Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0008740 Sechium edule HOM05D002144 ORTHO05D002170 6.4e-51 204.1 132 100.0
MELO3C022686.2 Cucumis melo HOM05D002144 ORTHO05D002170 4.4e-23 111.7 144 50.7
ClCG07G014400 Citrullus lanatus HOM05D002144 ORTHO05D002170 4.8e-22 108.2 131 57.3
Dinv37840 Davidia involucrata HOM05D002144 ORTHO05D002170 6.5e-19 97.8 137 43.1
PGR119G1483 Punica granatum HOM05D002144 ORTHO05D002170 1.6e-17 93.2 143 42.0
Hma1.2p1_0229F.1_g096900 Hydrangea macrophylla HOM05D002144 ORTHO05D002170 1.8e-16 89.7 149 45.0
Actinidia24441 Actinidia chinensis HOM05D002144 ORTHO05D002170 6.7e-16 87.8 145 46.2
FvH4_6g35330 Fragaria vesca HOM05D002144 ORTHO05D002170 1.5e-15 86.7 141 39.7
FAN09G1588 Fragaria x ananassa HOM05D002144 ORTHO05D002170 1.5e-15 86.7 141 39.7
GSVIVG01016701001 Vitis vinifera HOM05D002144 ORTHO05D002170 1.5e-15 86.7 144 38.9
Nn8g38544 Nelumbo nucifera HOM05D002144 ORTHO05D002170 2.6e-15 85.9 135 43.0
Sc15g0000660 Simmondsia chinensis HOM05D002144 ORTHO05D002170 2.6e-15 85.9 139 46.8
Duzib235G0612 Durio zibethinus HOM05D002144 ORTHO05D002170 4.4e-15 85.1 141 41.8
MD17G1150200 Malus domestica HOM05D002144 ORTHO05D002170 4.4e-15 85.1 133 44.4
CiPaw.01G214500 Carya illinoinensis HOM05D002144 ORTHO05D002170 5.7e-15 84.7 135 45.9
Oeu059028.1 Olea europaea HOM05D002144 ORTHO05D002170 1.7e-14 83.2 148 41.9
QL05p002979 Quercus lobata HOM05D002144 ORTHO05D002170 2.8e-14 82.4 140 42.9
Duzib192G0893 Durio zibethinus HOM05D002144 ORTHO05D002170 4.8e-14 81.6 139 42.4
RcHm_v2.0_Chr2g0146781 Rosa chinensis HOM05D002144 ORTHO05D002170 6.3e-14 81.3 141 43.3
TWI23G1155 Tripterygium wilfordii HOM05D002144 ORTHO05D002170 6.3e-14 81.3 144 39.6
MD09G1176600 Malus domestica HOM05D002144 ORTHO05D002170 8.2e-14 80.9 133 43.6
Dinv20398 Davidia involucrata HOM05D002144 ORTHO05D002170 1.1e-13 80.5 145 37.2
Ca_04812_v3 Cicer arietinum L. HOM05D002144 ORTHO05D002170 3.1e-13 79.0 141 40.4
Gohir.A05G138200 Gossypium hirsutum HOM05D002144 ORTHO05D002170 5.3e-13 78.2 140 38.6
MBI19_g38000_MAGBIO Magnolia biondii HOM05D002144 ORTHO05D002170 5.3e-13 78.2 139 36.7
Cpa.g.sc25.165 Carica papaya HOM05D002144 ORTHO05D002170 9.1e-13 77.4 39 84.6
Rhsim08G0242200 Rhododendron simsii HOM05D002144 ORTHO05D002170 1.2e-12 77.0 136 44.1
ATR0681G069 Amborella trichopoda HOM05D002144 ORTHO05D002170 1.6e-12 76.6 133 38.3
Oeu008518.1 Olea europaea HOM05D002144 ORTHO05D002170 2.0e-12 76.3 153 37.3
Hund05715 Selenicereus undatus HOM05D002144 ORTHO05D002170 2.6e-12 75.9 151 38.4
Zm00001eb040560 Zea mays HOM05D002144 ORTHO05D002170 2.6e-12 75.9 140 44.3
CiPaw.02G133200 Carya illinoinensis HOM05D002144 ORTHO05D002170 1.0e-11 73.9 39 82.1
Ciclev10026754m.g Citrus clementina HOM05D002144 ORTHO05D002170 1.0e-11 73.9 143 43.4
FAN14G0119 Fragaria x ananassa HOM05D002144 ORTHO05D002170 1.3e-11 73.6 133 36.1
Actinidia21816 Actinidia chinensis HOM05D002144 ORTHO05D002170 1.7e-11 73.2 37 83.8
MSTRG.10926 Avicennia marina HOM05D002144 ORTHO05D002170 1.7e-11 73.2 148 39.9
Haze_16090 Corylus avellana HOM05D002144 ORTHO05D002170 1.7e-11 73.2 38 81.6
Cc04_g00930 Coffea canephora HOM05D002144 ORTHO05D002170 2.2e-11 72.8 152 41.4
EL10Ac7g16456 Beta vulgaris HOM05D002144 ORTHO05D002170 5.0e-11 71.6 135 36.3
Atru.chr1.4136 Acer truncatum HOM05D002144 ORTHO05D002170 6.5e-11 71.2 129 41.1
SGA_v2.0_scaffold4G02090 Striga asiatica HOM05D002144 ORTHO05D002170 8.5e-11 70.9 37 81.1
Medtr8g022300 Medicago truncatula HOM05D002144 ORTHO05D002170 1.1e-10 70.5 135 37.8
Psat4g166680 Pisum sativum HOM05D002144 ORTHO05D002170 1.1e-10 70.5 110 41.8
Potri.003G070500 Populus trichocarpa HOM05D002144 ORTHO05D002170 1.1e-10 70.5 38 78.9
Sabra01G0128200 Salix brachista HOM05D002144 ORTHO05D002170 1.1e-10 70.5 141 41.8
Manes.04G148800 Manihot esculenta HOM05D002144 ORTHO05D002170 1.5e-10 70.1 39 84.6
Peaxi162Scf00207g01541 Petunia axillaris HOM05D002144 ORTHO05D002170 1.9e-10 69.7 143 35.7
TWI14G1240 Tripterygium wilfordii HOM05D002144 ORTHO05D002170 1.9e-10 69.7 144 38.9
PGR102G1253 Punica granatum HOM05D002144 ORTHO05D002170 2.5e-10 69.3 132 35.6
Thecc.06G126600 Theobroma cacao HOM05D002144 ORTHO05D002170 2.5e-10 69.3 37 78.4
Potri.001G164800 Populus trichocarpa HOM05D002144 ORTHO05D002170 3.2e-10 68.9 38 76.3
unitig_748.g8062 Utricularia gibba HOM05D002144 ORTHO05D002170 4.2e-10 68.6 136 36.8
MSTRG.9534 Avicennia marina HOM05D002144 ORTHO05D002170 7.2e-10 67.8 140 37.9
Ca_30856_v3 Cicer arietinum L. HOM05D002144 ORTHO05D002170 7.2e-10 67.8 38 76.3
Thhalv10011865m.g Eutrema salsugineum HOM05D002144 ORTHO05D002170 7.2e-10 67.8 145 34.5
Lj3g0016932 Lotus japonicus HOM05D002144 ORTHO05D002170 7.2e-10 67.8 134 38.1
Gorai.009G144700 Gossypium raimondii HOM05D002144 ORTHO05D002170 9.4e-10 67.4 135 34.8
Prupe.3G035700 Prunus persica HOM05D002144 ORTHO05D002170 9.4e-10 67.4 100 44.0
Aa31LG10G1360 Aethionema arabicum HOM05D000815 ORTHO05D000636 1.2e-09 67.0 141 35.5
Migut.I01115 Erythranthe guttata HOM05D002144 ORTHO05D002170 1.2e-09 67.0 35 82.9
MSTRG.9537 Avicennia marina HOM05D002144 ORTHO05D002170 1.6e-09 66.6 141 39.0
COL.COLO4_30825 Corchorus olitorius HOM05D002144 ORTHO05D002170 2.1e-09 66.2 37 75.7
VMungo0331G1113 Vigna mungo HOM05D002144 ORTHO05D002170 2.1e-09 66.2 139 35.3
Glyma.07G043000 Glycine max HOM05D002144 ORTHO05D002170 2.7e-09 65.9 35 80.0
Manes.11G015300 Manihot esculenta HOM05D002144 ORTHO05D002170 2.7e-09 65.9 39 79.5
arahy.Tifrunner.gnm1.ann1.MBM2VS Arachis hypogaea HOM05D002144 ORTHO05D002170 3.6e-09 65.5 39 76.9
MELO3C024325.2 Cucumis melo HOM05D002144 ORTHO05D002170 3.6e-09 65.5 37 70.3
Eucgr.I02133 Eucalyptus grandis HOM05D002144 ORTHO05D002170 3.6e-09 65.5 35 80.0
FAN02G3229 Fragaria x ananassa HOM05D002144 ORTHO05D002170 3.6e-09 65.5 133 38.3
Phvul.010G126600 Phaseolus vulgaris HOM05D002144 ORTHO05D002170 3.6e-09 65.5 108 41.7
AL1G62770 Arabidopsis lyrata HOM05D002144 ORTHO05D002170 4.7e-09 65.1 146 35.6
ClCG09G001220 Citrullus lanatus HOM05D002144 ORTHO05D002170 4.7e-09 65.1 37 73.0
Glyma.16G011400 Glycine max HOM05D002144 ORTHO05D002170 4.7e-09 65.1 31 87.1
CAN.G1743.3 Capsicum annuum HOM05D002144 ORTHO05D002170 6.1e-09 64.7 35 77.1
Gohir.A09G075400 Gossypium hirsutum HOM05D002144 ORTHO05D002170 6.1e-09 64.7 37 75.7
Gohir.D09G075100 Gossypium hirsutum HOM05D002144 ORTHO05D002170 6.1e-09 64.7 37 75.7
Gorai.006G090200 Gossypium raimondii HOM05D002144 ORTHO05D002170 6.1e-09 64.7 37 75.7
Nitab4.5_0003137g0020 Nicotiana tabacum HOM05D002144 ORTHO05D002170 6.1e-09 64.7 138 37.0
Solyc06g063060.3 Solanum lycopersicum HOM05D002144 ORTHO05D002170 6.1e-09 64.7 40 72.5
Sopen06g022510 Solanum pennellii HOM05D002144 ORTHO05D002170 6.1e-09 64.7 40 72.5
PGSC0003DMG400004897 Solanum tuberosum HOM05D002144 ORTHO05D002170 6.1e-09 64.7 40 72.5
Ah.08g217150 Amaranthus hybridus HOM05D002144 ORTHO05D002170 8.0e-09 64.3 126 35.7
Sed0018160 Sechium edule HOM05D002144 ORTHO05D002170 8.0e-09 64.3 85 42.4
CARHR044400 Cardamine hirsuta HOM05D002144 ORTHO05D002170 1.0e-08 63.9 143 33.6
AT1G54070 Arabidopsis thaliana HOM05D002144 ORTHO05D002170 1.4e-08 63.5 37 70.3
Lalb_Chr10g0101281 Lupinus albus HOM05D002144 ORTHO05D002170 1.4e-08 63.5 30 86.7
MBI13_g01666_MAGBIO Magnolia biondii HOM05D002144 ORTHO05D002170 1.4e-08 63.5 132 34.8
FAN05G3077 Fragaria x ananassa HOM05D002144 ORTHO05D002170 1.8e-08 63.2 141 39.0
C06p15600 Brassica napus HOM05D002144 ORTHO05D002170 2.3e-08 62.8 36 72.2
BolC6t36748H Brassica oleracea HOM05D002144 ORTHO05D002170 2.3e-08 62.8 36 72.2
BcaC08g44159 Brassica carinata HOM05D002144 ORTHO05D002170 3.0e-08 62.4 77 41.6
A05p17730 Brassica napus HOM05D002144 ORTHO05D002170 4.0e-08 62.0 78 44.9
BraA05t20665Z Brassica rapa HOM05D002144 ORTHO05D002170 4.0e-08 62.0 78 44.9
CsaV3_7G034150 Cucumis sativus L. HOM05D002144 ORTHO05D002170 4.0e-08 62.0 34 76.5
Nitab4.5_0002716g0090 Nicotiana tabacum HOM05D002144 ORTHO05D002170 4.0e-08 62.0 138 32.6
vmacro15066 Vaccinium macrocarpon HOM05D002144 ORTHO05D002170 4.0e-08 62.0 127 40.2
BcaB07g33437 Brassica carinata HOM05D002144 ORTHO05D002170 5.2e-08 61.6 38 63.2
SalBow7G2197 Salvia bowleyana HOM05D002144 ORTHO05D002170 5.2e-08 61.6 138 42.8
Sed0008928 Sechium edule HOM05D002144 ORTHO05D002170 6.7e-08 61.2 37 70.3
Sp1g40510 Schrenkiella parvula HOM05D001069 ORTHO05D002170 8.8e-08 60.8 37 73.0
HanXRQChr04g0094481 Helianthus annuus HOM05D002144 ORTHO05D002170 1.5e-07 60.1 137 35.8
CsaV3_3G030890 Cucumis sativus L. HOM05D002144 ORTHO05D002170 2.0e-07 59.7 52 63.5
AUR62005218 Chenopodium quinoa HOM05D002144 ORTHO05D002170 2.6e-07 59.3 36 66.7
AUR62000749 Chenopodium quinoa HOM05D002144 ORTHO05D002170 4.4e-07 58.5 36 66.7
AUR62000750 Chenopodium quinoa HOM05D002144 ORTHO05D002170 4.4e-07 58.5 36 66.7
Aa31LG8G1430 Aethionema arabicum HOM05D002144 ORTHO05D002170 5.7e-07 58.2 29 79.3
Hund07106 Selenicereus undatus HOM05D002144 ORTHO05D002170 5.7e-07 58.2 31 77.4
BcaB02g10863 Brassica carinata HOM05D002144 ORTHO05D002170 7.5e-07 57.8 35 65.7
Nitab4.5_0003113g0120 Nicotiana tabacum HOM05D002144 ORTHO05D002170 7.5e-07 57.8 32 75.0
Os09g0437500 Oryza sativa ssp. japonica HOM05D002144 ORTHO05D002170 7.5e-07 57.8 159 38.4
CANSAT56G1652 Cannabis sativa HOM05D002144 ORTHO05D002170 9.7e-07 57.4 35 68.6
Migut.D00918 Erythranthe guttata HOM05D002144 ORTHO05D002170 1.3e-06 57.0 134 36.6
Lsat_1_v5_gn_4_91600 Lactuca sativa HOM05D002144 ORTHO05D002170 1.3e-06 57.0 132 34.1
PSO223G0021 Papaver somniferum HOM05D002144 ORTHO05D002170 1.3e-06 57.0 134 29.1
Sc09g0002900 Simmondsia chinensis HOM05D002144 ORTHO05D002170 1.3e-06 57.0 35 65.7
EL10Ac4g09903 Beta vulgaris HOM05D002144 ORTHO05D002170 2.2e-06 56.2 36 63.9
Carub.0001s4330 Capsella rubella HOM05D002144 ORTHO05D002170 2.2e-06 56.2 148 31.1
CAN.G1459.22 Capsicum annuum HOM05D002144 ORTHO05D002170 2.2e-06 56.2 31 74.2
Nitab4.5_0007800g0010 Nicotiana tabacum HOM05D002144 ORTHO05D002170 2.2e-06 56.2 31 74.2
Solyc01g099840.3 Solanum lycopersicum HOM05D002144 ORTHO05D002170 2.2e-06 56.2 31 74.2
Sopen00g009360 Solanum pennellii HOM05D002144 ORTHO05D002170 2.2e-06 56.2 31 74.2
Sopen01g043350 Solanum pennellii HOM05D002144 ORTHO05D002170 2.2e-06 56.2 31 74.2
PGSC0003DMG400024720 Solanum tuberosum HOM05D002144 ORTHO05D002170 2.2e-06 56.2 31 74.2
THA.LOC104822669 Tarenaya hassleriana HOM05D002144 ORTHO05D002170 2.2e-06 56.2 39 61.5
TPR.G16655 Trifolium pratense HOM05D002144 ORTHO05D002170 2.2e-06 56.2 29 79.3
Hund21717 Selenicereus undatus HOM05D002144 ORTHO05D002170 2.8e-06 55.8 31 74.2
Peaxi162Scf00037g01327 Petunia axillaris HOM05D002144 ORTHO05D002170 3.7e-06 55.5 32 68.8
Ah.04g161190 Amaranthus hybridus HOM05D002144 ORTHO05D002170 4.8e-06 55.1 32 68.8
PSO386G0143 Papaver somniferum HOM05D002144 ORTHO05D002170 6.3e-06 54.7 134 28.4
Eucgr.B01910 Eucalyptus grandis HOM05D002144 ORTHO05D002170 8.2e-06 54.3 32 68.8


User provided reference genes

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