Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0008633 Sechium edule HOM05D000306 ORTHO05D373463 1.5e-59 232.6 115 100.0
ClCG03G017640 Citrullus lanatus HOM05D000306 ORTHO05D010910 1.3e-10 70.1 62 59.7
CsaV3_1G038380 Cucumis sativus L. HOM05D000306 ORTHO05D010910 2.8e-10 68.9 95 46.3
COL.COLO4_04131 Corchorus olitorius HOM05D000306 ORTHO05D000410 3.7e-10 68.6 69 47.8
ClCG03G017450 Citrullus lanatus HOM05D000306 ORTHO05D010910 8.2e-10 67.4 82 50.0
ClCG03G017430 Citrullus lanatus HOM05D000306 ORTHO05D010910 1.1e-09 67.0 62 54.8
Prupe.6G315700 Prunus persica HOM05D000306 ORTHO05D000410 1.4e-09 66.6 69 46.4
Sed0018220 Sechium edule HOM05D000306 ORTHO05D010910 1.8e-09 66.2 66 56.1
MD12G1208300 Malus domestica HOM05D000306 ORTHO05D000410 2.4e-09 65.9 99 41.4
Sed0022934 Sechium edule HOM05D000306 ORTHO05D010910 2.4e-09 65.9 92 40.2
MD04G1195800 Malus domestica HOM05D000306 ORTHO05D000410 5.3e-09 64.7 78 44.9
PGR042G2200 Punica granatum HOM05D000306 ORTHO05D336533 6.9e-09 64.3 114 36.8
Sed0019537 Sechium edule HOM05D000306 ORTHO05D010910 9.1e-09 63.9 89 46.1
Thecc.05G320300 Theobroma cacao HOM05D000306 ORTHO05D000410 1.2e-08 63.5 69 44.9
TWI56G1149 Tripterygium wilfordii HOM05D000306 ORTHO05D000410 1.2e-08 63.5 80 45.0
MELO3C015264.2 Cucumis melo HOM05D000306 ORTHO05D010910 2.0e-08 62.8 71 47.9
CsaV3_1G038350 Cucumis sativus L. HOM05D000306 ORTHO05D010910 2.0e-08 62.8 62 56.5
Duzib106G0139 Durio zibethinus HOM05D000306 ORTHO05D000410 2.0e-08 62.8 69 43.5
MD12G1208500 Malus domestica HOM05D000306 ORTHO05D000410 2.0e-08 62.8 99 40.4
Nn4g25668 Nelumbo nucifera HOM05D000306 ORTHO05D000410 2.0e-08 62.8 68 48.5
Dinv24420 Davidia involucrata HOM05D000306 ORTHO05D000410 2.6e-08 62.4 58 51.7
MELO3C015266.2 Cucumis melo HOM05D000306 ORTHO05D010910 3.4e-08 62.0 76 46.1
PGR031G2772 Punica granatum HOM05D000306 ORTHO05D000410 3.4e-08 62.0 67 47.8
MELO3C015281.2 Cucumis melo HOM05D000306 ORTHO05D010910 7.7e-08 60.8 68 48.5
CsaV3_1G038550 Cucumis sativus L. HOM05D000306 ORTHO05D010910 7.7e-08 60.8 68 48.5
CsaV3_1G038360 Cucumis sativus L. HOM05D000306 ORTHO05D010910 1.0e-07 60.5 71 46.5
Dinv30864 Davidia involucrata HOM05D000306 ORTHO05D000410 1.0e-07 60.5 57 45.6
Gohir.D08G223600 Gossypium hirsutum HOM05D000306 ORTHO05D000410 1.0e-07 60.5 63 44.4
Gorai.004G237500 Gossypium raimondii HOM05D000306 ORTHO05D000410 1.0e-07 60.5 63 44.4
Sed0023796 Sechium edule HOM05D000306 ORTHO05D010910 1.0e-07 60.5 65 50.8
Nn3g21617 Nelumbo nucifera HOM05D000306 ORTHO05D000410 1.3e-07 60.1 65 47.7
ClCG03G017630 Citrullus lanatus HOM05D000306 ORTHO05D010910 1.7e-07 59.7 70 42.9
TWI12G1176 Tripterygium wilfordii HOM05D000306 ORTHO05D000410 1.7e-07 59.7 92 40.2
MELO3C015265.2 Cucumis melo HOM05D000306 ORTHO05D010910 2.2e-07 59.3 91 46.2
Duzib128G1342 Durio zibethinus HOM05D000306 ORTHO05D000410 2.2e-07 59.3 66 40.9
Duzib177G1091 Durio zibethinus HOM05D000306 ORTHO05D000410 2.2e-07 59.3 69 39.1
FvH4_6g07150 Fragaria vesca HOM05D000306 ORTHO05D000410 2.9e-07 58.9 75 40.0
FAN14G5715 Fragaria x ananassa HOM05D000306 ORTHO05D000410 2.9e-07 58.9 75 40.0
Lsat_1_v5_gn_7_73381 Lactuca sativa HOM05D000306 ORTHO05D000410 2.9e-07 58.9 73 43.8
PGR042G0908 Punica granatum HOM05D000306 ORTHO05D336469 2.9e-07 58.9 72 41.7
Sabra13G0009200 Salix brachista HOM05D000306 ORTHO05D000410 2.9e-07 58.9 71 46.5
Sed0002361 Sechium edule HOM05D000306 ORTHO05D010910 2.9e-07 58.9 86 39.5
CsaV3_1G038390 Cucumis sativus L. HOM05D000306 ORTHO05D010910 3.8e-07 58.5 72 43.1
Oeu035489.1 Olea europaea HOM05D000306 ORTHO05D000410 3.8e-07 58.5 86 41.9
THA.LOC104802778 Tarenaya hassleriana HOM05D000306 ORTHO05D012034 5.0e-07 58.2 62 48.4
Manes.08G112800 Manihot esculenta HOM05D000306 ORTHO05D000410 6.5e-07 57.8 82 40.2
Peaxi162Scf00071g00439 Petunia axillaris HOM05D000306 ORTHO05D000410 8.5e-07 57.4 57 50.9
Migut.B00990 Erythranthe guttata HOM05D000306 ORTHO05D000410 1.1e-06 57.0 68 39.7
Gohir.A08G207000 Gossypium hirsutum HOM05D000306 ORTHO05D000410 1.4e-06 56.6 63 44.4
TAR362G0155 Trochodendron aralioides HOM05D000306 ORTHO05D000410 1.4e-06 56.6 65 41.5
Hma1.2p1_0472F.1_g159860 Hydrangea macrophylla HOM05D000306 ORTHO05D000410 1.9e-06 56.2 65 43.1
Medtr4g106810 Medicago truncatula HOM05D000306 ORTHO05D000410 1.9e-06 56.2 71 40.8
Oeu053697.1 Olea europaea HOM05D000306 ORTHO05D000410 1.9e-06 56.2 85 42.4
Psat4g056120 Pisum sativum HOM05D000306 ORTHO05D000410 1.9e-06 56.2 71 40.8
Ca_21895_v3 Cicer arietinum L. HOM05D000306 ORTHO05D000410 2.5e-06 55.8 79 38.0
FAN02G1290 Fragaria x ananassa HOM05D000306 ORTHO05D000410 2.5e-06 55.8 78 39.7
Gohir.D13G114200 Gossypium hirsutum HOM05D000306 ORTHO05D000410 2.5e-06 55.8 63 41.3
Gorai.013G128100 Gossypium raimondii HOM05D000306 ORTHO05D000410 2.5e-06 55.8 63 41.3
Lj5A338T65 Lonicera japonica HOM05D000306 ORTHO05D000410 2.5e-06 55.8 59 42.4
Potri.013G010700 Populus trichocarpa HOM05D000306 ORTHO05D000410 2.5e-06 55.8 66 40.9
PGR083G2250 Punica granatum HOM05D000306 ORTHO05D000410 2.5e-06 55.8 60 48.3
ClCG03G017470 Citrullus lanatus HOM05D000306 ORTHO05D010910 3.2e-06 55.5 75 44.0
DCAR_025268 Daucus carota HOM05D000306 ORTHO05D000410 3.2e-06 55.5 74 39.2
FAN09G1489 Fragaria x ananassa HOM05D000306 ORTHO05D000410 3.2e-06 55.5 69 42.0
Potri.005G020200 Populus trichocarpa HOM05D000306 ORTHO05D000410 3.2e-06 55.5 66 42.4
CSS0025867 Camellia sinensis var. sinensis HOM05D000306 ORTHO05D000410 4.2e-06 55.1 59 45.8
Cpa.g.sc48.136 Carica papaya HOM05D000306 ORTHO05D000410 4.2e-06 55.1 72 41.7
CDE01G0089 Ceratophyllum demersum HOM05D000306 ORTHO05D000410 4.2e-06 55.1 65 35.4
HanXRQChr17g0534501 Helianthus annuus HOM05D000306 ORTHO05D000410 4.2e-06 55.1 61 41.0
Gohir.A13G111400 Gossypium hirsutum HOM05D000306 ORTHO05D000410 5.5e-06 54.7 63 41.3
Lj9A207G38 Lonicera japonica HOM05D000306 ORTHO05D000410 5.5e-06 54.7 59 45.8
Lj4g0015244 Lotus japonicus HOM05D000306 ORTHO05D000410 5.5e-06 54.7 60 43.3
TPR.G37569 Trifolium pratense HOM05D000306 ORTHO05D000410 5.5e-06 54.7 60 41.7
Zm00001eb014150 Zea mays HOM05D000306 ORTHO05D000410 5.5e-06 54.7 58 44.8
ClCG03G017410 Citrullus lanatus HOM05D000306 ORTHO05D010910 7.2e-06 54.3 111 38.7
FAN05G4637 Fragaria x ananassa HOM05D000306 ORTHO05D000410 7.2e-06 54.3 75 37.3
Hma1.2p1_1320F.1_g275410 Hydrangea macrophylla HOM05D000306 ORTHO05D000410 7.2e-06 54.3 66 42.4
Lsat_1_v5_gn_5_78281 Lactuca sativa HOM05D000005 ORTHO05D000012 7.2e-06 54.3 61 47.5
Sed0019509 Sechium edule HOM05D000306 ORTHO05D000410 7.2e-06 54.3 68 36.8
Sed0022389 Sechium edule HOM05D000306 ORTHO05D010910 7.2e-06 54.3 65 50.8
Zm00001eb396470 Zea mays HOM05D000306 ORTHO05D000410 7.2e-06 54.3 58 44.8
Aa31LG8G15870 Aethionema arabicum HOM05D000306 ORTHO05D000410 9.4e-06 53.9 82 37.8
AT5G26920 Arabidopsis thaliana HOM05D000306 ORTHO05D012034 9.4e-06 53.9 61 45.9
CSS0000602 Camellia sinensis var. sinensis HOM05D000306 ORTHO05D000410 9.4e-06 53.9 77 42.9
Migut.M01207 Erythranthe guttata HOM05D000306 ORTHO05D000410 9.4e-06 53.9 69 36.2
Lj9A207T39 Lonicera japonica HOM05D000306 ORTHO05D000410 9.4e-06 53.9 59 44.1
vmacro01544 Vaccinium macrocarpon HOM05D000306 ORTHO05D000410 9.4e-06 53.9 69 39.1


User provided reference genes

Program Settings