Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0008724 Sechium edule HOM05D005467 ORTHO05D006523 4.8e-241 837.4 418 100.0
CsaV3_5G034840 Cucumis sativus L. HOM05D005467 ORTHO05D006523 4.6e-212 741.1 418 87.8
ClCG05G022280 Citrullus lanatus HOM05D005467 ORTHO05D006523 1.4e-203 713.0 493 75.7
Cfa008565 Carpinus fangiana HOM05D005467 ORTHO05D006523 4.1e-192 674.9 418 78.2
CiPaw.05G246600 Carya illinoinensis HOM05D005467 ORTHO05D006523 1.6e-188 662.9 418 78.0
Ciclev10015390m.g Citrus clementina HOM05D005467 ORTHO05D006523 4.4e-186 654.8 411 76.6
Thecc.02G211500 Theobroma cacao HOM05D005467 ORTHO05D006523 3.1e-184 648.7 411 74.2
Gorai.012G123600 Gossypium raimondii HOM05D005467 ORTHO05D006523 4.1e-184 648.3 412 75.7
MD16G1031500 Malus domestica HOM05D005467 ORTHO05D006523 5.3e-184 647.9 411 76.2
Potri.010G116200 Populus trichocarpa HOM05D005467 ORTHO05D006523 5.3e-184 647.9 416 75.2
QL01p002615 Quercus lobata HOM05D005467 ORTHO05D006523 1.6e-183 646.4 492 66.5
Nn3g18021 Nelumbo nucifera HOM05D005467 ORTHO05D006523 1.1e-181 640.2 411 75.2
Gohir.A04G099200 Gossypium hirsutum HOM05D005467 ORTHO05D006523 1.9e-181 639.4 412 75.0
RcHm_v2.0_Chr4g0433781 Rosa chinensis HOM05D005467 ORTHO05D006523 3.2e-181 638.6 411 75.2
GSVIVG01011792001 Vitis vinifera HOM05D005467 ORTHO05D006523 2.1e-180 636.0 411 74.2
TAR629G1677 Trochodendron aralioides HOM05D005467 ORTHO05D006523 8.0e-180 634.0 408 75.0
CSS0047900 Camellia sinensis var. sinensis HOM05D005467 ORTHO05D006523 4.0e-179 631.7 416 73.3
Glyma.10G266400 Glycine max HOM05D005467 ORTHO05D006523 5.2e-179 631.3 418 72.0
PGR119G0286 Punica granatum HOM05D005467 ORTHO05D006523 1.2e-178 630.2 411 74.7
FAN07G0694 Fragaria x ananassa HOM05D005467 ORTHO05D006523 2.0e-178 629.4 411 74.0
FvH4_4g26200 Fragaria vesca HOM05D005467 ORTHO05D006523 4.4e-178 628.2 411 73.5
Phvul.007G035400 Phaseolus vulgaris HOM05D005467 ORTHO05D006523 5.7e-178 627.9 418 72.2
Hma1.2p1_0114F.1_g055340 Hydrangea macrophylla HOM05D005467 ORTHO05D006523 7.5e-178 627.5 424 71.9
Actinidia14942 Actinidia chinensis HOM05D005467 ORTHO05D006523 1.3e-177 626.7 414 72.7
arahy.Tifrunner.gnm1.ann1.U1J3BU Arachis hypogaea HOM05D005467 ORTHO05D006523 2.2e-177 625.9 411 72.3
MELO3C012295.2 Cucumis melo HOM05D005467 ORTHO05D006523 4.8e-177 624.8 360 87.5
Glyma.20G124100 Glycine max HOM05D005467 ORTHO05D006523 8.3e-177 624.0 416 72.4
TWI31G0476 Tripterygium wilfordii HOM05D005467 ORTHO05D006523 1.1e-176 623.6 411 72.3
VMungo0720G1946 Vigna mungo HOM05D005467 ORTHO05D006523 1.4e-176 623.2 418 71.1
Sabra10G0087600 Salix brachista HOM05D005467 ORTHO05D006523 1.0e-174 617.1 438 70.3
arahy.Tifrunner.gnm1.ann1.F0PHAM Arachis hypogaea HOM05D005467 ORTHO05D006523 2.9e-174 615.5 430 69.5
Sabra10G0086000 Salix brachista HOM05D005467 ORTHO05D006523 8.5e-174 614.0 442 69.5
Eucgr.G02222 Eucalyptus grandis HOM05D005467 ORTHO05D006523 1.1e-173 613.6 418 70.8
Lalb_Chr21g0308561 Lupinus albus HOM05D005467 ORTHO05D006523 1.1e-173 613.6 413 71.4
Lj5g0001822 Lotus japonicus HOM05D005467 ORTHO05D006523 3.2e-173 612.1 415 70.6
CANSAT01G3134 Cannabis sativa HOM05D005467 ORTHO05D006523 1.6e-172 609.8 420 71.9
Manes.06G062500 Manihot esculenta HOM05D005467 ORTHO05D006523 2.1e-172 609.4 411 71.3
Aqoxy3G00153 Aquilegia oxysepala HOM05D005467 ORTHO05D006523 4.7e-172 608.2 408 72.8
TPR.G4835 Trifolium pratense HOM05D005467 ORTHO05D006523 4.7e-172 608.2 411 69.6
PSO063G5439 Papaver somniferum HOM05D005467 ORTHO05D006523 8.0e-172 607.4 405 71.6
PSO782G0553 Papaver somniferum HOM05D005467 ORTHO05D006523 3.0e-171 605.5 423 69.7
Migut.L00826 Erythranthe guttata HOM05D005467 ORTHO05D006523 6.8e-171 604.4 419 70.2
Migut.L00653 Erythranthe guttata HOM05D005467 ORTHO05D006523 8.8e-171 604.0 419 69.9
Rhsim09G0101300 Rhododendron simsii HOM05D005467 ORTHO05D006523 4.1e-168 595.1 453 66.0
ECA246G2902 Erigeron canadensis HOM05D005467 ORTHO05D006523 7.7e-167 590.9 407 68.8
MBI10_g46301_MAGBIO Magnolia biondii HOM05D005467 ORTHO05D006523 7.7e-167 590.9 362 77.3
Medtr1g108650 Medicago truncatula HOM05D005467 ORTHO05D006523 7.7e-167 590.9 407 68.8
HanXRQChr15g0477671 Helianthus annuus HOM05D005467 ORTHO05D006523 2.3e-166 589.3 411 67.9
Peaxi162Scf00205g00928 Petunia axillaris HOM05D005467 ORTHO05D006523 2.3e-166 589.3 409 68.9
Lj6C750G3 Lonicera japonica HOM05D005467 ORTHO05D006523 1.2e-164 583.6 411 69.1
Psat6g222960 Pisum sativum HOM05D005467 ORTHO05D006523 4.7e-164 581.6 415 66.7
Prupe.1G321400 Prunus persica HOM05D005467 ORTHO05D006523 4.7e-164 581.6 363 77.1
CAN.G1489.4 Capsicum annuum HOM05D005467 ORTHO05D006523 8.0e-164 580.9 409 68.7
Atru.chr11.358 Acer truncatum HOM05D005467 ORTHO05D006523 1.0e-163 580.5 379 73.6
FAN12G3855 Fragaria x ananassa HOM05D005467 ORTHO05D006523 1.4e-163 580.1 411 69.8
FAN12G1869 Fragaria x ananassa HOM05D005467 ORTHO05D006523 6.8e-163 577.8 411 69.8
Os01g0506200 Oryza sativa ssp. japonica HOM05D005467 ORTHO05D006523 4.4e-162 575.1 408 67.4
AUR62014129 Chenopodium quinoa HOM05D005467 ORTHO05D006523 5.7e-162 574.7 433 65.1
Sopen05g004250 Solanum pennellii HOM05D005467 ORTHO05D006523 2.2e-161 572.8 409 67.5
Nitab4.5_0000350g0200 Nicotiana tabacum HOM05D005467 ORTHO05D006523 7.0e-160 567.8 403 68.2
Duzib248G1088 Durio zibethinus HOM05D005467 ORTHO05D006523 3.5e-159 565.5 412 69.2
DCAR_007277 Daucus carota HOM05D005467 ORTHO05D006523 3.3e-157 558.9 406 64.8
Ca_11108_v3 Cicer arietinum L. HOM05D005467 ORTHO05D006523 2.1e-156 556.2 415 65.8
Ah.02g128100 Amaranthus hybridus HOM05D005467 ORTHO05D006523 2.9e-153 545.8 426 62.2
Solyc05g008420.4 Solanum lycopersicum HOM05D005467 ORTHO05D006523 3.2e-152 542.3 392 66.8
Cpa.g.sc65.104 Carica papaya HOM05D005467 ORTHO05D006523 3.0e-150 535.8 411 65.2
TAR622G1271 Trochodendron aralioides HOM05D005467 ORTHO05D006523 3.2e-144 515.8 341 73.3
MSTRG.879 Avicennia marina HOM05D005467 ORTHO05D006523 2.7e-143 512.7 347 70.6
Dinv05879 Davidia involucrata HOM05D005467 ORTHO05D006523 4.6e-143 511.9 325 77.2
Hund24998 Selenicereus undatus HOM05D005467 ORTHO05D006523 3.0e-142 509.2 410 63.2
Gohir.D04G138632 Gossypium hirsutum HOM05D005467 ORTHO05D006523 3.3e-141 505.8 353 70.3
SGA_v2.0_scaffold50G18532 Striga asiatica HOM05D005467 ORTHO05D006523 1.6e-140 503.4 446 57.4
AUR62039552 Chenopodium quinoa HOM05D005467 ORTHO05D006523 8.1e-140 501.1 431 58.9
vmacro10622 Vaccinium macrocarpon HOM05D005467 ORTHO05D006523 2.2e-137 493.0 463 57.2
Gohir.D04G138566 Gossypium hirsutum HOM05D005467 ORTHO05D006523 2.2e-121 439.9 279 75.6
unitig_21.g20024 Utricularia gibba HOM05D000903 ORTHO05D000731 7.1e-120 434.9 395 55.4
SMO172G0164 Selaginella moellendorffii HOM05D005467 ORTHO05D006523 5.1e-118 428.7 404 54.0
ATR0041G011 Amborella trichopoda HOM05D005467 ORTHO05D006523 7.6e-114 414.8 418 50.2
Sc04g0005780 Simmondsia chinensis HOM05D005467 ORTHO05D006523 1.3e-113 414.1 267 75.7
Nitab4.5_0004524g0030 Nicotiana tabacum HOM05D005467 ORTHO05D006523 3.8e-113 412.5 285 70.5
Nitab4.5_0000293g0010 Nicotiana tabacum HOM05D005467 ORTHO05D006523 7.9e-111 404.8 421 48.0
Cc11_g09130 Coffea canephora HOM05D005467 ORTHO05D006523 3.0e-110 402.9 277 69.3
Lsat_1_v5_gn_3_54101 Lactuca sativa HOM05D005467 ORTHO05D006523 2.1e-108 396.7 276 68.1
Nitab4.5_0000350g0270 Nicotiana tabacum HOM05D005467 ORTHO05D006523 4.2e-104 382.5 414 47.6
AagrBONN_evm.TU.Sc2ySwM_344.4352 Anthoceros agrestis HOM05D005467 ORTHO05D006523 2.1e-103 380.2 414 47.8
Pp3c22_2590 Physcomitrium patens HOM05D005467 ORTHO05D006523 2.0e-98 363.6 410 45.9
HPP92_008650 Vanilla planifolia HOM05D005467 ORTHO05D006523 1.3e-97 360.9 276 62.3
Zm00001eb341680 Zea mays HOM05D005467 ORTHO05D006523 4.8e-92 342.4 315 54.9
Oeu064202.3 Olea europaea HOM05D005467 ORTHO05D006523 2.0e-90 337.0 264 65.5
CDE06G2222 Ceratophyllum demersum HOM05D005467 ORTHO05D006523 1.0e-89 334.7 220 74.5
Sopen02g012020 Solanum pennellii HOM05D005467 ORTHO05D006523 3.6e-87 326.2 426 40.1
Peaxi162Scf00159g00824 Petunia axillaris HOM05D005467 ORTHO05D006523 1.4e-86 324.3 551 36.3
SEGI_12457 Sequoiadendron giganteum HOM05D005467 ORTHO05D006523 1.8e-86 323.9 224 71.4
CBR_g17592 Chara braunii HOM05D005467 ORTHO05D006523 3.1e-83 313.2 400 42.8
Sopen02g012000 Solanum pennellii HOM05D005467 ORTHO05D006523 2.0e-82 310.5 413 39.7
Peaxi162Scf00159g00823 Petunia axillaris HOM05D005467 ORTHO05D006523 4.5e-82 309.3 446 38.6
Dinv04888 Davidia involucrata HOM05D005467 ORTHO05D006523 8.5e-81 305.1 184 80.4
PGSC0003DMG400029189 Solanum tuberosum HOM05D005467 ORTHO05D006523 3.2e-80 303.1 426 37.6
Sopen02g012010 Solanum pennellii HOM05D005467 ORTHO05D006523 6.7e-78 295.4 419 38.4
PGSC0003DMG400017873 Solanum tuberosum HOM05D005467 ORTHO05D006523 6.7e-78 295.4 417 37.6
Solyc02g038680.1 Solanum lycopersicum HOM05D005467 ORTHO05D006523 3.2e-72 276.6 412 38.1
FAN17G2566 Fragaria x ananassa HOM05D005467 ORTHO05D006523 2.8e-68 263.5 190 66.8
Sed0021963 Sechium edule HOM05D005467 ORTHO05D006523 2.9e-65 253.4 271 55.4
Solyc02g038670.3 Solanum lycopersicum HOM05D005467 ORTHO05D006523 4.0e-62 243.0 420 34.5
Haze_11049 Corylus avellana HOM05D005467 ORTHO05D006523 4.1e-59 233.0 165 71.5
Solyc02g038650.1 Solanum lycopersicum HOM05D005467 ORTHO05D006523 4.1e-59 233.0 344 37.2
Haze_11050 Corylus avellana HOM05D005467 ORTHO05D006523 1.6e-55 221.1 201 59.2
MCO12G173 Micromonas commoda HOM05D005467 ORTHO05D006523 2.1e-55 220.7 393 35.1
Cc11_g09120 Coffea canephora HOM05D005467 ORTHO05D006523 1.0e-54 218.4 146 72.6
PRCOL_00002109 Prasinoderma coloniale HOM05D005467 ORTHO05D006523 8.9e-54 215.3 388 34.3
Peaxi162Scf00205g00812 Petunia axillaris HOM05D005467 ORTHO05D006523 9.2e-51 205.3 405 33.6
Sopen02g012080 Solanum pennellii HOM05D005467 ORTHO05D006523 2.8e-47 193.7 381 32.3
PGSC0003DMG400029188 Solanum tuberosum HOM05D005467 ORTHO05D006523 2.6e-45 187.2 328 33.2
Lsat_1_v5_gn_3_86380 Lactuca sativa HOM05D005467 ORTHO05D006523 2.9e-44 183.7 123 74.0
Solyc02g038660.3 Solanum lycopersicum HOM05D005467 ORTHO05D006523 6.6e-41 172.6 327 33.9
Nitab4.5_0004524g0050 Nicotiana tabacum HOM05D005467 ORTHO05D006523 5.2e-38 162.9 120 61.7
RcHm_v2.0_Chr7g0235151 Rosa chinensis HOM05D005467 ORTHO05D006523 1.2e-37 161.8 104 75.0
Lsat_1_v5_gn_3_107041 Lactuca sativa HOM05D005467 ORTHO05D006523 5.8e-37 159.5 207 46.9
FAN17G1461 Fragaria x ananassa HOM05D005467 ORTHO05D006523 6.0e-34 149.4 111 64.9
Lsat_1_v5_gn_7_58700 Lactuca sativa HOM05D005467 ORTHO05D006523 7.8e-34 149.1 95 75.8
Lsat_1_v5_gn_4_96160 Lactuca sativa HOM05D005467 ORTHO05D006523 1.7e-33 147.9 95 74.7
PGSC0003DMG400023165 Solanum tuberosum HOM05D005467 ORTHO05D006523 2.3e-33 147.5 181 42.0
Nitab4.5_0004367g0150 Nicotiana tabacum HOM05D005467 ORTHO05D006523 8.6e-33 145.6 135 50.4
Nitab4.5_0002820g0080 Nicotiana tabacum HOM05D005467 ORTHO05D006523 4.0e-30 136.7 117 53.0
Nitab4.5_0019054g0020 Nicotiana tabacum HOM05D005467 ORTHO05D006523 5.8e-29 132.9 272 32.0
Nitab4.5_0002820g0070 Nicotiana tabacum HOM05D005467 ORTHO05D006523 2.1e-26 124.4 144 46.5
RcHm_v2.0_Chr3g0493761 Rosa chinensis HOM05D005467 ORTHO05D006523 2.1e-26 124.4 85 69.4
PGSC0003DMG400017876 Solanum tuberosum HOM05D005467 ORTHO05D006523 2.1e-26 124.4 206 35.4
Solyc02g038700.3 Solanum lycopersicum HOM05D005467 ORTHO05D006523 8.6e-25 119.0 218 31.2
Lsat_1_v5_gn_6_22900 Lactuca sativa HOM05D005467 ORTHO05D006523 8.1e-23 112.5 76 71.1
Phvul.008G137000 Phaseolus vulgaris HOM05D005467 ORTHO05D006523 8.9e-22 109.0 55 87.3
Nitab4.5_0000688g0010 Nicotiana tabacum HOM05D005467 ORTHO05D006523 5.8e-21 106.3 169 37.3
PGSC0003DMG400017875 Solanum tuberosum HOM05D005467 ORTHO05D006523 2.5e-16 90.9 77 49.4
CDE07G1108 Ceratophyllum demersum HOM05D005467 ORTHO05D006523 4.3e-16 90.1 80 53.8
PGSC0003DMG400038827 Solanum tuberosum HOM05D005467 ORTHO05D006523 2.1e-15 87.8 105 36.2
MD05G1282800 Malus domestica HOM05D005467 ORTHO05D006523 1.1e-08 65.5 170 30.6
CDE07G1559 Ceratophyllum demersum HOM05D005467 ORTHO05D006523 2.1e-07 61.2 53 52.8
SEGI_39271 Sequoiadendron giganteum HOM05D005467 ORTHO05D006523 2.1e-07 61.2 52 57.7
Cre12.g549600 Chlamydomonas reinhardtii HOM05D005467 ORTHO05D006523 1.8e-06 58.2 251 23.5
arahy.Tifrunner.gnm1.ann1.68D7VA Arachis hypogaea HOM05D007334 ORTHO05D011873 3.1e-06 57.4 57 50.9


User provided reference genes

Program Settings