Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0008662 Sechium edule HOM05D003201 ORTHO05D008805 3.9e-139 498.0 240 100.0
ClCG01G015060 Citrullus lanatus HOM05D003201 ORTHO05D008805 5.0e-102 374.8 253 75.1
MELO3C024592.2 Cucumis melo HOM05D003201 ORTHO05D008805 2.3e-99 365.9 255 72.9
CsaV3_6G041170 Cucumis sativus L. HOM05D003201 ORTHO05D008805 6.3e-97 357.8 255 72.2
Gohir.A09G117900 Gossypium hirsutum HOM05D003201 ORTHO05D008805 3.4e-74 282.3 260 56.2
Gohir.D09G114700 Gossypium hirsutum HOM05D003201 ORTHO05D008805 5.8e-74 281.6 256 56.2
Medtr6g059320 Medicago truncatula HOM05D003201 ORTHO05D008805 5.4e-72 275.0 257 55.6
Phvul.004G131600 Phaseolus vulgaris HOM05D003201 ORTHO05D008805 1.2e-71 273.9 258 54.7
VMungo0464G1483 Vigna mungo HOM05D003201 ORTHO05D008805 6.0e-71 271.6 258 55.0
PGR119G1272 Punica granatum HOM05D003201 ORTHO05D008805 1.0e-70 270.8 236 58.9
Psat1g112800 Pisum sativum HOM05D003201 ORTHO05D008805 1.7e-70 270.0 254 55.9
TPR.G5800 Trifolium pratense HOM05D003201 ORTHO05D008805 1.7e-70 270.0 257 55.6
Glyma.16G207100 Glycine max HOM05D003201 ORTHO05D008805 5.1e-70 268.5 262 54.2
Lj2g0011105 Lotus japonicus HOM05D003201 ORTHO05D008805 5.1e-70 268.5 263 53.2
QL04p043008 Quercus lobata HOM05D003201 ORTHO05D008805 6.6e-70 268.1 264 54.9
GSVIVG01034815001 Vitis vinifera HOM05D003201 ORTHO05D008805 6.6e-70 268.1 261 55.2
Prupe.6G000300 Prunus persica HOM05D003201 ORTHO05D008805 3.3e-69 265.8 265 52.8
Thecc.05G124600 Theobroma cacao HOM05D003201 ORTHO05D008805 4.3e-69 265.4 260 55.0
CANSAT35G1729 Cannabis sativa HOM05D003201 ORTHO05D008805 5.6e-69 265.0 245 57.6
Lalb_Chr01g0008671 Lupinus albus HOM05D003201 ORTHO05D008805 9.5e-69 264.2 262 53.8
Glyma.09G156400 Glycine max HOM05D003201 ORTHO05D008805 1.2e-68 263.8 262 53.8
Cfa002302 Carpinus fangiana HOM05D003201 ORTHO05D008805 1.6e-68 263.5 252 56.3
FvH4_3g46100 Fragaria vesca HOM05D003201 ORTHO05D008805 4.7e-68 261.9 265 54.3
PSO339G6265 Papaver somniferum HOM05D003201 ORTHO05D008805 6.2e-68 261.5 265 53.6
CSS0031904 Camellia sinensis var. sinensis HOM05D003201 ORTHO05D008805 1.1e-67 260.8 264 53.8
Dinv15525 Davidia involucrata HOM05D003201 ORTHO05D008805 1.4e-67 260.4 265 53.2
Aqoxy5G03624 Aquilegia oxysepala HOM05D003201 ORTHO05D008805 1.8e-67 260.0 258 53.1
C01p14340 Brassica napus HOM05D003201 ORTHO05D008914 2.3e-67 259.6 245 56.3
Aa31LG6G2740 Aethionema arabicum HOM05D003201 ORTHO05D008914 4.0e-67 258.8 254 53.9
A01p12040 Brassica napus HOM05D003201 ORTHO05D008914 6.8e-67 258.1 245 56.7
ECA248G3933 Erigeron canadensis HOM05D003201 ORTHO05D008805 6.8e-67 258.1 250 55.6
TAR623G0449 Trochodendron aralioides HOM05D003201 ORTHO05D008805 8.9e-67 257.7 264 53.0
PSO384G0221 Papaver somniferum HOM05D003201 ORTHO05D008805 1.2e-66 257.3 263 52.9
Sabra13G0129200 Salix brachista HOM05D003201 ORTHO05D008805 1.5e-66 256.9 259 54.1
RcHm_v2.0_Chr5g0084171 Rosa chinensis HOM05D003201 ORTHO05D008805 4.4e-66 255.4 265 52.8
Thhalv10026088m.g Eutrema salsugineum HOM05D003201 ORTHO05D008805 9.9e-66 254.2 246 54.9
MD11G1000200 Malus domestica HOM05D003201 ORTHO05D008805 2.9e-65 252.7 269 52.4
MBI13_g39202_MAGBIO Magnolia biondii HOM05D003201 ORTHO05D008805 3.8e-65 252.3 270 51.1
Sp7g18690 Schrenkiella parvula HOM05D003201 ORTHO05D008805 3.8e-65 252.3 246 54.5
Hma1.2p1_1133F.1_g260360 Hydrangea macrophylla HOM05D003201 ORTHO05D008805 4.9e-65 251.9 262 52.3
Hma1.2p1_1133F.1_g260370 Hydrangea macrophylla HOM05D003201 ORTHO05D008805 4.9e-65 251.9 262 52.3
Actinidia16221 Actinidia chinensis HOM05D003201 ORTHO05D008805 6.4e-65 251.5 264 50.8
Potri.013G161600 Populus trichocarpa HOM05D003201 ORTHO05D008805 6.4e-65 251.5 258 52.7
THA.LOC104806236 Tarenaya hassleriana HOM05D003201 ORTHO05D008805 6.4e-65 251.5 256 52.0
BraA01t01146Z Brassica rapa HOM05D003201 ORTHO05D008914 1.1e-64 250.8 245 54.3
ATR0068G091 Amborella trichopoda HOM05D003201 ORTHO05D008805 3.2e-64 249.2 252 52.4
Carub.0007s2082 Capsella rubella HOM05D003201 ORTHO05D008805 1.2e-63 247.3 246 54.1
HanXRQChr17g0555621 Helianthus annuus HOM05D003201 ORTHO05D008805 1.6e-63 246.9 253 53.0
DCAR_028397 Daucus carota HOM05D003201 ORTHO05D008805 2.1e-63 246.5 256 51.2
AL7G33540 Arabidopsis lyrata HOM05D003201 ORTHO05D008805 6.0e-63 245.0 252 53.2
BolC1t01393H Brassica oleracea HOM05D000280 ORTHO05D004510 7.8e-63 244.6 248 53.2
TWI34G1882 Tripterygium wilfordii HOM05D003201 ORTHO05D008805 1.0e-62 244.2 253 51.0
CAN.G431.2 Capsicum annuum HOM05D003201 ORTHO05D008805 5.1e-62 241.9 260 50.0
Sopen01g022430 Solanum pennellii HOM05D003201 ORTHO05D008805 1.5e-61 240.4 261 51.0
arahy.Tifrunner.gnm1.ann1.75P5EB Arachis hypogaea HOM05D003201 ORTHO05D008805 1.9e-61 240.0 211 59.2
AUR62000916 Chenopodium quinoa HOM05D003201 ORTHO05D008805 5.6e-61 238.4 258 50.4
Solyc01g057570.3 Solanum lycopersicum HOM05D003201 ORTHO05D008805 9.6e-61 237.7 261 49.8
CARHR227170 Cardamine hirsuta HOM05D003201 ORTHO05D008805 1.6e-60 236.9 251 51.8
CDE02G2127 Ceratophyllum demersum HOM05D003201 ORTHO05D008805 2.8e-60 236.1 269 48.3
Peaxi162Scf01181g00210 Petunia axillaris HOM05D003201 ORTHO05D008805 6.2e-60 235.0 265 49.8
MSTRG.12815 Avicennia marina HOM05D003201 ORTHO05D008805 1.4e-59 233.8 253 51.4
Lsat_1_v5_gn_1_71340 Lactuca sativa HOM05D003201 ORTHO05D008805 1.8e-59 233.4 209 59.3
arahy.Tifrunner.gnm1.ann1.F1EX5J Arachis hypogaea HOM05D003201 ORTHO05D008805 4.0e-59 232.3 231 54.5
Cc01_g05060 Coffea canephora HOM05D003201 ORTHO05D008805 5.2e-59 231.9 264 48.9
BcaC09g51346 Brassica carinata HOM05D003201 ORTHO05D008805 6.9e-59 231.5 214 56.1
Migut.N00525 Erythranthe guttata HOM05D003201 ORTHO05D008805 8.9e-59 231.1 257 49.8
Zm00001eb047810 Zea mays HOM05D003201 ORTHO05D008805 3.4e-58 229.2 276 47.5
SEGI_31075 Sequoiadendron giganteum HOM05D003201 ORTHO05D008805 9.9e-58 227.6 279 46.6
Pp3c2_18510 Physcomitrium patens HOM05D003201 ORTHO05D008805 1.7e-57 226.9 254 46.5
Gorai.006G132500 Gossypium raimondii HOM05D003201 ORTHO05D008805 3.8e-57 225.7 190 60.0
HPP92_021155 Vanilla planifolia HOM05D003201 ORTHO05D008805 8.4e-57 224.6 256 48.0
Eucgr.J01718 Eucalyptus grandis HOM05D003201 ORTHO05D008805 1.4e-56 223.8 224 52.7
vmacro04280 Vaccinium macrocarpon HOM05D003201 ORTHO05D008805 1.4e-56 223.8 279 46.6
CiPaw.03G255400 Carya illinoinensis HOM05D003201 ORTHO05D008805 1.9e-56 223.4 222 55.9
EL10Ac4g09260 Beta vulgaris HOM05D003201 ORTHO05D008805 2.1e-55 219.9 300 45.3
unitig_0.g1143 Utricularia gibba HOM05D003201 ORTHO05D008805 2.1e-55 219.9 245 49.0
Atru.chr2.209 Acer truncatum HOM05D003201 ORTHO05D008805 4.6e-55 218.8 191 58.1
Sopen01g019970 Solanum pennellii HOM05D003201 ORTHO05D008805 4.6e-55 218.8 261 47.9
Sc18g0002730 Simmondsia chinensis HOM05D003201 ORTHO05D008805 2.3e-54 216.5 201 55.2
SGA_v2.0_scaffold6G03334 Striga asiatica HOM05D003201 ORTHO05D008805 1.1e-53 214.2 274 45.3
Haze_24508 Corylus avellana HOM05D003201 ORTHO05D008805 9.6e-53 211.1 194 58.2
Mapoly0007s0017 Marchantia polymorpha HOM05D003201 ORTHO05D008805 9.6e-53 211.1 256 45.3
Ciclev10029320m.g Citrus clementina HOM05D003201 ORTHO05D008805 4.0e-51 205.7 184 56.5
FAN11G2508 Fragaria x ananassa HOM05D003201 ORTHO05D008805 3.8e-49 199.1 196 56.1
Os10g0420000 Oryza sativa ssp. japonica HOM05D003201 ORTHO05D008805 3.8e-49 199.1 260 45.4
SMO147G0005 Selaginella moellendorffii HOM05D003201 ORTHO05D008805 9.3e-48 194.5 250 44.4
Manes.18G121700 Manihot esculenta HOM05D003201 ORTHO05D008805 2.7e-47 193.0 190 54.2
SMO132G0004 Selaginella moellendorffii HOM05D003201 ORTHO05D008805 3.5e-47 192.6 262 42.0
FAN16G0934 Fragaria x ananassa HOM05D000104 ORTHO05D004363 7.9e-47 191.4 241 48.1
FAN25G0659 Fragaria x ananassa HOM05D003201 ORTHO05D008805 9.6e-45 184.5 217 52.1
Duzib093G2193 Durio zibethinus HOM05D003201 ORTHO05D008805 1.3e-44 184.1 245 43.7
AT4G20350 Arabidopsis thaliana HOM05D003201 ORTHO05D008805 8.1e-44 181.4 182 53.8
Cpa.g.sc30.50 Carica papaya HOM05D003201 ORTHO05D008805 4.0e-43 179.1 182 52.2
SalBow3G4219 Salvia bowleyana HOM05D003201 ORTHO05D008805 1.3e-41 174.1 163 55.8
AUR62005054 Chenopodium quinoa HOM05D003201 ORTHO05D008805 2.2e-41 173.3 185 52.4
Nitab4.5_0000075g0050 Nicotiana tabacum HOM05D003201 ORTHO05D008805 2.9e-41 172.9 266 41.4
MBI13_g36948_MAGBIO Magnolia biondii HOM05D003201 ORTHO05D008805 9.3e-40 167.9 176 50.6
AUR62004843 Chenopodium quinoa HOM05D003201 ORTHO05D008805 3.3e-37 159.5 141 57.4
Ca_25246_v3 Cicer arietinum L. HOM05D003201 ORTHO05D008805 3.4e-34 149.4 151 55.6
COL.COLO4_24749 Corchorus olitorius HOM05D003201 ORTHO05D008805 2.5e-32 143.3 245 37.6
Rhsim13G0235500 Rhododendron simsii HOM05D003201 ORTHO05D008805 7.9e-31 138.3 287 35.5
Hund07019 Selenicereus undatus HOM05D003201 ORTHO05D008805 1.0e-30 137.9 152 53.9
FAN21G2623 Fragaria x ananassa HOM05D003201 ORTHO05D008805 3.3e-29 132.9 159 50.3
PGSC0003DMG400026601 Solanum tuberosum HOM05D003201 ORTHO05D008805 2.8e-28 129.8 155 49.0
Nitab4.5_0005125g0010 Nicotiana tabacum HOM05D003201 ORTHO05D008805 6.3e-28 128.6 152 48.7
Lj1A555G38 Lonicera japonica HOM05D003201 ORTHO05D008805 3.8e-25 119.4 163 46.6
CBR_g45550 Chara braunii HOM05D000019 ORTHO05D000353 7.4e-21 105.1 107 44.9
MCO03G055 Micromonas commoda HOM05D003201 ORTHO05D008805 1.1e-19 101.3 192 36.5
FAN25G1903 Fragaria x ananassa HOM05D003201 ORTHO05D008805 1.4e-14 84.3 56 69.6
FAN11G4037 Fragaria x ananassa HOM05D003201 ORTHO05D008805 3.0e-14 83.2 56 69.6
Cfa026017 Carpinus fangiana HOM05D003201 ORTHO05D124792 8.8e-14 81.6 217 29.5
Cre14.g632791 Chlamydomonas reinhardtii HOM05D003201 ORTHO05D008805 1.5e-13 80.9 179 30.2
MCO08G131 Micromonas commoda HOM05D003201 ORTHO05D008805 3.7e-12 76.3 196 32.7
PRCOL_00004726 Prasinoderma coloniale HOM05D003201 ORTHO05D008805 3.2e-08 63.2 149 30.2


User provided reference genes

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