Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0008718 Sechium edule HOM05D001194 ORTHO05D004786 0.0e+00 1144.0 611 100.0
CsaV3_7G034920 Cucumis sativus L. HOM05D001194 ORTHO05D004786 3.6e-221 771.9 637 71.7
ClCG09G000530 Citrullus lanatus HOM05D001194 ORTHO05D004786 1.2e-216 756.9 647 71.3
Sed0000220 Sechium edule HOM05D001194 ORTHO05D004786 1.2e-208 730.3 621 68.3
MELO3C024404.2 Cucumis melo HOM05D001194 ORTHO05D004786 2.3e-207 726.1 645 68.2
QL05p015783 Quercus lobata HOM05D001194 ORTHO05D004786 9.7e-126 454.9 603 52.2
Cfa003608 Carpinus fangiana HOM05D001194 ORTHO05D004786 1.5e-123 447.6 615 49.9
Haze_15917 Corylus avellana HOM05D001194 ORTHO05D004786 1.7e-122 444.1 615 50.1
CANSAT56G4545 Cannabis sativa HOM05D001194 ORTHO05D004786 5.2e-111 406.0 612 45.9
Cpa.g.sc131.28 Carica papaya HOM05D001194 ORTHO05D004786 1.0e-103 381.7 621 44.6
Thecc.06G107500 Theobroma cacao HOM05D001194 ORTHO05D004786 2.6e-102 377.1 619 43.8
Atru.chr1.3627 Acer truncatum HOM05D001194 ORTHO05D004786 3.4e-102 376.7 606 45.4
CiPaw.02G142200 Carya illinoinensis HOM05D001194 ORTHO05D004786 1.0e-98 365.2 594 44.6
CiPaw.01G227400 Carya illinoinensis HOM05D001194 ORTHO05D004786 8.6e-98 362.1 597 44.2
Manes.11G028900 Manihot esculenta HOM05D001194 ORTHO05D004786 1.9e-97 360.9 623 44.3
MD09G1196400 Malus domestica HOM05D001194 ORTHO05D004786 1.8e-95 354.4 586 45.4
ClCG07G013600 Citrullus lanatus HOM05D001194 ORTHO05D004786 3.4e-94 350.1 612 41.5
Glyma.08G196400 Glycine max HOM05D001194 ORTHO05D004786 7.5e-94 349.0 622 42.6
MD17G1177200 Malus domestica HOM05D001194 ORTHO05D004786 1.7e-93 347.8 582 44.8
Glyma.07G012700 Glycine max HOM05D001194 ORTHO05D004786 3.7e-93 346.7 617 43.3
COL.COLO4_30602 Corchorus olitorius HOM05D001194 ORTHO05D004786 5.4e-92 342.8 618 41.4
VMungo0331G0192 Vigna mungo HOM05D001194 ORTHO05D004786 1.2e-91 341.7 619 43.6
Duzib235G0513 Durio zibethinus HOM05D001194 ORTHO05D004786 7.8e-91 339.0 618 41.4
Dinv30401 Davidia involucrata HOM05D001194 ORTHO05D004786 1.3e-90 338.2 624 40.7
Duzib192G0939 Durio zibethinus HOM05D001194 ORTHO05D004786 1.3e-90 338.2 617 41.2
Gohir.A10G062200 Gossypium hirsutum HOM05D001194 ORTHO05D004786 4.0e-87 326.6 621 40.3
RcHm_v2.0_Chr2g0142441 Rosa chinensis HOM05D001194 ORTHO05D004786 4.0e-87 326.6 594 42.8
Phvul.010G142200 Phaseolus vulgaris HOM05D001194 ORTHO05D004786 5.2e-87 326.2 619 42.2
Psat4g194520 Pisum sativum HOM05D001194 ORTHO05D004786 1.5e-86 324.7 621 41.5
Prupe.3G052800 Prunus persica HOM05D001194 ORTHO05D004786 1.5e-86 324.7 552 42.8
Gohir.D10G063900 Gossypium hirsutum HOM05D001194 ORTHO05D004786 2.6e-86 323.9 616 40.1
Duzib160G0776 Durio zibethinus HOM05D001194 ORTHO05D004786 5.8e-86 322.8 603 41.6
Gorai.011G067800 Gossypium raimondii HOM05D001194 ORTHO05D004786 7.5e-86 322.4 625 40.2
Gohir.D05G135500 Gossypium hirsutum HOM05D001194 ORTHO05D004786 9.8e-86 322.0 622 41.2
Gohir.A05G133600 Gossypium hirsutum HOM05D001194 ORTHO05D004786 1.7e-85 321.2 622 41.2
Gorai.009G139300 Gossypium raimondii HOM05D001194 ORTHO05D004786 3.7e-85 320.1 620 41.1
Ca_23293_v3 Cicer arietinum L. HOM05D001194 ORTHO05D004786 1.9e-84 317.8 622 42.8
Ciclev10027499m.g Citrus clementina HOM05D001194 ORTHO05D004786 1.2e-83 315.1 609 41.5
FAN02G3247 Fragaria x ananassa HOM05D001194 ORTHO05D004786 7.8e-83 312.4 590 42.7
FvH4_6g32930 Fragaria vesca HOM05D001194 ORTHO05D004786 2.3e-82 310.8 592 42.6
FAN05G2170 Fragaria x ananassa HOM05D001194 ORTHO05D004786 2.3e-82 310.8 591 42.5
FAN14G3355 Fragaria x ananassa HOM05D001194 ORTHO05D004786 3.0e-82 310.5 592 42.9
TWI79G0629 Tripterygium wilfordii HOM05D001194 ORTHO05D004786 8.6e-82 308.9 622 40.7
Potri.003G045600 Populus trichocarpa HOM05D001194 ORTHO05D004786 7.3e-81 305.8 610 40.3
PGR102G2826 Punica granatum HOM05D001194 ORTHO05D004786 1.6e-80 304.7 612 40.7
FAN09G4892 Fragaria x ananassa HOM05D001194 ORTHO05D004786 1.8e-79 301.2 589 41.6
Lalb_Chr04g0263121 Lupinus albus HOM05D001194 ORTHO05D004786 4.0e-79 300.1 603 40.5
Potri.001G193900 Populus trichocarpa HOM05D001194 ORTHO05D004786 5.2e-79 299.7 615 40.3
Lj3g0009108 Lotus japonicus HOM05D001194 ORTHO05D004786 1.5e-78 298.1 623 41.7
Eucgr.F03102 Eucalyptus grandis HOM05D001194 ORTHO05D004786 2.0e-78 297.7 614 39.6
Medtr8g015580 Medicago truncatula HOM05D001194 ORTHO05D004786 3.4e-78 297.0 622 40.4
TWI75G1010 Tripterygium wilfordii HOM05D001194 ORTHO05D004786 9.8e-78 295.4 621 39.5
Rhsim08G0231000 Rhododendron simsii HOM05D001194 ORTHO05D004786 1.3e-77 295.0 625 39.5
Sed0001910 Sechium edule HOM05D001194 ORTHO05D004786 2.2e-77 294.3 598 38.5
Dinv37935 Davidia involucrata HOM05D001194 ORTHO05D004786 3.2e-76 290.4 607 38.9
CsaV3_3G044030 Cucumis sativus L. HOM05D001194 ORTHO05D004786 9.2e-76 288.9 596 38.3
Lalb_Chr22g0351691 Lupinus albus HOM05D001194 ORTHO05D004786 9.2e-76 288.9 614 39.9
Sabra03G0020700 Salix brachista HOM05D001194 ORTHO05D004786 1.2e-75 288.5 614 40.1
PGSC0003DMG400002598 Solanum tuberosum HOM05D001194 ORTHO05D004786 1.2e-75 288.5 614 37.9
Lalb_Chr25g0280541 Lupinus albus HOM05D001194 ORTHO05D004786 1.3e-74 285.0 603 39.0
MELO3C013030.2 Cucumis melo HOM05D001194 ORTHO05D004786 2.3e-74 284.3 589 38.7
arahy.Tifrunner.gnm1.ann1.86BA7N Arachis hypogaea HOM05D001194 ORTHO05D005909 3.9e-74 283.5 594 38.2
Sed0014756 Sechium edule HOM05D001194 ORTHO05D004786 6.6e-74 282.7 623 37.7
arahy.Tifrunner.gnm1.ann1.3FEZ81 Arachis hypogaea HOM05D001194 ORTHO05D005909 1.1e-73 282.0 594 37.9
Lj5A50T63 Lonicera japonica HOM05D001194 ORTHO05D004786 1.1e-73 282.0 604 38.7
TAR383G0892 Trochodendron aralioides HOM05D001194 ORTHO05D004786 1.1e-73 282.0 669 37.1
Sabra01G0135400 Salix brachista HOM05D001194 ORTHO05D004786 3.3e-73 280.4 613 39.3
vmacro18823 Vaccinium macrocarpon HOM05D001194 ORTHO05D004786 1.6e-72 278.1 619 38.1
Peaxi162Scf00038g01230 Petunia axillaris HOM05D001194 ORTHO05D004786 2.1e-72 277.7 617 37.3
Cc04_g02260 Coffea canephora HOM05D001194 ORTHO05D004786 1.8e-71 274.6 622 37.9
Nitab4.5_0004848g0070 Nicotiana tabacum HOM05D001194 ORTHO05D004786 4.0e-71 273.5 639 36.0
Nitab4.5_0006071g0040 Nicotiana tabacum HOM05D001194 ORTHO05D004786 3.7e-69 266.9 640 36.1
Hma1.2p1_0388F.1_g142150 Hydrangea macrophylla HOM05D001194 ORTHO05D004786 3.2e-68 263.8 596 37.9
Lj3g0001136 Lotus japonicus HOM05D001194 ORTHO05D005909 4.1e-68 263.5 615 38.0
Solyc03g121320.3 Solanum lycopersicum HOM05D001194 ORTHO05D004786 6.0e-67 259.6 616 36.0
Nn6g35405 Nelumbo nucifera HOM05D001194 ORTHO05D004786 1.7e-66 258.1 705 33.3
Oeu002522.1 Olea europaea HOM05D001194 ORTHO05D004786 1.7e-66 258.1 601 36.8
Sopen03g040130 Solanum pennellii HOM05D001194 ORTHO05D004786 6.6e-66 256.1 616 35.7
Actinidia09019 Actinidia chinensis HOM05D001194 ORTHO05D004786 1.2e-64 251.9 622 36.5
Actinidia32129 Actinidia chinensis HOM05D001194 ORTHO05D004786 5.8e-62 243.0 628 36.6
CAN.G1668.4 Capsicum annuum HOM05D001194 ORTHO05D004786 8.4e-61 239.2 622 33.4
Actinidia39123 Actinidia chinensis HOM05D001194 ORTHO05D004786 3.5e-59 233.8 612 35.8
SalBow6G0245 Salvia bowleyana HOM05D001194 ORTHO05D004786 2.3e-58 231.1 599 34.4
MSTRG.22608 Avicennia marina HOM05D001194 ORTHO05D004786 3.0e-58 230.7 619 34.1
MSTRG.11007 Avicennia marina HOM05D001194 ORTHO05D004786 1.5e-57 228.4 613 34.4
Gorai.006G096200 Gossypium raimondii HOM05D001194 ORTHO05D004786 1.5e-54 218.4 595 33.8
Aqoxy7G01308 Aquilegia oxysepala HOM05D001194 ORTHO05D004786 2.2e-53 214.5 608 33.4
Gohir.A09G080600 Gossypium hirsutum HOM05D001194 ORTHO05D004786 7.8e-51 206.1 578 33.7
Sp3g19340 Schrenkiella parvula HOM05D001194 ORTHO05D004786 2.5e-49 201.1 563 35.0
TPR.G8747 Trifolium pratense HOM05D001194 ORTHO05D004786 3.3e-49 200.7 658 34.8
Thhalv10020246m.g Eutrema salsugineum HOM05D001194 ORTHO05D004786 2.1e-48 198.0 583 34.0
THA.LOC104817938 Tarenaya hassleriana HOM05D001194 ORTHO05D004786 2.1e-48 198.0 610 33.1
Aa31LG8G8000 Aethionema arabicum HOM05D001194 ORTHO05D004786 4.5e-46 190.3 577 33.1
Gohir.D09G080600 Gossypium hirsutum HOM05D001194 ORTHO05D004786 4.5e-46 190.3 601 32.6
AL1G59690 Arabidopsis lyrata HOM05D001194 ORTHO05D004786 9.9e-46 189.1 591 32.3
AL3G35340 Arabidopsis lyrata HOM05D001194 ORTHO05D004786 1.7e-45 188.3 553 33.5
THA.LOC104810562 Tarenaya hassleriana HOM05D001194 ORTHO05D004786 4.9e-45 186.8 585 32.1
AT3G21295 Arabidopsis thaliana HOM05D001194 ORTHO05D004786 2.1e-43 181.4 540 32.8
Hund07662 Selenicereus undatus HOM05D001194 ORTHO05D004786 7.9e-43 179.5 589 31.9
Oeu039983.2 Olea europaea HOM05D001194 ORTHO05D004786 5.1e-42 176.8 587 31.5
BcaB06g26219 Brassica carinata HOM05D001194 ORTHO05D004786 2.5e-41 174.5 553 32.5
CARHR097200 Cardamine hirsuta HOM05D001194 ORTHO05D004786 9.0e-39 166.0 573 31.6
Carub.0001s4062 Capsella rubella HOM05D001194 ORTHO05D004786 2.0e-38 164.9 583 32.1
Carub.0003s2131 Capsella rubella HOM05D001194 ORTHO05D004786 3.4e-38 164.1 635 30.1
Aa31LG10G3060 Aethionema arabicum HOM05D001194 ORTHO05D004786 1.3e-37 162.2 593 32.4
AT1G51745 Arabidopsis thaliana HOM05D001194 ORTHO05D004786 1.7e-37 161.8 590 31.4
MBI04_g06218_MAGBIO Magnolia biondii HOM05D001194 ORTHO05D004786 4.9e-37 160.2 701 29.8
BcaC05g28183 Brassica carinata HOM05D001194 ORTHO05D004786 6.5e-37 159.8 558 31.4
CSS0009358 Camellia sinensis var. sinensis HOM05D001194 ORTHO05D004786 4.2e-36 157.1 373 37.3
Migut.I00996 Erythranthe guttata HOM05D001194 ORTHO05D004786 4.3e-33 147.1 604 30.3
Thhalv10011307m.g Eutrema salsugineum HOM05D001194 ORTHO05D004786 5.7e-33 146.7 596 30.4
BcaB02g11052 Brassica carinata HOM05D001194 ORTHO05D004786 7.4e-33 146.4 563 30.4
BraA06t23434Z Brassica rapa HOM05D004764 ORTHO05D005580 7.4e-33 146.4 572 31.3
EL10Ac9g21133 Beta vulgaris HOM05D001194 ORTHO05D004786 1.6e-32 145.2 618 30.6
AUR62034305 Chenopodium quinoa HOM05D001194 ORTHO05D004786 2.8e-32 144.4 597 30.8
Ah.01g016980 Amaranthus hybridus HOM05D001194 ORTHO05D004786 6.2e-32 143.3 597 30.2
BcaC08g43344 Brassica carinata HOM05D004764 ORTHO05D005580 6.2e-32 143.3 576 30.6
BolC6t35797H Brassica oleracea HOM05D004764 ORTHO05D005580 6.2e-32 143.3 580 30.7
Lsat_1_v5_gn_1_36500 Lactuca sativa HOM05D001194 ORTHO05D004786 6.2e-32 143.3 543 31.5
C06p07040 Brassica napus HOM05D004764 ORTHO05D005580 8.2e-32 142.9 584 31.2
AUR62022395 Chenopodium quinoa HOM05D001194 ORTHO05D004786 1.8e-31 141.7 593 31.9
DCAR_016175 Daucus carota HOM05D001194 ORTHO05D004786 2.4e-31 141.4 565 29.4
CSS0039198 Camellia sinensis var. sinensis HOM05D001194 ORTHO05D004786 4.0e-31 140.6 222 44.6
BolC5t32951H Brassica oleracea HOM05D001194 ORTHO05D004786 2.0e-30 138.3 578 31.3
Sc12g0009910 Simmondsia chinensis HOM05D001194 ORTHO05D004786 2.0e-30 138.3 581 30.3
C05p42230 Brassica napus HOM05D001194 ORTHO05D004786 2.6e-30 137.9 578 31.3
A06p02240 Brassica napus HOM05D004764 ORTHO05D005580 7.6e-30 136.3 567 30.7
TAR626G0784 Trochodendron aralioides HOM05D001194 ORTHO05D004786 1.1e-28 132.5 308 38.0
CARHR041900 Cardamine hirsuta HOM05D001194 ORTHO05D004786 3.2e-28 131.0 322 36.0
SHI11176 Sapria himalayana HOM05D001194 ORTHO05D004786 3.2e-28 131.0 578 29.9
Lalb_Chr14g0372901 Lupinus albus HOM05D001194 ORTHO05D004786 1.6e-27 128.6 309 35.9
PSO832G0553 Papaver somniferum HOM05D001194 ORTHO05D004786 1.6e-27 128.6 612 29.2
BcaB07g33630 Brassica carinata HOM05D004764 ORTHO05D005580 2.7e-27 127.9 580 29.0
GSVIVG01016894001 Vitis vinifera HOM05D001194 ORTHO05D004786 2.7e-27 127.9 371 31.5
Sp1g38400 Schrenkiella parvula HOM05D001194 ORTHO05D004786 7.9e-27 126.3 590 28.3
PSO063G1381 Papaver somniferum HOM05D001194 ORTHO05D004786 1.1e-25 122.5 604 29.0
ATR0789G175 Amborella trichopoda HOM05D001194 ORTHO05D004786 7.4e-25 119.8 588 27.9
Lalb_Chr14g0372891 Lupinus albus HOM05D001194 ORTHO05D004786 2.2e-24 118.2 232 42.2
ECA247G2821 Erigeron canadensis HOM05D001194 ORTHO05D004786 4.1e-23 114.0 566 27.6
BcaC08g43937 Brassica carinata HOM05D001194 ORTHO05D004786 1.7e-21 108.6 540 28.1
BraA05t20842Z Brassica rapa HOM05D001194 ORTHO05D004786 2.2e-21 108.2 532 27.8
A05p27320 Brassica napus HOM05D001194 ORTHO05D004786 2.9e-21 107.8 581 28.6
Thecc.02G171200 Theobroma cacao HOM05D001194 ORTHO05D004786 5.0e-21 107.1 258 36.0
unitig_85.g27208 Utricularia gibba HOM05D001194 ORTHO05D004786 6.5e-21 106.7 540 29.1
C06p13300 Brassica napus HOM05D001194 ORTHO05D005580 1.2e-19 102.4 540 27.6
BolC6t36490H Brassica oleracea HOM05D001194 ORTHO05D000015 2.1e-19 101.7 540 27.4
Hma1.2p1_0291F.1_g115460 Hydrangea macrophylla HOM05D001194 ORTHO05D004786 2.1e-19 101.7 231 39.4
SGA_v2.0_scaffold71G23755 Striga asiatica HOM05D001194 ORTHO05D004786 1.8e-18 98.6 550 27.8
A05p19380 Brassica napus HOM05D001194 ORTHO05D004786 3.0e-18 97.8 560 27.0
Migut.D00980 Erythranthe guttata HOM05D001194 ORTHO05D004786 2.0e-17 95.1 484 28.9
SGA_v2.0_scaffold45G16989 Striga asiatica HOM05D001194 ORTHO05D002622 9.7e-17 92.8 561 27.6
HanXRQChr04g0095981 Helianthus annuus HOM05D001194 ORTHO05D004786 3.1e-15 87.8 453 27.6
Psat7g152400 Pisum sativum HOM05D001194 ORTHO05D004786 1.0e-13 82.8 259 32.8
Lj3C889T18 Lonicera japonica HOM05D001194 ORTHO05D004506 1.4e-12 79.0 587 25.4
Os01g0558500 Oryza sativa ssp. japonica HOM05D001194 ORTHO05D004786 5.5e-12 77.0 597 25.8
Zm00001eb162250 Zea mays HOM05D001194 ORTHO05D004786 1.2e-11 75.9 570 22.8
SEGI_14816 Sequoiadendron giganteum HOM05D001194 ORTHO05D004786 1.6e-11 75.5 779 24.4
MSTRG.4759 Avicennia marina HOM05D001194 ORTHO05D004786 6.7e-10 70.1 244 32.0
HanXRQChr02g0031511 Helianthus annuus HOM05D001194 ORTHO05D004786 2.0e-09 68.6 282 28.4
PGSC0003DMG400000539 Solanum tuberosum HOM05D001194 ORTHO05D004506 3.7e-08 64.3 656 22.9
Sopen03g027630 Solanum pennellii HOM05D001194 ORTHO05D004506 6.3e-08 63.5 645 22.8
Oeu026531.1 Olea europaea HOM05D001194 ORTHO05D025959 1.8e-07 62.0 93 32.3
PSO063G0908 Papaver somniferum HOM05D001194 ORTHO05D004506 9.1e-07 59.7 515 26.4
SGA_v2.0_scaffold4G02036 Striga asiatica HOM05D001194 ORTHO05D004786 1.2e-06 59.3 200 32.5
Oeu023784.1 Olea europaea HOM05D001194 ORTHO05D025959 1.5e-06 58.9 82 37.8
Oeu023782.1 Olea europaea HOM05D001194 ORTHO05D025959 2.6e-06 58.2 68 42.6
TWI32G1253 Tripterygium wilfordii HOM05D001194 ORTHO05D004506 4.5e-06 57.4 201 28.4


User provided reference genes

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