Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0008555 Sechium edule HOM05D004998 ORTHO05D006104 1.8e-83 312.8 187 100.0
ClCG02G020020 Citrullus lanatus HOM05D004998 ORTHO05D006104 3.7e-60 235.3 190 69.5
CsaV3_6G016720 Cucumis sativus L. HOM05D004998 ORTHO05D006104 8.0e-55 217.6 189 65.6
MELO3C025903.2 Cucumis melo HOM05D004998 ORTHO05D006104 1.2e-50 203.8 190 64.2
TWI75G0636 Tripterygium wilfordii HOM05D004998 ORTHO05D006104 2.3e-41 172.9 185 55.1
GSVIVG01024930001 Vitis vinifera HOM05D004998 ORTHO05D006104 1.5e-40 170.2 185 53.0
Hma1.2p1_0615F.1_g189810 Hydrangea macrophylla HOM05D004998 ORTHO05D006104 1.5e-37 160.2 189 53.4
TWI79G0863 Tripterygium wilfordii HOM05D004998 ORTHO05D006104 2.6e-37 159.5 189 51.9
Dinv17028 Davidia involucrata HOM05D004998 ORTHO05D006104 1.7e-36 156.8 188 51.6
Dinv42976 Davidia involucrata HOM05D004998 ORTHO05D006104 1.7e-36 156.8 188 51.6
Dinv43123 Davidia involucrata HOM05D004998 ORTHO05D006104 1.7e-36 156.8 188 51.6
Cfa011521 Carpinus fangiana HOM05D004998 ORTHO05D006104 2.2e-36 156.4 185 53.0
MD03G1088800 Malus domestica HOM05D004998 ORTHO05D006104 3.7e-36 155.6 189 53.4
CiPaw.14G067400 Carya illinoinensis HOM05D004998 ORTHO05D006104 8.3e-36 154.5 186 52.2
Atru.chr3.3979 Acer truncatum HOM05D004998 ORTHO05D006104 1.4e-35 153.7 188 50.5
QL01p031100 Quercus lobata HOM05D004998 ORTHO05D006104 1.8e-35 153.3 188 58.0
Prupe.6G073200 Prunus persica HOM05D004998 ORTHO05D006104 9.2e-35 151.0 185 52.4
MD11G1097800 Malus domestica HOM05D004998 ORTHO05D006104 2.7e-34 149.4 189 51.9
Glyma.15G036800 Glycine max HOM05D004998 ORTHO05D006104 4.6e-34 148.7 181 49.2
RcHm_v2.0_Chr5g0065711 Rosa chinensis HOM05D004998 ORTHO05D006104 4.6e-34 148.7 188 51.6
Lj1A149T62 Lonicera japonica HOM05D004998 ORTHO05D006104 1.7e-33 146.7 189 51.3
Potri.009G033400 Populus trichocarpa HOM05D004998 ORTHO05D006104 1.7e-33 146.7 187 50.3
CSS0032367 Camellia sinensis var. sinensis HOM05D004998 ORTHO05D006104 2.3e-33 146.4 186 51.6
Sabra09G0023800 Salix brachista HOM05D004998 ORTHO05D006104 2.3e-33 146.4 180 52.8
TAR633G0520 Trochodendron aralioides HOM05D004998 ORTHO05D006104 6.6e-33 144.8 189 48.1
CSS0033668 Camellia sinensis var. sinensis HOM05D004998 ORTHO05D006104 1.9e-32 143.3 187 51.3
Phvul.L006843 Phaseolus vulgaris HOM05D004998 ORTHO05D006104 2.5e-32 142.9 182 48.9
Manes.01G171600 Manihot esculenta HOM05D004998 ORTHO05D006104 4.3e-32 142.1 186 49.5
TAR636G1117 Trochodendron aralioides HOM05D004998 ORTHO05D006104 5.6e-32 141.7 193 48.2
FvH4_3g36750 Fragaria vesca HOM05D004998 ORTHO05D006104 7.3e-32 141.4 187 50.3
VMungo1080G1028 Vigna mungo HOM05D004998 ORTHO05D006104 7.3e-32 141.4 181 47.5
Lalb_Chr03g0026531 Lupinus albus HOM05D004998 ORTHO05D006104 9.5e-32 141.0 186 50.0
CiPaw.13G091800 Carya illinoinensis HOM05D004998 ORTHO05D006104 1.2e-31 140.6 177 50.8
Ciclev10029345m.g Citrus clementina HOM05D004998 ORTHO05D006104 1.2e-31 140.6 185 49.2
FAN11G2014 Fragaria x ananassa HOM05D004998 ORTHO05D006104 3.6e-31 139.0 187 50.8
Glyma.13G337700 Glycine max HOM05D004998 ORTHO05D006104 4.7e-31 138.7 181 49.2
Nn2g11147 Nelumbo nucifera HOM05D004998 ORTHO05D006104 8.0e-31 137.9 191 46.6
Duzib168G2185 Durio zibethinus HOM05D004998 ORTHO05D006104 1.8e-30 136.7 183 50.3
Duzib150G0269 Durio zibethinus HOM05D004998 ORTHO05D006104 3.1e-30 136.0 183 52.5
Gohir.A05G094300 Gossypium hirsutum HOM05D004998 ORTHO05D006104 4.0e-30 135.6 185 50.8
PGR102G0830 Punica granatum HOM05D004998 ORTHO05D006104 4.0e-30 135.6 189 46.0
Eucgr.B02327 Eucalyptus grandis HOM05D004998 ORTHO05D006104 5.2e-30 135.2 182 46.2
Actinidia23927 Actinidia chinensis HOM05D004998 ORTHO05D006104 6.8e-30 134.8 182 48.4
Rhsim13G0078800 Rhododendron simsii HOM05D004998 ORTHO05D006104 1.5e-29 133.7 182 48.4
Actinidia34418 Actinidia chinensis HOM05D004998 ORTHO05D006104 2.0e-29 133.3 186 47.8
Thecc.09G318900 Theobroma cacao HOM05D004998 ORTHO05D006104 2.0e-29 133.3 186 50.0
CANSAT54G1321 Cannabis sativa HOM05D004998 ORTHO05D006104 3.4e-29 132.5 183 47.0
FAN21G1380 Fragaria x ananassa HOM05D004998 ORTHO05D006104 3.4e-29 132.5 194 49.0
Migut.D02075 Erythranthe guttata HOM05D004998 ORTHO05D006104 5.8e-29 131.7 185 47.0
Lj3g0014072 Lotus japonicus HOM05D004998 ORTHO05D006104 1.3e-28 130.6 182 47.8
Medtr2g097480 Medicago truncatula HOM05D004998 ORTHO05D006104 1.3e-28 130.6 182 47.8
Hund18896 Selenicereus undatus HOM05D004998 ORTHO05D006104 1.3e-28 130.6 185 45.9
THA.LOC104810769 Tarenaya hassleriana HOM05D004998 ORTHO05D006104 1.3e-28 130.6 185 44.9
COL.COLO4_18543 Corchorus olitorius HOM05D004998 ORTHO05D006104 1.7e-28 130.2 186 47.8
Cc01_g13080 Coffea canephora HOM05D004998 ORTHO05D006104 2.2e-28 129.8 188 45.7
EL10Ac7g16043 Beta vulgaris HOM05D004998 ORTHO05D006104 4.9e-28 128.6 187 46.5
Psat5g285160 Pisum sativum HOM05D004998 ORTHO05D006104 4.9e-28 128.6 178 49.4
arahy.Tifrunner.gnm1.ann1.AD2TJP Arachis hypogaea HOM05D004998 ORTHO05D006104 6.4e-28 128.3 187 48.1
arahy.Tifrunner.gnm1.ann1.JSTV8M Arachis hypogaea HOM05D004998 ORTHO05D006104 1.1e-27 127.5 187 48.1
vmacro03047 Vaccinium macrocarpon HOM05D004998 ORTHO05D006104 1.4e-27 127.1 183 47.0
AUR62001761 Chenopodium quinoa HOM05D004998 ORTHO05D006104 7.0e-27 124.8 186 44.1
AUR62009547 Chenopodium quinoa HOM05D004998 ORTHO05D006104 9.2e-27 124.4 187 44.9
FAN16G3214 Fragaria x ananassa HOM05D004998 ORTHO05D006104 9.2e-27 124.4 205 46.3
Sp6g21150 Schrenkiella parvula HOM05D004998 ORTHO05D006104 3.5e-26 122.5 187 45.5
CARHR285830 Cardamine hirsuta HOM05D004998 ORTHO05D006104 4.6e-26 122.1 186 45.2
MBI14_g12121_MAGBIO Magnolia biondii HOM05D004998 ORTHO05D006104 4.6e-26 122.1 190 42.6
AL8G35930 Arabidopsis lyrata HOM05D004998 ORTHO05D006104 7.8e-26 121.3 186 45.7
BcaB08g36256 Brassica carinata HOM05D004998 ORTHO05D006104 1.0e-25 120.9 185 44.3
Gohir.D05G094800 Gossypium hirsutum HOM05D004998 ORTHO05D006104 1.3e-25 120.6 185 48.6
TPR.G5593 Trifolium pratense HOM05D004998 ORTHO05D006104 1.3e-25 120.6 183 56.8
Gorai.009G098000 Gossypium raimondii HOM05D004998 ORTHO05D006104 2.3e-25 119.8 185 48.6
Lsat_1_v5_gn_9_23841 Lactuca sativa HOM05D004998 ORTHO05D006104 2.3e-25 119.8 185 46.5
Nn2g13381 Nelumbo nucifera HOM05D004998 ORTHO05D006104 5.0e-25 118.6 186 44.1
SalBow3G1756 Salvia bowleyana HOM05D004998 ORTHO05D006104 5.0e-25 118.6 186 44.1
SGA_v2.0_scaffold41G15739 Striga asiatica HOM05D004998 ORTHO05D006104 5.0e-25 118.6 187 44.4
C03p13690 Brassica napus HOM05D004998 ORTHO05D006104 8.6e-25 117.9 189 43.9
Ah.08g219770 Amaranthus hybridus HOM05D004998 ORTHO05D006104 1.1e-24 117.5 195 45.1
Thhalv10014846m.g Eutrema salsugineum HOM05D004998 ORTHO05D006104 1.1e-24 117.5 188 44.1
HanXRQChr07g0197281 Helianthus annuus HOM05D004998 ORTHO05D006104 2.5e-24 116.3 189 45.5
Carub.0008s2013 Capsella rubella HOM05D004998 ORTHO05D006104 7.3e-24 114.8 186 44.1
Thhalv10002686m.g Eutrema salsugineum HOM05D004998 ORTHO05D006104 9.5e-24 114.4 190 40.5
Solyc06g005600.3 Solanum lycopersicum HOM05D004998 ORTHO05D006104 1.2e-23 114.0 189 45.0
ATR0559G067 Amborella trichopoda HOM05D004998 ORTHO05D006104 1.6e-23 113.6 186 43.5
DCAR_005961 Daucus carota HOM05D004998 ORTHO05D006104 1.6e-23 113.6 188 44.7
PGSC0003DMG400002149 Solanum tuberosum HOM05D004998 ORTHO05D006104 1.6e-23 113.6 188 44.7
AT5G59460 Arabidopsis thaliana HOM05D004998 ORTHO05D006104 2.1e-23 113.2 186 46.2
Haze_24126 Corylus avellana HOM05D004998 ORTHO05D006104 2.1e-23 113.2 94 66.0
Sopen06g001560 Solanum pennellii HOM05D004998 ORTHO05D006104 2.1e-23 113.2 189 45.0
Aqoxy1G00915 Aquilegia oxysepala HOM05D004998 ORTHO05D006104 1.4e-22 110.5 197 42.1
HanXRQChr12g0374241 Helianthus annuus HOM05D004998 ORTHO05D006104 1.8e-22 110.2 189 43.4
BcaC03g14012 Brassica carinata HOM05D004998 ORTHO05D006104 2.3e-22 109.8 186 43.0
C02p12480 Brassica napus HOM05D004998 ORTHO05D006104 2.3e-22 109.8 186 43.0
BolC2t07348H Brassica oleracea HOM05D004998 ORTHO05D006104 2.3e-22 109.8 186 43.0
Peaxi162Scf00092g01117 Petunia axillaris HOM05D004998 ORTHO05D006104 3.1e-22 109.4 187 41.7
MSTRG.18567 Avicennia marina HOM05D004998 ORTHO05D006104 1.2e-21 107.5 186 43.0
Nitab4.5_0000272g0050 Nicotiana tabacum HOM05D004998 ORTHO05D006104 1.2e-21 107.5 199 49.7
ECA247G2861 Erigeron canadensis HOM05D004998 ORTHO05D006104 1.5e-21 107.1 194 42.3
BraA02t05793Z Brassica rapa HOM05D004998 ORTHO05D006104 2.0e-21 106.7 186 42.5
CDE02G2808 Ceratophyllum demersum HOM05D004998 ORTHO05D006104 2.6e-21 106.3 182 44.0
Gohir.A03G043800 Gossypium hirsutum HOM05D004998 ORTHO05D006104 2.6e-21 106.3 155 51.0
A02p07120 Brassica napus HOM05D004998 ORTHO05D006104 1.3e-20 104.0 186 41.9
Dinv06259 Davidia involucrata HOM05D004998 ORTHO05D006104 2.2e-20 103.2 100 64.0
Gohir.D03G123600 Gossypium hirsutum HOM05D004998 ORTHO05D006104 2.2e-20 103.2 173 48.6
Os01g0144600 Oryza sativa ssp. japonica HOM05D004998 ORTHO05D006104 4.9e-20 102.1 197 40.6
Aa31LG1G11810 Aethionema arabicum HOM05D000959 ORTHO05D000775 3.2e-19 99.4 177 45.8
Cpa.g.sc81.121 Carica papaya HOM05D004998 ORTHO05D006104 3.2e-19 99.4 75 68.0
BcaB05g22508 Brassica carinata HOM05D004998 ORTHO05D006104 4.1e-19 99.0 188 41.5
Gorai.003G130300 Gossypium raimondii HOM05D004998 ORTHO05D006104 5.4e-19 98.6 173 47.4
Oeu053883.1 Olea europaea HOM05D004998 ORTHO05D006104 5.4e-19 98.6 168 42.3
PSO339G2709 Papaver somniferum HOM05D004998 ORTHO05D006104 1.6e-18 97.1 192 40.6
Aa31LG4G15620 Aethionema arabicum HOM05D004998 ORTHO05D006104 2.1e-18 96.7 189 39.7
BraA10t43749Z Brassica rapa HOM05D004998 ORTHO05D006104 3.5e-18 95.9 171 44.4
A10p16680 Brassica napus HOM05D004998 ORTHO05D006104 3.0e-17 92.8 171 43.9
Sc12g0001370 Simmondsia chinensis HOM05D004998 ORTHO05D006104 5.1e-17 92.0 134 44.0
Nitab4.5_0006945g0010 Nicotiana tabacum HOM05D004998 ORTHO05D006104 6.6e-17 91.7 89 61.8
HPP92_006623 Vanilla planifolia HOM05D004998 ORTHO05D006104 1.5e-16 90.5 228 39.9
CDE08G1537 Ceratophyllum demersum HOM05D004998 ORTHO05D006104 4.3e-16 89.0 162 38.9
Peaxi162Scf00122g01415 Petunia axillaris HOM05D004998 ORTHO05D006104 2.1e-15 86.7 186 35.5
C09p51870 Brassica napus HOM05D004998 ORTHO05D006104 4.7e-15 85.5 151 43.7
BolC3t13819H Brassica oleracea HOM05D004998 ORTHO05D006104 8.1e-15 84.7 150 41.3
FAN11G1834 Fragaria x ananassa HOM05D004998 ORTHO05D006104 1.2e-13 80.9 178 36.5
FvH4_3g41460 Fragaria vesca HOM05D004998 ORTHO05D006104 1.5e-13 80.5 178 36.5
Zm00001eb124480 Zea mays HOM05D004998 ORTHO05D006104 1.5e-13 80.5 82 58.5
FAN21G1361 Fragaria x ananassa HOM05D004998 ORTHO05D006104 1.9e-11 73.6 178 35.4
BolC9t58049H Brassica oleracea HOM05D004998 ORTHO05D006104 2.4e-11 73.2 103 47.6
BcaC04g19766 Brassica carinata HOM05D004998 ORTHO05D006104 9.2e-11 71.2 174 39.7
BcaC01g06521 Brassica carinata HOM05D004998 ORTHO05D006104 6.0e-10 68.6 185 37.8
FAN25G2664 Fragaria x ananassa HOM05D004998 ORTHO05D006104 6.0e-10 68.6 178 34.8
BcaB08g36255 Brassica carinata HOM05D004998 ORTHO05D006104 7.8e-10 68.2 171 39.8
Nitab4.5_0007132g0030 Nicotiana tabacum HOM05D004998 ORTHO05D006104 1.0e-09 67.8 172 46.5
BcaB01g04577 Brassica carinata HOM05D004998 ORTHO05D006104 3.0e-09 66.2 189 31.7
C03p13710 Brassica napus HOM05D004998 ORTHO05D006104 3.0e-09 66.2 139 37.4
Lalb_Chr01g0003571 Lupinus albus HOM05D004998 ORTHO05D006104 5.1e-09 65.5 133 36.8
BcaC09g48433 Brassica carinata HOM05D004998 ORTHO05D006104 7.3e-08 61.6 206 32.5
Pp3c16_15780 Physcomitrium patens HOM05D004998 ORTHO05D006104 1.1e-06 57.8 99 36.4
Mapoly0094s0023 Marchantia polymorpha HOM05D004998 ORTHO05D006104 5.2e-06 55.5 98 45.9


User provided reference genes

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