Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0008507 Sechium edule HOM05D008152 ORTHO05D010231 6.7e-36 153.3 68 100.0
ClCG05G020750 Citrullus lanatus HOM05D008152 ORTHO05D010231 4.5e-24 114.0 67 76.1
Manes.11G003500 Manihot esculenta HOM05D008152 ORTHO05D010231 2.0e-11 72.0 38 71.1
Migut.K00109 Erythranthe guttata HOM05D008152 ORTHO05D010231 1.3e-10 69.3 44 61.4
Ciclev10033235m.g Citrus clementina HOM05D008152 ORTHO05D010231 6.3e-10 67.0 67 55.2
Nn2g14938 Nelumbo nucifera HOM05D008152 ORTHO05D010231 5.4e-09 63.9 35 65.7
Duzib128G1278 Durio zibethinus HOM05D008152 ORTHO05D010231 1.6e-08 62.4 40 62.5
GSVIVG01033573001 Vitis vinifera HOM05D008152 ORTHO05D010231 1.6e-08 62.4 30 73.3
FvH4_6g25100 Fragaria vesca HOM05D008152 ORTHO05D010231 2.0e-08 62.0 35 68.6
Manes.08G056600 Manihot esculenta HOM05D008152 ORTHO05D010231 2.0e-08 62.0 43 58.1
Potri.006G043300 Populus trichocarpa HOM05D008152 ORTHO05D010231 2.7e-08 61.6 37 67.6
Prupe.7G046400 Prunus persica HOM05D008152 ORTHO05D010231 2.7e-08 61.6 34 70.6
Gorai.006G133500 Gossypium raimondii HOM05D008152 ORTHO05D010231 3.5e-08 61.2 45 57.8
COL.COLO4_33936 Corchorus olitorius HOM05D008152 ORTHO05D010231 4.5e-08 60.8 42 59.5
MD00G1073900 Malus domestica HOM05D008152 ORTHO05D010231 4.5e-08 60.8 34 70.6
MD12G1091200 Malus domestica HOM05D008152 ORTHO05D010231 4.5e-08 60.8 34 70.6
Ciclev10006402m.g Citrus clementina HOM05D008152 ORTHO05D010231 5.9e-08 60.5 44 56.8
FAN05G4131 Fragaria x ananassa HOM05D008152 ORTHO05D010231 5.9e-08 60.5 35 65.7
Nn7g36510 Nelumbo nucifera HOM05D008152 ORTHO05D010231 1.0e-07 59.7 29 69.0
CAN.G1237.35 Capsicum annuum HOM05D008152 ORTHO05D010231 1.3e-07 59.3 43 60.5
Gohir.D09G115470 Gossypium hirsutum HOM05D008152 ORTHO05D010231 1.3e-07 59.3 44 56.8
Solyc10g084060.2 Solanum lycopersicum HOM05D008152 ORTHO05D010231 1.3e-07 59.3 42 54.8
Thecc.10G170800 Theobroma cacao HOM05D018277 ORTHO05D020787 1.3e-07 59.3 43 60.5
AL6G13710 Arabidopsis lyrata HOM05D008152 ORTHO05D010231 1.7e-07 58.9 48 54.2
CSS0018961 Camellia sinensis var. sinensis HOM05D008152 ORTHO05D010231 1.7e-07 58.9 29 65.5
RcHm_v2.0_Chr2g0124931 Rosa chinensis HOM05D008152 ORTHO05D010231 1.7e-07 58.9 35 65.7
BcaC06g32113 Brassica carinata HOM05D008152 ORTHO05D010231 5.0e-07 57.4 35 65.7
Carub.0006s0304 Capsella rubella HOM05D008152 ORTHO05D010231 5.0e-07 57.4 47 53.2
CARHR209180 Cardamine hirsuta HOM05D008152 ORTHO05D010231 5.0e-07 57.4 49 53.1
Thhalv10015225m.g Eutrema salsugineum HOM05D008152 ORTHO05D010231 5.0e-07 57.4 39 59.0
FAN09G1661 Fragaria x ananassa HOM05D008152 ORTHO05D010231 5.0e-07 57.4 35 62.9
Gohir.D10G189100 Gossypium hirsutum HOM05D018277 ORTHO05D020787 6.6e-07 57.0 48 56.2
Gorai.011G212400 Gossypium raimondii HOM05D018277 ORTHO05D020787 6.6e-07 57.0 48 56.2
A10p32040 Brassica napus HOM05D008152 ORTHO05D010231 8.6e-07 56.6 35 65.7
C09p72760 Brassica napus HOM05D008152 ORTHO05D010231 8.6e-07 56.6 35 65.7
BolC9t60014H Brassica oleracea HOM05D008152 ORTHO05D010231 8.6e-07 56.6 35 65.7
BraA10t45248Z Brassica rapa HOM05D008152 ORTHO05D010231 8.6e-07 56.6 35 65.7
Gohir.A10G182400 Gossypium hirsutum HOM05D018277 ORTHO05D020787 8.6e-07 56.6 48 56.2
Aa31LG1G21240 Aethionema arabicum HOM05D008152 ORTHO05D010231 1.5e-06 55.8 27 74.1
BolC2t06131H Brassica oleracea HOM05D008152 ORTHO05D010231 1.5e-06 55.8 39 59.0
BcaB01g05765 Brassica carinata HOM05D008152 ORTHO05D010231 1.9e-06 55.5 46 50.0
CiPaw.09G044200 Carya illinoinensis HOM05D008152 ORTHO05D010231 2.5e-06 55.1 43 55.8
Medtr7g090035 Medicago truncatula HOM05D008152 ORTHO05D010231 2.5e-06 55.1 26 73.1
PGR031G3912 Punica granatum HOM05D008152 ORTHO05D010231 2.5e-06 55.1 41 56.1
Nitab4.5_0010323g0030 Nicotiana tabacum HOM05D008152 ORTHO05D010231 3.3e-06 54.7 38 57.9
Phvul.001G124150 Phaseolus vulgaris HOM05D008152 ORTHO05D010231 3.3e-06 54.7 27 70.4
Phvul.001G124600 Phaseolus vulgaris HOM05D008152 ORTHO05D010231 3.3e-06 54.7 27 70.4
A03p01520 Brassica napus HOM05D008152 ORTHO05D010231 4.2e-06 54.3 27 66.7
BraA03t09529Z Brassica rapa HOM05D008152 ORTHO05D010231 4.2e-06 54.3 27 66.7
THA.LOC104816407 Tarenaya hassleriana HOM05D008152 ORTHO05D010231 4.2e-06 54.3 46 54.3
Glyma.03G128700 Glycine max HOM05D008152 ORTHO05D010231 5.5e-06 53.9 26 69.2
Lalb_Chr14g0365951 Lupinus albus HOM05D008152 ORTHO05D010231 5.5e-06 53.9 42 54.8
C03p01870 Brassica napus HOM05D008152 ORTHO05D010231 7.2e-06 53.5 45 44.4
BraA02t04797Z Brassica rapa HOM05D008152 ORTHO05D010231 7.2e-06 53.5 42 54.8
Psat3g078320 Pisum sativum HOM05D008152 ORTHO05D010231 9.5e-06 53.1 26 69.2


User provided reference genes

Program Settings