTHO05D006544 2.4e-22 110.5 362 34.0
Gorai.003G028600 Gossypium raimondii HOM05D005407 ORTHO05D006544 3.2e-22 110.2 326 32.8
VMungo1011G0001 Vigna mungo HOM05D005407 ORTHO05D006544 4.1e-22 109.8 332 34.9
PGR004G2820 Punica granatum HOM05D005407 ORTHO05D006544 7.0e-22 109.0 347 34.9
CANSAT01G3084 Cannabis sativa HOM05D005407 ORTHO05D006544 9.2e-22 108.6 345 33.0
Gohir.D03G026900 Gossypium hirsutum HOM05D005407 ORTHO05D006544 1.2e-21 108.2 327 34.6
Phvul.002G013600 Phaseolus vulgaris HOM05D005407 ORTHO05D006544 1.6e-21 107.8 322 37.0
Eucgr.I00726 Eucalyptus grandis HOM05D005407 ORTHO05D006544 4.6e-21 106.3 355 33.8
PGSC0003DMG400024943 Solanum tuberosum HOM05D005407 ORTHO05D006544 4.6e-21 106.3 291 34.4
Lj2g0008966 Lotus japonicus HOM05D005407 ORTHO05D006544 1.7e-20 104.4 334 32.0
FvH4_1g17130 Fragaria vesca HOM05D005407 ORTHO05D006544 5.0e-20 102.8 371 31.0
FAN19G1545 Fragaria x ananassa HOM05D005407 ORTHO05D006544 5.0e-20 102.8 371 31.0
HanXRQChr12g0373231 Helianthus annuus HOM05D005407 ORTHO05D006544 6.6e-20 102.4 299 32.1
TWI09G0600 Tripterygium wilfordii HOM05D005407 ORTHO05D006544 6.6e-20 102.4 320 33.4
MSTRG.3457 Avicennia marina HOM05D005407 ORTHO05D006544 8.6e-20 102.1 322 32.3
FAN26G3453 Fragaria x ananassa HOM05D005407 ORTHO05D006544 8.6e-20 102.1 371 31.0
SalBow1G5175 Salvia bowleyana HOM05D005407 ORTHO05D006544 8.6e-20 102.1 297 34.7
Thecc.01G067900 Theobroma cacao HOM05D005407 ORTHO05D006544 8.6e-20 102.1 390 29.5
TWI53G1118 Tripterygium wilfordii HOM05D005407 ORTHO05D006544 1.5e-19 101.3 355 30.7
Duzib147G1232 Durio zibethinus HOM05D005407 ORTHO05D006544 2.5e-19 100.5 373 30.8
MSTRG.2839 Avicennia marina HOM05D005407 ORTHO05D006544 3.3e-19 100.1 321 32.1
VMungo1215G1030 Vigna mungo HOM05D005407 ORTHO05D006544 3.3e-19 100.1 317 36.9
FAN23G2725 Fragaria x ananassa HOM05D005407 ORTHO05D006544 4.3e-19 99.8 361 32.7
Glyma.17G164300 Glycine max HOM05D005407 ORTHO05D006544 5.6e-19 99.4 336 33.6
MD02G1181700 Malus domestica HOM05D005407 ORTHO05D006544 5.6e-19 99.4 359 33.1
MSTRG.23698 Avicennia marina HOM05D005407 ORTHO05D006544 1.6e-18 97.8 342 30.7
Glyma.01G191400 Glycine max HOM05D005407 ORTHO05D006544 4.7e-18 96.3 316 34.2
MD15G1292600 Malus domestica HOM05D005407 ORTHO05D006544 4.7e-18 96.3 364 29.9
Prupe.6G224800 Prunus persica HOM05D005407 ORTHO05D006544 4.7e-18 96.3 288 33.7
Sp2g29310 Schrenkiella parvula HOM05D005407 ORTHO05D006544 1.8e-17 94.4 291 33.0
arahy.Tifrunner.gnm1.ann1.IRX7P6 Arachis hypogaea HOM05D005407 ORTHO05D006544 5.2e-17 92.8 327 31.2
BcaC04g19788 Brassica carinata HOM05D005407 ORTHO05D006544 5.2e-17 92.8 304 31.6
C09p51650 Brassica napus HOM05D005407 ORTHO05D006544 5.2e-17 92.8 304 31.6
BolC9t58026H Brassica oleracea HOM05D005407 ORTHO05D006544 5.2e-17 92.8 304 31.6
Cc07_g06740 Coffea canephora HOM05D005407 ORTHO05D006544 1.5e-16 91.3 323 30.0
RcHm_v2.0_Chr2g0107301 Rosa chinensis HOM05D005407 ORTHO05D006544 1.5e-16 91.3 358 29.3
arahy.Tifrunner.gnm1.ann1.UV71K9 Arachis hypogaea HOM05D005407 ORTHO05D006544 2.2e-15 87.4 328 33.5
SGA_v2.0_scaffold15G07407 Striga asiatica HOM05D005407 ORTHO05D006544 2.2e-15 87.4 333 31.8
Aqoxy6G02765 Aquilegia oxysepala HOM05D005407 ORTHO05D006544 2.9e-15 87.0 199 35.2
FAN28G2899 Fragaria x ananassa HOM05D005407 ORTHO05D006544 2.9e-15 87.0 359 31.8
Peaxi162Scf00365g00076 Petunia axillaris HOM05D005407 ORTHO05D006544 3.7e-15 86.7 299 30.4
PSO541G0358 Papaver somniferum HOM05D005407 ORTHO05D006544 4.9e-15 86.3 341 32.3
Sed0011473 Sechium edule HOM05D005407 ORTHO05D006544 4.9e-15 86.3 305 32.5
A09p09420 Brassica napus HOM05D005407 ORTHO05D006544 1.9e-14 84.3 296 31.8
Gorai.011G107400 Gossypium raimondii HOM05D005407 ORTHO05D006544 1.9e-14 84.3 288 33.0
BcaB04g20064 Brassica carinata HOM05D005407 ORTHO05D006544 4.1e-14 83.2 297 30.0
Gohir.D10G097800 Gossypium hirsutum HOM05D005407 ORTHO05D006544 4.1e-14 83.2 285 32.3
PSO675G4008 Papaver somniferum HOM05D005407 ORTHO05D006544 4.1e-14 83.2 363 28.1
Manes.12G112400 Manihot esculenta HOM05D005407 ORTHO05D006544 1.2e-13 81.6 373 29.0
Lalb_Chr16g0389101 Lupinus albus HOM05D005407 ORTHO05D006544 1.6e-13 81.3 310 29.0
Actinidia32821 Actinidia chinensis HOM05D005407 ORTHO05D006544 2.7e-13 80.5 320 30.6
BraA09t36591Z Brassica rapa HOM05D005407 ORTHO05D006544 3.5e-13 80.1 307 30.6
Lsat_1_v5_gn_3_87740 Lactuca sativa HOM05D005407 ORTHO05D006544 6.0e-13 79.3 283 28.6
Migut.H00374 Erythranthe guttata HOM05D005407 ORTHO05D006544 1.3e-12 78.2 314 33.8
Thhalv10005384m.g Eutrema salsugineum HOM05D005407 ORTHO05D006544 1.3e-12 78.2 297 27.6
C09p11100 Brassica napus HOM05D005407 ORTHO05D006544 2.3e-12 77.4 306 28.8
Gohir.A10G090300 Gossypium hirsutum HOM05D005407 ORTHO05D006544 2.3e-12 77.4 288 30.2
BolC9t53999H Brassica oleracea HOM05D005407 ORTHO05D006544 5.1e-12 76.3 306 28.1
HPP92_007853 Vanilla planifolia HOM05D005407 ORTHO05D006544 5.1e-12 76.3 301 30.6
ATR0661G396 Amborella trichopoda HOM05D005407 ORTHO05D006544 6.6e-12 75.9 307 27.7
Solyc03g150114.1 Solanum lycopersicum HOM05D005407 ORTHO05D006544 1.9e-11 74.3 210 32.4
BcaC04g23209 Brassica carinata HOM05D005407 ORTHO05D006544 3.3e-11 73.6 298 28.2
CsaV3_2G016540 Cucumis sativus L. HOM05D005407 ORTHO05D006544 3.3e-11 73.6 295 30.2
CSS0012811 Camellia sinensis var. sinensis HOM05D005407 ORTHO05D006544 4.3e-11 73.2 218 38.1
CARHR280260 Cardamine hirsuta HOM05D005407 ORTHO05D006544 5.6e-11 72.8 296 28.0
Peaxi162Scf00264g00321 Petunia axillaris HOM05D005407 ORTHO05D006544 5.6e-11 72.8 173 32.4
Carub.0008s2714 Capsella rubella HOM05D005407 ORTHO05D006544 9.5e-11 72.0 296 27.0
Medtr4g095320 Medicago truncatula HOM05D005407 ORTHO05D006544 1.2e-10 71.6 338 27.8
Atru.chr3.207 Acer truncatum HOM05D005407 ORTHO05D006544 2.1e-10 70.9 282 31.6
Aa31LG1G15900 Aethionema arabicum HOM05D005407 ORTHO05D006544 2.1e-10 70.9 251 29.5
MELO3C020864.2 Cucumis melo HOM05D005407 ORTHO05D006544 3.6e-10 70.1 296 30.4
Dinv30062 Davidia involucrata HOM05D005407 ORTHO05D006544 4.7e-10 69.7 266 28.2
HanXRQChr11g0322471 Helianthus annuus HOM05D005407 ORTHO05D006544 4.7e-10 69.7 187 28.3
unitig_62.g23420 Utricularia gibba HOM05D005407 ORTHO05D006544 4.7e-10 69.7 318 29.9
CDE07G1425 Ceratophyllum demersum HOM05D006600 ORTHO05D008446 1.1e-09 68.6 312 24.0
BolC7t42952H Brassica oleracea HOM05D005407 ORTHO05D006544 1.8e-09 67.8 297 27.6
AL8G43980 Arabidopsis lyrata HOM05D005407 ORTHO05D006544 6.8e-09 65.9 308 29.5
EL10Ac6g15663 Beta vulgaris HOM05D005407 ORTHO05D006544 6.8e-09 65.9 267 33.3
unitig_52.g17607 Utricularia gibba HOM05D005407 ORTHO05D006544 2.0e-08 64.3 302 29.8
DCAR_021471 Daucus carota HOM05D005407 ORTHO05D006544 2.6e-08 63.9 315 27.3
CDE04G2817 Ceratophyllum demersum HOM05D005407 ORTHO05D006544 3.4e-08 63.5 300 23.0
ClCG02G012410 Citrullus lanatus HOM05D005407 ORTHO05D006544 4.4e-08 63.2 296 28.4
A07p16540 Brassica napus HOM05D005407 ORTHO05D006544 9.9e-08 62.0 295 26.8
BraA07t29378Z Brassica rapa HOM05D005407 ORTHO05D006544 9.9e-08 62.0 295 26.8
TAR625G0330 Trochodendron aralioides HOM05D003020 ORTHO05D003226 9.9e-08 62.0 281 26.0
Phvul.003G237500 Phaseolus vulgaris HOM05D005407 ORTHO05D006544 3.7e-07 60.1 318 30.5
THA.LOC104827519 Tarenaya hassleriana HOM05D005407 ORTHO05D006544 6.4e-07 59.3 260 29.6
Zm00001eb108270 Zea mays HOM05D013881 ORTHO05D016369 6.4e-07 59.3 130 39.2
AT5G67350 Arabidopsis thaliana HOM05D005407 ORTHO05D006544 1.1e-06 58.5 248 27.8
Os07g0589600 Oryza sativa ssp. japonica HOM05D013881 ORTHO05D016369 1.9e-06 57.8 266 27.4
Thecc.09G173200 Theobroma cacao HOM05D003020 ORTHO05D003226 3.2e-06 57.0 205 26.8
Rhsim08G0096100 Rhododendron simsii HOM05D005407 ORTHO05D006544 9.2e-06 55.5 260 28.5


User provided reference genes

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