Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0008520 Sechium edule HOM05D007509 ORTHO05D009525 3.6e-57 224.6 104 100.0
Sed0001231 Sechium edule HOM05D007509 ORTHO05D009525 4.1e-24 114.8 69 84.1
MELO3C009368.2 Cucumis melo HOM05D007509 ORTHO05D009525 3.4e-23 111.7 69 81.2
CsaV3_3G036080 Cucumis sativus L. HOM05D007509 ORTHO05D009525 3.4e-23 111.7 69 81.2
TWI53G0287 Tripterygium wilfordii HOM05D007509 ORTHO05D009525 5.0e-14 81.3 70 54.3
CiPaw.09G170600 Carya illinoinensis HOM05D007509 ORTHO05D009525 1.1e-13 80.1 69 56.5
RcHm_v2.0_Chr3g0470531 Rosa chinensis HOM05D007509 ORTHO05D009525 7.2e-13 77.4 71 56.3
Rhsim03G0090000 Rhododendron simsii HOM05D007509 ORTHO05D009525 9.4e-13 77.0 48 64.6
arahy.Tifrunner.gnm1.ann1.KQD9UV Arachis hypogaea HOM05D007509 ORTHO05D009525 2.1e-12 75.9 67 55.2
Ciclev10013275m.g Citrus clementina HOM05D007509 ORTHO05D009525 2.7e-12 75.5 50 62.0
FAN02G1612 Fragaria x ananassa HOM05D007509 ORTHO05D009525 2.7e-12 75.5 70 51.4
Lj5g0013352 Lotus japonicus HOM05D007509 ORTHO05D009525 2.7e-12 75.5 67 53.7
Lalb_Chr02g0155761 Lupinus albus HOM05D007509 ORTHO05D009525 2.7e-12 75.5 69 53.6
arahy.Tifrunner.gnm1.ann1.M25UX0 Arachis hypogaea HOM05D007509 ORTHO05D009525 3.6e-12 75.1 67 53.7
arahy.Tifrunner.gnm1.ann1.Z0MF7F Arachis hypogaea HOM05D007509 ORTHO05D009525 3.6e-12 75.1 67 53.7
Duzib093G1616 Durio zibethinus HOM05D007509 ORTHO05D009525 6.1e-12 74.3 69 53.6
FvH4_6g16590 Fragaria vesca HOM05D007509 ORTHO05D009525 6.1e-12 74.3 70 51.4
FAN14G0331 Fragaria x ananassa HOM05D007509 ORTHO05D009525 6.1e-12 74.3 70 51.4
TWI74G1449 Tripterygium wilfordii HOM05D007509 ORTHO05D009525 6.1e-12 74.3 74 51.4
GSVIVG01033662001 Vitis vinifera HOM05D007509 ORTHO05D009525 6.1e-12 74.3 52 63.5
FAN09G1001 Fragaria x ananassa HOM05D007509 ORTHO05D009525 7.9e-12 73.9 58 51.7
MD12G1108800 Malus domestica HOM05D007509 ORTHO05D009525 7.9e-12 73.9 67 52.2
vmacro07305 Vaccinium macrocarpon HOM05D007509 ORTHO05D009525 7.9e-12 73.9 54 63.0
Cc06_g04400 Coffea canephora HOM05D007509 ORTHO05D009525 1.0e-11 73.6 44 70.5
Dinv35801 Davidia involucrata HOM05D007509 ORTHO05D009525 1.0e-11 73.6 62 51.6
FAN05G4600 Fragaria x ananassa HOM05D007509 ORTHO05D009525 1.0e-11 73.6 58 51.7
FAN05G4982 Fragaria x ananassa HOM05D007509 ORTHO05D009525 1.0e-11 73.6 58 51.7
Nn6g35255 Nelumbo nucifera HOM05D007509 ORTHO05D009525 1.0e-11 73.6 55 60.0
Actinidia32487 Actinidia chinensis HOM05D007509 ORTHO05D009525 1.4e-11 73.2 41 70.7
Cpa.g.sc92.105 Carica papaya HOM05D007509 ORTHO05D009525 1.4e-11 73.2 72 52.8
Gohir.A04G071200 Gossypium hirsutum HOM05D007509 ORTHO05D009525 1.8e-11 72.8 69 52.2
Gorai.009G414000 Gossypium raimondii HOM05D007509 ORTHO05D009525 1.8e-11 72.8 69 52.2
Psat6g074800 Pisum sativum HOM05D007509 ORTHO05D009525 1.8e-11 72.8 68 51.5
TPR.G31192 Trifolium pratense HOM05D007509 ORTHO05D009525 1.8e-11 72.8 69 53.6
Gohir.D04G109900 Gossypium hirsutum HOM05D007509 ORTHO05D009525 2.3e-11 72.4 69 50.7
Medtr1g063000 Medicago truncatula HOM05D007509 ORTHO05D009525 2.3e-11 72.4 67 52.2
Thecc.05G069500 Theobroma cacao HOM05D007509 ORTHO05D009525 2.3e-11 72.4 70 54.3
TAR369G0282 Trochodendron aralioides HOM05D007509 ORTHO05D009525 2.3e-11 72.4 67 50.7
Nn2g13827 Nelumbo nucifera HOM05D007509 ORTHO05D009525 3.9e-11 71.6 68 51.5
Cfa017635 Carpinus fangiana HOM05D006951 ORTHO05D008594 5.1e-11 71.2 70 52.9
Medtr7g102320 Medicago truncatula HOM05D007509 ORTHO05D009525 5.1e-11 71.2 69 50.7
Migut.L01714 Erythranthe guttata HOM05D007509 ORTHO05D009525 6.7e-11 70.9 66 47.0
Sc20g0005620 Simmondsia chinensis HOM05D006951 ORTHO05D008594 6.7e-11 70.9 74 48.6
Zm00001eb190910 Zea mays HOM05D007509 ORTHO05D009525 6.7e-11 70.9 71 50.7
Os02g0823600 Oryza sativa ssp. japonica HOM05D007509 ORTHO05D009525 8.8e-11 70.5 70 50.0
TPR.G32808 Trifolium pratense HOM05D001446 ORTHO05D001360 8.8e-11 70.5 54 57.4
Gorai.006G162100 Gossypium raimondii HOM05D007509 ORTHO05D009525 1.1e-10 70.1 69 53.6
Nitab4.5_0004476g0020 Nicotiana tabacum HOM05D007509 ORTHO05D009525 1.1e-10 70.1 69 50.7
TAR633G0343 Trochodendron aralioides HOM05D007509 ORTHO05D009525 1.1e-10 70.1 40 65.0
CDE08G0025 Ceratophyllum demersum HOM05D007509 ORTHO05D009525 1.5e-10 69.7 50 60.0
Glyma.10G054000 Glycine max HOM05D007509 ORTHO05D009525 2.0e-10 69.3 70 51.4
PGR004G0585 Punica granatum HOM05D007509 ORTHO05D009525 2.0e-10 69.3 64 48.4
Phvul.007G148600 Phaseolus vulgaris HOM05D007509 ORTHO05D009525 3.3e-10 68.6 70 48.6
Gohir.A09G145100 Gossypium hirsutum HOM05D007509 ORTHO05D009525 4.3e-10 68.2 69 52.2
Atru.chr8.1768 Acer truncatum HOM05D007509 ORTHO05D009525 5.7e-10 67.8 53 56.6
Prupe.7G127400 Prunus persica HOM05D007509 ORTHO05D009525 5.7e-10 67.8 67 50.7
Glyma.13G141100 Glycine max HOM05D007509 ORTHO05D009525 7.4e-10 67.4 70 50.0
Gohir.D09G141225 Gossypium hirsutum HOM05D007509 ORTHO05D009525 7.4e-10 67.4 69 50.7
PSO339G5046 Papaver somniferum HOM05D007509 ORTHO05D009525 7.4e-10 67.4 53 54.7
PGSC0003DMG400003867 Solanum tuberosum HOM05D007509 ORTHO05D009525 9.7e-10 67.0 70 47.1
Psat3g041640 Pisum sativum HOM05D007509 ORTHO05D009525 1.3e-09 66.6 67 52.2
Actinidia31324 Actinidia chinensis HOM05D007509 ORTHO05D009525 2.2e-09 65.9 71 49.3
CDE02G4326 Ceratophyllum demersum HOM05D007509 ORTHO05D009525 2.2e-09 65.9 52 55.8
Sopen09g003160 Solanum pennellii HOM05D007509 ORTHO05D009525 2.8e-09 65.5 70 47.1
ATR0723G032 Amborella trichopoda HOM05D007509 ORTHO05D009525 3.7e-09 65.1 39 61.5
Aqoxy2G01711 Aquilegia oxysepala HOM05D007509 ORTHO05D009525 4.8e-09 64.7 72 45.8
EL10Ac4g08317 Beta vulgaris HOM05D007509 ORTHO05D009525 4.8e-09 64.7 45 53.3
HanXRQChr14g0432941 Helianthus annuus HOM05D007509 ORTHO05D009525 6.3e-09 64.3 69 47.8
Potri.006G122600 Populus trichocarpa HOM05D007509 ORTHO05D009525 6.3e-09 64.3 67 44.8
Solyc09g008335.1 Solanum lycopersicum HOM05D007509 ORTHO05D009525 6.3e-09 64.3 70 47.1
AUR62036098 Chenopodium quinoa HOM05D007509 ORTHO05D009525 1.1e-08 63.5 71 39.4
ECA246G0714 Erigeron canadensis HOM05D007509 ORTHO05D009525 1.1e-08 63.5 52 51.9
Peaxi162Scf00722g00034 Petunia axillaris HOM05D007509 ORTHO05D009525 1.4e-08 63.2 83 42.2
C02p01090 Brassica napus HOM05D007509 ORTHO05D009525 1.8e-08 62.8 42 57.1
BolC2t06099H Brassica oleracea HOM05D007509 ORTHO05D009525 1.8e-08 62.8 42 57.1
BraA02t04762Z Brassica rapa HOM05D007509 ORTHO05D009525 1.8e-08 62.8 42 57.1
CANSAT80G0537 Cannabis sativa HOM05D007509 ORTHO05D009525 2.4e-08 62.4 67 44.8
QL07p042864 Quercus lobata HOM05D007509 ORTHO05D009525 3.1e-08 62.0 66 45.5
Aa31LG1G21690 Aethionema arabicum HOM05D007509 ORTHO05D009525 5.3e-08 61.2 41 51.2
CARHR209880 Cardamine hirsuta HOM05D007509 ORTHO05D009525 6.9e-08 60.8 48 52.1
Manes.07G043500 Manihot esculenta HOM05D007509 ORTHO05D009525 6.9e-08 60.8 72 44.4
Carub.0006s0228 Capsella rubella HOM05D007509 ORTHO05D009525 1.2e-07 60.1 40 55.0
AUR62019539 Chenopodium quinoa HOM05D007509 ORTHO05D009525 3.4e-07 58.5 35 54.3
AT5G03460 Arabidopsis thaliana HOM05D007509 ORTHO05D009525 4.5e-07 58.2 40 52.5
C09p73360 Brassica napus HOM05D007509 ORTHO05D009525 4.5e-07 58.2 72 44.4
Oeu056534.1 Olea europaea HOM05D007509 ORTHO05D009525 4.5e-07 58.2 32 65.6
THA.LOC104816357 Tarenaya hassleriana HOM05D007509 ORTHO05D009525 4.5e-07 58.2 67 41.8
Thhalv10015146m.g Eutrema salsugineum HOM05D007509 ORTHO05D009525 5.9e-07 57.8 48 45.8
unitig_0.g681 Utricularia gibba HOM05D007509 ORTHO05D009525 7.7e-07 57.4 41 53.7
BcaC06g32063 Brassica carinata HOM05D007509 ORTHO05D009525 1.0e-06 57.0 72 43.1
A10p32560 Brassica napus HOM05D007509 ORTHO05D009525 1.0e-06 57.0 71 40.8
BolC9t60072H Brassica oleracea HOM05D007509 ORTHO05D009525 1.0e-06 57.0 74 41.9
BraA10t45291Z Brassica rapa HOM05D007509 ORTHO05D009525 1.0e-06 57.0 71 40.8
Sp6g39270 Schrenkiella parvula HOM05D007509 ORTHO05D009525 1.7e-06 56.2 73 42.5
BcaB07g30588 Brassica carinata HOM05D007509 ORTHO05D009525 3.8e-06 55.1 68 41.2
AL6G12840 Arabidopsis lyrata HOM05D007509 ORTHO05D009525 5.0e-06 54.7 39 48.7


User provided reference genes

Program Settings