Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0008626 Sechium edule HOM05D005674 ORTHO05D007015 4.2e-81 306.2 460 100.0
MELO3C033809.2 Cucumis melo HOM05D005674 ORTHO05D007015 2.0e-30 137.9 457 69.4
CsaV3_5G005440 Cucumis sativus L. HOM05D005674 ORTHO05D007015 6.4e-29 132.9 463 66.7
Sed0024338 Sechium edule HOM05D005674 ORTHO05D007015 1.2e-27 128.6 81 74.1
Cfa012588 Carpinus fangiana HOM05D005674 ORTHO05D007015 2.0e-27 127.9 80 75.0
ClCG07G002660 Citrullus lanatus HOM05D005674 ORTHO05D007015 3.3e-25 120.6 79 70.9
CsaV3_4G030900 Cucumis sativus L. HOM05D005674 ORTHO05D007015 3.3e-25 120.6 78 71.8
CiPaw.03G192600 Carya illinoinensis HOM05D005674 ORTHO05D007015 4.3e-25 120.2 78 74.4
QL08p042254 Quercus lobata HOM05D005674 ORTHO05D007015 5.6e-25 119.8 78 74.4
GSVIVG01024415001 Vitis vinifera HOM05D005674 ORTHO05D007015 5.2e-23 113.2 76 68.4
arahy.Tifrunner.gnm1.ann1.U482D3 Arachis hypogaea HOM05D005674 ORTHO05D007015 1.5e-22 111.7 80 60.0
CSS0001557 Camellia sinensis var. sinensis HOM05D005674 ORTHO05D007015 1.5e-22 111.7 79 68.4
Manes.09G079700 Manihot esculenta HOM05D005674 ORTHO05D007015 2.6e-22 110.9 78 67.9
Manes.08G068200 Manihot esculenta HOM05D005674 ORTHO05D007015 7.5e-22 109.4 77 68.8
arahy.Tifrunner.gnm1.ann1.MAGV51 Arachis hypogaea HOM05D005674 ORTHO05D007015 1.3e-21 108.6 80 57.5
VMungo1309G1849 Vigna mungo HOM05D005674 ORTHO05D007015 1.3e-21 108.6 79 63.3
arahy.Tifrunner.gnm1.ann1.I145LQ Arachis hypogaea HOM05D005674 ORTHO05D007015 1.7e-21 108.2 77 59.7
CAN.G1360.18 Capsicum annuum HOM05D005674 ORTHO05D007015 3.7e-21 107.1 80 60.0
Hma1.2p1_0067F.1_g036940 Hydrangea macrophylla HOM05D005674 ORTHO05D007015 4.9e-21 106.7 78 65.4
DCAR_018956 Daucus carota HOM05D005674 ORTHO05D007015 8.3e-21 105.9 78 61.5
arahy.Tifrunner.gnm1.ann1.JH6JIJ Arachis hypogaea HOM05D005674 ORTHO05D007015 1.1e-20 105.5 78 57.7
Actinidia00858 Actinidia chinensis HOM05D005674 ORTHO05D007015 1.4e-20 105.1 79 64.6
Dinv12372 Davidia involucrata HOM05D005674 ORTHO05D007015 1.9e-20 104.8 75 66.7
Lj1P677T28 Lonicera japonica HOM05D005674 ORTHO05D007015 1.9e-20 104.8 78 61.5
Psat0s443g0080 Pisum sativum HOM05D005674 ORTHO05D007015 3.2e-20 104.0 80 58.8
Solyc07g055220.3 Solanum lycopersicum HOM05D005674 ORTHO05D007015 3.2e-20 104.0 80 57.5
Sopen07g027000 Solanum pennellii HOM05D005674 ORTHO05D007015 3.2e-20 104.0 80 57.5
PGSC0003DMG401020415 Solanum tuberosum HOM05D005674 ORTHO05D007015 3.2e-20 104.0 79 59.5
Lalb_Chr01g0007701 Lupinus albus HOM05D005674 ORTHO05D007015 4.1e-20 103.6 80 58.8
Prupe.3G114500 Prunus persica HOM05D005674 ORTHO05D007015 4.1e-20 103.6 80 61.2
Atru.chr7.2335 Acer truncatum HOM05D005674 ORTHO05D007015 5.4e-20 103.2 82 58.5
MD07G1055100 Malus domestica HOM05D005674 ORTHO05D007015 7.0e-20 102.8 80 58.8
Ca_14577_v3 Cicer arietinum L. HOM05D005674 ORTHO05D007015 9.2e-20 102.4 80 58.8
Glyma.03G075500 Glycine max HOM05D005674 ORTHO05D007015 2.0e-19 101.3 81 59.3
Rhsim04G0075800 Rhododendron simsii HOM05D005674 ORTHO05D007015 2.0e-19 101.3 79 60.8
Sc04g0009990 Simmondsia chinensis HOM05D005674 ORTHO05D007015 3.5e-19 100.5 77 62.3
MD15G1427800 Malus domestica HOM05D005674 ORTHO05D007015 4.6e-19 100.1 80 56.2
Lsat_1_v5_gn_3_116841 Lactuca sativa HOM05D005674 ORTHO05D007015 6.0e-19 99.8 79 62.0
Prupe.4G280300 Prunus persica HOM05D005674 ORTHO05D007015 6.0e-19 99.8 80 61.2
C02p47730 Brassica napus HOM05D005674 ORTHO05D007015 7.8e-19 99.4 453 41.7
BolC2t10809H Brassica oleracea HOM05D005674 ORTHO05D007015 7.8e-19 99.4 453 41.7
Dinv11955 Davidia involucrata HOM05D005674 ORTHO05D007015 7.8e-19 99.4 70 67.1
Ciclev10008244m.g Citrus clementina HOM05D005674 ORTHO05D007015 1.3e-18 98.6 82 56.1
Gohir.A13G157000 Gossypium hirsutum HOM05D005674 ORTHO05D007015 1.7e-18 98.2 216 64.8
Cpa.g.sc90.66 Carica papaya HOM05D005674 ORTHO05D007015 3.9e-18 97.1 77 62.3
Duzib160G0406 Durio zibethinus HOM05D005674 ORTHO05D007015 3.9e-18 97.1 78 59.0
Phvul.009G126100 Phaseolus vulgaris HOM05D005674 ORTHO05D007015 6.6e-18 96.3 79 59.5
Thecc.01G153300 Theobroma cacao HOM05D005674 ORTHO05D007015 8.6e-18 95.9 75 60.0
HanXRQChr13g0421081 Helianthus annuus HOM05D005674 ORTHO05D007015 1.5e-17 95.1 75 64.0
ECA240G0139 Erigeron canadensis HOM05D005674 ORTHO05D007015 1.9e-17 94.7 78 61.5
Sabra06G0005200 Salix brachista HOM05D005674 ORTHO05D007015 1.9e-17 94.7 79 54.4
CANSAT54G2399 Cannabis sativa HOM05D005674 ORTHO05D007015 4.3e-17 93.6 75 58.7
RcHm_v2.0_Chr2g0130841 Rosa chinensis HOM05D005674 ORTHO05D007015 7.3e-17 92.8 80 58.8
Gohir.D10G254800 Gossypium hirsutum HOM05D005674 ORTHO05D007015 9.5e-17 92.4 78 55.1
Lj3g0025693 Lotus japonicus HOM05D005674 ORTHO05D007015 9.5e-17 92.4 76 55.3
Gorai.011G295800 Gossypium raimondii HOM05D005674 ORTHO05D007015 1.2e-16 92.0 78 53.8
Medtr7g024140 Medicago truncatula HOM05D005674 ORTHO05D007015 1.2e-16 92.0 75 57.3
CAN.G625.40 Capsicum annuum HOM05D005674 ORTHO05D007015 1.6e-16 91.7 235 66.4
PGSC0003DMG400026386 Solanum tuberosum HOM05D005674 ORTHO05D007015 1.6e-16 91.7 80 53.8
Gohir.A10G242800 Gossypium hirsutum HOM05D005674 ORTHO05D007015 2.1e-16 91.3 77 54.5
Solyc02g086230.2 Solanum lycopersicum HOM05D005674 ORTHO05D007015 2.1e-16 91.3 80 52.5
Sopen02g030910 Solanum pennellii HOM05D005674 ORTHO05D007015 2.1e-16 91.3 80 52.5
TPR.G14745 Trifolium pratense HOM05D005674 ORTHO05D007015 2.1e-16 91.3 80 52.5
Gorai.013G183800 Gossypium raimondii HOM05D005674 ORTHO05D007015 2.8e-16 90.9 77 54.5
PGR142G3640 Punica granatum HOM05D005674 ORTHO05D007015 3.6e-16 90.5 77 61.0
Hund00863 Selenicereus undatus HOM05D005674 ORTHO05D007015 3.6e-16 90.5 82 51.2
TAR627G1060 Trochodendron aralioides HOM05D005674 ORTHO05D007015 4.7e-16 90.1 76 55.3
BcaC03g16871 Brassica carinata HOM05D005674 ORTHO05D007015 6.2e-16 89.7 453 43.5
Gohir.D13G161800 Gossypium hirsutum HOM05D005674 ORTHO05D007015 6.2e-16 89.7 76 55.3
CARHR224650 Cardamine hirsuta HOM05D005674 ORTHO05D007015 1.4e-15 88.6 78 56.4
BcaC06g33618 Brassica carinata HOM05D005674 ORTHO05D007015 2.3e-15 87.8 80 53.8
Nitab4.5_0007923g0040 Nicotiana tabacum HOM05D005674 ORTHO05D007015 5.2e-15 86.7 80 51.2
FvH4_6g27690 Fragaria vesca HOM05D005674 ORTHO05D007015 6.8e-15 86.3 78 53.8
Potri.006G006500 Populus trichocarpa HOM05D005674 ORTHO05D007015 8.9e-15 85.9 79 49.4
MBI15_g37633_MAGBIO Magnolia biondii HOM05D000146 ORTHO05D000178 1.2e-14 85.5 77 54.5
CAN.G1034.39 Capsicum annuum HOM05D005674 ORTHO05D033540 1.5e-14 85.1 204 51.5
SGA_v2.0_scaffold18G08491 Striga asiatica HOM05D005674 ORTHO05D007015 1.5e-14 85.1 77 50.6
TWI12G0566 Tripterygium wilfordii HOM05D005674 ORTHO05D007015 1.5e-14 85.1 80 52.5
Thhalv10025145m.g Eutrema salsugineum HOM05D005674 ORTHO05D007015 2.0e-14 84.7 80 51.2
TWI31G0445 Tripterygium wilfordii HOM05D005674 ORTHO05D007015 2.6e-14 84.3 77 53.2
BolC7t45434H Brassica oleracea HOM05D005674 ORTHO05D007015 3.4e-14 84.0 77 53.2
Migut.F00129 Erythranthe guttata HOM05D005674 ORTHO05D007015 3.4e-14 84.0 80 47.5
SalBow4G2062 Salvia bowleyana HOM05D005674 ORTHO05D007015 3.4e-14 84.0 80 45.0
Nitab4.5_0000249g0090 Nicotiana tabacum HOM05D005674 ORTHO05D007015 4.4e-14 83.6 75 53.3
MELO3C020050.2 Cucumis melo HOM05D005674 ORTHO05D007015 5.8e-14 83.2 52 75.0
THA.LOC104806715 Tarenaya hassleriana HOM05D005674 ORTHO05D007015 9.9e-14 82.4 76 52.6
TPR.G15161 Trifolium pratense HOM05D005674 ORTHO05D007015 9.9e-14 82.4 80 48.8
MELO3C033079.2 Cucumis melo HOM05D005674 ORTHO05D031076 2.2e-13 81.3 62 66.1
CsaV3_5G013070 Cucumis sativus L. HOM05D005674 ORTHO05D007015 2.9e-13 80.9 52 71.2
CsaV3_UNG017130 Cucumis sativus L. HOM05D005674 ORTHO05D007015 2.9e-13 80.9 52 71.2
A03p50860 Brassica napus HOM05D005674 ORTHO05D007015 3.7e-13 80.5 74 54.1
BraA03t14173Z Brassica rapa HOM05D005674 ORTHO05D007015 3.7e-13 80.5 74 54.1
PSO063G6562 Papaver somniferum HOM05D005674 ORTHO05D007015 3.7e-13 80.5 79 51.9
PSO782G5737 Papaver somniferum HOM05D005674 ORTHO05D007015 3.7e-13 80.5 79 51.9
AUR62024049 Chenopodium quinoa HOM05D005674 ORTHO05D007015 4.9e-13 80.1 71 50.7
AUR62040438 Chenopodium quinoa HOM05D005674 ORTHO05D007015 4.9e-13 80.1 71 50.7
Cc05_g08520 Coffea canephora HOM05D005674 ORTHO05D007015 4.9e-13 80.1 79 44.3
A02p30210 Brassica napus HOM05D005674 ORTHO05D007015 6.4e-13 79.7 49 77.6
BraA02t08037Z Brassica rapa HOM05D005674 ORTHO05D007015 6.4e-13 79.7 49 77.6
Sp7g16190 Schrenkiella parvula HOM05D005674 ORTHO05D007015 6.4e-13 79.7 74 52.7
Sp2g11490 Schrenkiella parvula HOM05D005674 ORTHO05D007015 8.3e-13 79.3 79 53.2
Aa31LG10G3050 Aethionema arabicum HOM05D005674 ORTHO05D007015 1.1e-12 79.0 79 51.9
Nn2g12528 Nelumbo nucifera HOM05D005674 ORTHO05D007015 1.1e-12 79.0 52 69.2
AL8G11670 Arabidopsis lyrata HOM05D005674 ORTHO05D007015 1.4e-12 78.6 79 51.9
C07p49250 Brassica napus HOM05D005674 ORTHO05D007015 1.4e-12 78.6 73 53.4
CARHR174820 Cardamine hirsuta HOM05D005674 ORTHO05D007015 1.4e-12 78.6 79 53.2
Thhalv10001221m.g Eutrema salsugineum HOM05D005674 ORTHO05D007015 1.4e-12 78.6 58 70.7
AT5G46680 Arabidopsis thaliana HOM05D005674 ORTHO05D007015 1.9e-12 78.2 79 50.6
Duzib116G0841 Durio zibethinus HOM05D005674 ORTHO05D007015 3.2e-12 77.4 52 69.2
AL7G36590 Arabidopsis lyrata HOM05D005674 ORTHO05D007015 4.1e-12 77.0 69 55.1
Carub.0008s0124 Capsella rubella HOM05D005674 ORTHO05D007015 4.1e-12 77.0 79 50.6
Peaxi162Scf00888g00007 Petunia axillaris HOM05D005674 ORTHO05D007015 7.1e-12 76.3 80 47.5
Carub.0007s2342 Capsella rubella HOM05D005674 ORTHO05D007015 9.2e-12 75.9 70 52.9
Nitab4.5_0000753g0050 Nicotiana tabacum HOM05D005674 ORTHO05D007015 9.2e-12 75.9 75 52.0
Aa31LG6G670 Aethionema arabicum HOM05D005674 ORTHO05D007015 1.2e-11 75.5 75 52.0
Eucgr.K01145 Eucalyptus grandis HOM05D005674 ORTHO05D007015 4.6e-11 73.6 47 68.1
HPP92_017208 Vanilla planifolia HOM05D005674 ORTHO05D007015 1.3e-10 72.0 48 66.7
CAN.G1360.17 Capsicum annuum HOM05D001556 ORTHO05D001505 1.7e-10 71.6 43 69.8
COL.COLO4_33609 Corchorus olitorius HOM05D005674 ORTHO05D007015 3.0e-10 70.9 75 46.7
TAR626G0412 Trochodendron aralioides HOM05D005674 ORTHO05D007015 3.0e-10 70.9 45 68.9
Nitab4.5_0007990g0010 Nicotiana tabacum HOM05D005674 ORTHO05D007015 8.6e-10 69.3 71 50.7
Os02g0793200 Oryza sativa ssp. japonica HOM05D005674 ORTHO05D007015 1.1e-09 68.9 73 43.8
ATR1132G073 Amborella trichopoda HOM05D005674 ORTHO05D007015 2.5e-09 67.8 43 67.4
BcaC06g31458 Brassica carinata HOM05D005674 ORTHO05D007015 1.6e-08 65.1 80 45.0
Aqoxy3G02039 Aquilegia oxysepala HOM05D005674 ORTHO05D007015 2.1e-08 64.7 49 63.3
Zm00001eb201010 Zea mays HOM05D005674 ORTHO05D007015 2.1e-08 64.7 70 44.3
FAN23G2012 Fragaria x ananassa HOM05D005674 ORTHO05D007015 1.2e-06 58.9 43 60.5
Psat5g177920 Pisum sativum HOM05D005674 ORTHO05D007015 1.2e-06 58.9 36 69.4


User provided reference genes

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