Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0008655 Sechium edule HOM05D004846 ORTHO05D005630 0.0e+00 2204.1 1106 100.0
ClCG05G017040 Citrullus lanatus HOM05D004846 ORTHO05D005630 0.0e+00 1947.6 1172 83.2
CsaV3_3G046520 Cucumis sativus L. HOM05D004846 ORTHO05D005630 0.0e+00 1945.6 1105 87.1
Sed0014062 Sechium edule HOM05D004846 ORTHO05D005630 0.0e+00 1839.3 1106 83.7
MELO3C003688.2 Cucumis melo HOM05D004846 ORTHO05D005630 0.0e+00 1712.2 1009 85.3
QL02p072992 Quercus lobata HOM05D004846 ORTHO05D005630 0.0e+00 1548.5 1122 68.7
Dinv25698 Davidia involucrata HOM05D004846 ORTHO05D005630 0.0e+00 1545.4 1106 69.0
Potri.001G338000 Populus trichocarpa HOM05D004846 ORTHO05D005630 0.0e+00 1528.8 1118 67.8
Cfa007283 Carpinus fangiana HOM05D004846 ORTHO05D005630 0.0e+00 1526.9 1129 67.9
CANSAT64G0871 Cannabis sativa HOM05D004846 ORTHO05D005630 0.0e+00 1524.6 1109 67.8
GSVIVG01027213001 Vitis vinifera HOM05D004846 ORTHO05D005630 0.0e+00 1517.3 1128 68.2
TAR371G0224 Trochodendron aralioides HOM05D004846 ORTHO05D005630 0.0e+00 1493.8 1117 67.1
Prupe.3G299200 Prunus persica HOM05D004846 ORTHO05D005630 0.0e+00 1487.2 1117 66.6
CSS0030635 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 0.0e+00 1468.4 1118 65.2
Sabra16G0218700 Salix brachista HOM05D004846 ORTHO05D005630 0.0e+00 1466.8 1177 63.4
TWI15G0720 Tripterygium wilfordii HOM05D004846 ORTHO05D005630 0.0e+00 1465.7 1118 66.5
Ciclev10014098m.g Citrus clementina HOM05D004846 ORTHO05D005630 0.0e+00 1459.1 1117 65.6
Actinidia05946 Actinidia chinensis HOM05D004846 ORTHO05D005630 0.0e+00 1458.7 1117 65.0
Atru.chr6.2483 Acer truncatum HOM05D004846 ORTHO05D005630 0.0e+00 1453.0 1117 65.7
Glyma.19G082100 Glycine max HOM05D004846 ORTHO05D005630 0.0e+00 1450.6 1117 64.0
MD09G1017700 Malus domestica HOM05D004846 ORTHO05D005630 0.0e+00 1442.9 1122 65.2
MD17G1018500 Malus domestica HOM05D004846 ORTHO05D005630 0.0e+00 1440.2 1109 65.3
Thecc.04G024900 Theobroma cacao HOM05D004846 ORTHO05D005630 0.0e+00 1435.6 1118 65.5
Medtr7g037280 Medicago truncatula HOM05D004846 ORTHO05D005630 0.0e+00 1434.9 1120 63.4
Lj1g0007607 Lotus japonicus HOM05D004846 ORTHO05D005630 0.0e+00 1425.6 1119 63.6
VMungo1127G0826 Vigna mungo HOM05D004846 ORTHO05D005630 0.0e+00 1425.6 1127 62.8
FvH4_6g52480 Fragaria vesca HOM05D004846 ORTHO05D005630 0.0e+00 1425.2 1116 64.1
Lalb_Chr24g0403411 Lupinus albus HOM05D004846 ORTHO05D005630 0.0e+00 1425.2 1106 64.5
FAN02G3962 Fragaria x ananassa HOM05D004846 ORTHO05D005630 0.0e+00 1424.8 1116 64.2
FAN14G2722 Fragaria x ananassa HOM05D004846 ORTHO05D005630 0.0e+00 1418.7 1116 63.8
FAN05G3122 Fragaria x ananassa HOM05D004846 ORTHO05D005630 0.0e+00 1416.4 1126 63.4
RcHm_v2.0_Chr2g0174121 Rosa chinensis HOM05D004846 ORTHO05D005630 0.0e+00 1415.2 1116 63.8
Gorai.011G093300 Gossypium raimondii HOM05D004846 ORTHO05D005630 0.0e+00 1413.3 1107 65.4
Gohir.D10G085400 Gossypium hirsutum HOM05D004846 ORTHO05D005630 0.0e+00 1411.7 1107 65.3
Rhsim10G0011500 Rhododendron simsii HOM05D004846 ORTHO05D005630 0.0e+00 1405.6 1151 63.0
FAN09G4064 Fragaria x ananassa HOM05D004846 ORTHO05D005630 0.0e+00 1403.3 1116 63.2
Oeu062399.1 Olea europaea HOM05D004846 ORTHO05D005630 0.0e+00 1402.1 1130 62.5
PGR083G2372 Punica granatum HOM05D004846 ORTHO05D005630 0.0e+00 1399.8 1113 63.4
MBI15_g38527_MAGBIO Magnolia biondii HOM05D004846 ORTHO05D005630 0.0e+00 1397.5 1152 62.0
Cc07_g00370 Coffea canephora HOM05D004846 ORTHO05D005630 0.0e+00 1394.0 1115 62.9
Migut.H00055 Erythranthe guttata HOM05D004846 ORTHO05D005630 0.0e+00 1392.5 1113 62.7
Solyc02g093770.3 Solanum lycopersicum HOM05D004846 ORTHO05D005630 0.0e+00 1389.0 1118 63.6
Sopen02g038410 Solanum pennellii HOM05D004846 ORTHO05D005630 0.0e+00 1386.7 1118 63.5
Duzib187G0011 Durio zibethinus HOM05D004846 ORTHO05D005630 0.0e+00 1379.4 1073 66.1
Eucgr.J02281 Eucalyptus grandis HOM05D004846 ORTHO05D005630 0.0e+00 1377.8 1117 62.6
Sc09g0010530 Simmondsia chinensis HOM05D004846 ORTHO05D005630 0.0e+00 1376.7 1120 62.3
Nitab4.5_0001863g0210 Nicotiana tabacum HOM05D004846 ORTHO05D005630 0.0e+00 1376.3 1116 62.2
Haze_14810 Corylus avellana HOM05D004846 ORTHO05D005630 0.0e+00 1374.8 1172 61.9
arahy.Tifrunner.gnm1.ann1.QFX8QT Arachis hypogaea HOM05D004846 ORTHO05D005630 0.0e+00 1364.7 1123 60.9
arahy.Tifrunner.gnm1.ann1.EI4BFE Arachis hypogaea HOM05D004846 ORTHO05D005630 0.0e+00 1364.4 1123 61.0
TPR.G9064 Trifolium pratense HOM05D004846 ORTHO05D005630 0.0e+00 1357.8 1136 60.6
vmacro05920 Vaccinium macrocarpon HOM05D004846 ORTHO05D005630 0.0e+00 1356.7 1121 61.6
CAN.G473.55 Capsicum annuum HOM05D004846 ORTHO05D005630 0.0e+00 1355.5 1111 61.9
PSO210G2938 Papaver somniferum HOM05D004846 ORTHO05D005630 0.0e+00 1354.7 1116 60.3
HanXRQChr02g0054051 Helianthus annuus HOM05D004846 ORTHO05D005630 0.0e+00 1352.4 1113 63.2
ECA233G5463 Erigeron canadensis HOM05D004846 ORTHO05D005630 0.0e+00 1351.7 1109 61.8
Lsat_1_v5_gn_5_21981 Lactuca sativa HOM05D004846 ORTHO05D005630 0.0e+00 1350.5 1115 61.6
HanXRQChr07g0193151 Helianthus annuus HOM05D004846 ORTHO05D005630 0.0e+00 1348.2 1111 62.6
THA.LOC104805347 Tarenaya hassleriana HOM05D004846 ORTHO05D005630 0.0e+00 1347.8 1113 61.7
Cpa.g.sc130.45 Carica papaya HOM05D004846 ORTHO05D005630 0.0e+00 1347.4 1135 61.8
Hund19592 Selenicereus undatus HOM05D004846 ORTHO05D005630 0.0e+00 1346.3 1115 60.9
PSO210G2073 Papaver somniferum HOM05D004846 ORTHO05D005630 0.0e+00 1341.3 1117 60.2
MSTRG.24063 Avicennia marina HOM05D004846 ORTHO05D005630 0.0e+00 1336.2 1118 60.5
AUR62031596 Chenopodium quinoa HOM05D004846 ORTHO05D005630 0.0e+00 1313.9 1119 59.3
Dinv00597 Davidia involucrata HOM05D004846 ORTHO05D005630 0.0e+00 1309.7 940 68.9
Lj3C906G17 Lonicera japonica HOM05D004846 ORTHO05D005630 0.0e+00 1309.7 1116 61.2
ATR0751G144 Amborella trichopoda HOM05D004846 ORTHO05D005630 0.0e+00 1308.1 1200 56.4
BcaC06g33832 Brassica carinata HOM05D004846 ORTHO05D005630 0.0e+00 1302.3 1106 61.4
CiPaw.03G050100 Carya illinoinensis HOM05D004846 ORTHO05D005630 0.0e+00 1302.3 957 68.1
BolC7t44153H Brassica oleracea HOM05D004846 ORTHO05D005630 0.0e+00 1302.0 1115 61.1
AUR62012470 Chenopodium quinoa HOM05D004846 ORTHO05D005630 0.0e+00 1302.0 1136 58.4
EL10Ac2g04126 Beta vulgaris HOM05D004846 ORTHO05D005630 0.0e+00 1301.6 1179 56.5
Ah.10g035510 Amaranthus hybridus HOM05D004846 ORTHO05D005630 0.0e+00 1301.2 1113 59.8
C07p36370 Brassica napus HOM05D004846 ORTHO05D005630 0.0e+00 1299.6 1111 61.5
A06p41290 Brassica napus HOM05D004846 ORTHO05D005630 0.0e+00 1295.8 1117 60.8
BraA06t27054Z Brassica rapa HOM05D004846 ORTHO05D005630 0.0e+00 1295.8 1117 60.8
Carub.0005s0560 Capsella rubella HOM05D004846 ORTHO05D005630 0.0e+00 1291.2 1105 60.5
BcaC06g31008 Brassica carinata HOM05D004846 ORTHO05D005630 0.0e+00 1287.3 1108 60.9
Gohir.D09G032800 Gossypium hirsutum HOM05D004846 ORTHO05D005630 0.0e+00 1286.6 1108 60.3
Thhalv10003555m.g Eutrema salsugineum HOM05D004846 ORTHO05D005630 0.0e+00 1285.4 1107 60.3
Gorai.006G037800 Gossypium raimondii HOM05D004846 ORTHO05D005630 0.0e+00 1285.0 1108 60.2
Sp2g16490 Schrenkiella parvula HOM05D004846 ORTHO05D005630 0.0e+00 1285.0 1105 59.7
AT3G27325 Arabidopsis thaliana HOM05D004846 ORTHO05D005630 0.0e+00 1277.3 1103 60.2
DCAR_013672 Daucus carota HOM05D004846 ORTHO05D005630 0.0e+00 1274.6 1112 58.5
Peaxi162Scf00420g00255 Petunia axillaris HOM05D004846 ORTHO05D005630 0.0e+00 1273.1 1097 59.9
Gohir.A09G032800 Gossypium hirsutum HOM05D004846 ORTHO05D005630 0.0e+00 1272.3 1108 59.7
Manes.15G092600 Manihot esculenta HOM05D004846 ORTHO05D005630 0.0e+00 1268.8 956 66.9
AL5G16590 Arabidopsis lyrata HOM05D004846 ORTHO05D005630 0.0e+00 1266.9 1106 59.7
C02p54070 Brassica napus HOM05D004846 ORTHO05D005630 0.0e+00 1257.7 1108 59.5
BolC2t11469H Brassica oleracea HOM05D004846 ORTHO05D005630 0.0e+00 1255.0 1110 59.4
SGA_v2.0_scaffold66G22277 Striga asiatica HOM05D004846 ORTHO05D005630 0.0e+00 1251.1 1178 56.5
A02p35330 Brassica napus HOM05D004846 ORTHO05D005630 0.0e+00 1242.3 1112 58.6
COL.COLO4_29272 Corchorus olitorius HOM05D004846 ORTHO05D005630 0.0e+00 1236.9 995 64.7
CARHR040910 Cardamine hirsuta HOM05D004846 ORTHO05D005630 0.0e+00 1234.6 1104 58.3
BraA02t08536Z Brassica rapa HOM05D004846 ORTHO05D005630 0.0e+00 1232.2 1121 57.9
Aa31LG2G5360 Aethionema arabicum HOM05D004846 ORTHO05D005630 0.0e+00 1228.8 1135 57.8
Os09g0266400 Oryza sativa ssp. japonica HOM05D004846 ORTHO05D005630 0.0e+00 1214.9 1104 56.5
SalBow2G2965 Salvia bowleyana HOM05D004846 ORTHO05D005630 0.0e+00 1199.1 1152 55.8
SGA_v2.0_scaffold135G34938 Striga asiatica HOM05D004846 ORTHO05D005630 0.0e+00 1198.3 994 61.8
Psat3g169160 Pisum sativum HOM05D004846 ORTHO05D005630 0.0e+00 1186.4 841 68.5
Phvul.008G148206 Phaseolus vulgaris HOM05D004846 ORTHO05D005630 0.0e+00 1186.0 959 62.0
HPP92_021915 Vanilla planifolia HOM05D004846 ORTHO05D005630 0.0e+00 1176.0 1119 55.0
Gohir.A10G160700 Gossypium hirsutum HOM05D004846 ORTHO05D005630 0.0e+00 1175.2 946 64.2
Hma1.2p1_0279F.1_g112220 Hydrangea macrophylla HOM05D004846 ORTHO05D005630 0.0e+00 1147.1 793 71.4
CDE01G0149 Ceratophyllum demersum HOM05D004846 ORTHO05D005630 0.0e+00 1103.2 1094 52.7
PGSC0003DMG403020229 Solanum tuberosum HOM05D004846 ORTHO05D005630 0.0e+00 1101.3 904 61.7
Mapoly0133s0025 Marchantia polymorpha HOM05D004846 ORTHO05D005630 7.5e-310 1067.4 1135 50.4
PGSC0003DMG402020229 Solanum tuberosum HOM05D004846 ORTHO05D005630 5.7e-302 1041.2 778 67.2
Glyma.16G063300 Glycine max HOM05D004846 ORTHO05D005630 1.4e-279 966.8 798 59.6
CDE02G2253 Ceratophyllum demersum HOM05D004846 ORTHO05D005630 4.0e-279 965.3 1022 51.2
Pp3c3_36830 Physcomitrium patens HOM05D004846 ORTHO05D005630 7.1e-276 954.5 1117 46.3
Nn7g36106 Nelumbo nucifera HOM05D004846 ORTHO05D005630 1.7e-274 949.9 649 71.0
Pp3c12_23520 Physcomitrium patens HOM05D004846 ORTHO05D005630 1.8e-271 939.9 1136 45.6
AagrBONN_evm.TU.Sc2ySwM_228.569 Anthoceros agrestis HOM05D004846 ORTHO05D005630 7.6e-262 907.9 1008 48.5
SMO119G0307 Selaginella moellendorffii HOM05D004846 ORTHO05D005630 3.4e-246 855.9 1096 44.1
Zm00001eb308720 Zea mays HOM05D004846 ORTHO05D005630 9.7e-233 811.2 820 51.5
Pp3c14_5780 Physcomitrium patens HOM05D004846 ORTHO05D005630 1.0e-202 711.4 970 42.7
unitig_1.g29345 Utricularia gibba HOM05D004846 ORTHO05D005630 6.4e-176 622.5 1102 37.2
Dinv33387 Davidia involucrata HOM05D004846 ORTHO05D005630 9.9e-161 572.0 410 68.5
SHI03857 Sapria himalayana HOM05D004846 ORTHO05D000023 6.0e-158 562.8 460 60.0
unitig_747.g22069 Utricularia gibba HOM05D004846 ORTHO05D005630 6.8e-154 549.3 1123 34.7
Ca_26120_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 1.4e-146 525.0 538 52.8
SEGI_08787 Sequoiadendron giganteum HOM05D004846 ORTHO05D005630 3.8e-120 437.2 334 63.8
unitig_748.g6968 Utricularia gibba HOM05D004846 ORTHO05D005630 1.2e-105 389.0 323 59.1
CBR_g922 Chara braunii HOM05D004846 ORTHO05D005630 2.3e-101 374.8 1310 26.6
unitig_748.g6967 Utricularia gibba HOM05D004846 ORTHO05D005630 1.5e-87 328.9 515 40.2
Ca_14683_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 1.2e-81 309.3 234 66.2
SEGI_28297 Sequoiadendron giganteum HOM05D004846 ORTHO05D005630 5.4e-74 283.9 369 43.4
Actinidia36162 Actinidia chinensis HOM05D004846 ORTHO05D005630 2.7e-73 281.6 375 43.7
CSS0035751 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 1.1e-63 249.6 251 55.0
CSS0049777 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 2.8e-62 245.0 253 53.4
Actinidia36160 Actinidia chinensis HOM05D004846 ORTHO05D005630 2.9e-59 235.0 228 50.9
CSS0015891 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 3.6e-54 218.0 202 57.4
Hma1.2p1_0279F.1_g112210 Hydrangea macrophylla HOM05D004846 ORTHO05D005630 4.0e-53 214.5 204 54.9
CSS0005966 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 1.2e-52 213.0 216 54.2
Cfa027235 Carpinus fangiana HOM05D004846 ORTHO05D005630 7.6e-44 183.7 366 34.7
CSS0025976 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 3.2e-42 178.3 175 54.9
CSS0029627 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 3.2e-42 178.3 175 54.9
CSS0035603 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 3.2e-42 178.3 175 54.9
CSS0050182 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 1.2e-41 176.4 175 54.3
CSS0012369 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 2.7e-41 175.3 175 54.3
CSS0012376 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 5.6e-39 167.5 236 43.2
Nn7g36110 Nelumbo nucifera HOM05D004846 ORTHO05D005630 5.6e-39 167.5 143 59.4
BcaC06g33836 Brassica carinata HOM05D004846 ORTHO05D017504 6.4e-35 154.1 245 40.4
BolC7t44149H Brassica oleracea HOM05D004846 ORTHO05D017504 2.4e-34 152.1 245 40.4
C07p36330 Brassica napus HOM05D004846 ORTHO05D017504 3.2e-34 151.8 241 40.7
CSS0003755 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 4.2e-34 151.4 175 49.7
MCO12G012 Micromonas commoda HOM05D004846 ORTHO05D005630 1.3e-30 139.8 362 30.1
Ca_26612_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 5.8e-28 131.0 241 36.5
Eucgr.J00244 Eucalyptus grandis HOM05D004846 ORTHO05D005630 2.3e-24 119.0 130 50.0
Dinv00598 Davidia involucrata HOM05D004846 ORTHO05D005630 4.0e-21 108.2 76 65.8
Ca_30652_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 1.2e-20 106.7 80 60.0
SEGI_31417 Sequoiadendron giganteum HOM05D004846 ORTHO05D005630 5.8e-20 104.4 103 53.4
Cre08.g363950 Chlamydomonas reinhardtii HOM05D004846 ORTHO05D005630 9.9e-20 103.6 301 28.9
Cpa.g.c47899 Carica papaya HOM05D004846 ORTHO05D005630 4.2e-18 98.2 58 70.7
Ca_14625_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 5.6e-15 87.8 71 56.3
HanXRQChr02g0047501 Helianthus annuus HOM05D004846 ORTHO05D005630 3.4e-12 78.6 50 74.0


User provided reference genes

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