Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0008504 Sechium edule HOM05D004968 ORTHO05D005922 1.0e-134 483.4 244 100.0
ClCG09G016910 Citrullus lanatus HOM05D004968 ORTHO05D005922 1.7e-113 412.9 246 82.1
CsaV3_2G036400 Cucumis sativus L. HOM05D004968 ORTHO05D005922 2.9e-113 412.1 247 81.8
MELO3C021891.2 Cucumis melo HOM05D004968 ORTHO05D005922 7.8e-111 404.1 247 80.2
Eucgr.F03779 Eucalyptus grandis HOM05D004968 ORTHO05D005922 1.0e-78 297.4 238 60.5
MD10G1078800 Malus domestica HOM05D004968 ORTHO05D005922 5.7e-77 291.6 240 61.2
Prupe.8G100600 Prunus persica HOM05D004968 ORTHO05D005922 5.7e-77 291.6 253 58.1
COL.COLO4_32438 Corchorus olitorius HOM05D004968 ORTHO05D005922 1.8e-75 286.6 239 59.8
CANSAT54G1571 Cannabis sativa HOM05D004968 ORTHO05D005922 2.4e-75 286.2 241 57.3
Potri.004G152800 Populus trichocarpa HOM05D004968 ORTHO05D005922 2.0e-74 283.1 245 56.3
FvH4_2g08440 Fragaria vesca HOM05D004968 ORTHO05D005922 5.9e-74 281.6 256 55.5
QL11p042637 Quercus lobata HOM05D004968 ORTHO05D005922 7.7e-74 281.2 255 56.1
QL11p043149 Quercus lobata HOM05D004968 ORTHO05D005922 7.7e-74 281.2 255 56.5
RcHm_v2.0_Chr6g0263721 Rosa chinensis HOM05D004968 ORTHO05D005922 8.5e-73 277.7 258 54.3
Rhsim05G0075100 Rhododendron simsii HOM05D004968 ORTHO05D005922 1.1e-72 277.3 238 58.8
GSVIVG01031935001 Vitis vinifera HOM05D004968 ORTHO05D005922 1.1e-72 277.3 241 58.1
Gohir.A12G017700 Gossypium hirsutum HOM05D004968 ORTHO05D005922 1.9e-72 276.6 241 58.9
Gohir.D12G018300 Gossypium hirsutum HOM05D004968 ORTHO05D005922 9.4e-72 274.2 241 58.1
PGR119G1160 Punica granatum HOM05D004968 ORTHO05D005922 1.2e-71 273.9 236 55.9
Ciclev10028976m.g Citrus clementina HOM05D004968 ORTHO05D005922 2.1e-71 273.1 241 58.1
Dinv23542 Davidia involucrata HOM05D004968 ORTHO05D005922 4.7e-71 271.9 253 57.3
Thecc.02G124000 Theobroma cacao HOM05D004968 ORTHO05D005922 4.7e-71 271.9 243 56.8
Actinidia17822 Actinidia chinensis HOM05D004968 ORTHO05D005922 2.3e-70 269.6 237 57.0
TWI31G0993 Tripterygium wilfordii HOM05D004968 ORTHO05D005922 1.1e-69 267.3 254 54.3
TWI79G0651 Tripterygium wilfordii HOM05D004968 ORTHO05D005922 1.5e-69 266.9 255 54.5
Gohir.D13G047300 Gossypium hirsutum HOM05D004968 ORTHO05D005922 2.0e-69 266.5 241 58.5
Gorai.008G018600 Gossypium raimondii HOM05D004968 ORTHO05D005922 2.6e-69 266.2 253 55.3
DCAR_022106 Daucus carota HOM05D004968 ORTHO05D005922 3.3e-69 265.8 237 54.9
THA.LOC104818761 Tarenaya hassleriana HOM05D004968 ORTHO05D005922 4.4e-69 265.4 234 55.1
Migut.B00251 Erythranthe guttata HOM05D004968 ORTHO05D005922 5.7e-69 265.0 232 54.3
Ca_24432_v3 Cicer arietinum L. HOM05D004968 ORTHO05D005922 9.7e-69 264.2 237 54.9
Oeu020768.3 Olea europaea HOM05D004968 ORTHO05D005922 2.2e-68 263.1 223 57.0
Cc02_g17750 Coffea canephora HOM05D004968 ORTHO05D005922 4.8e-68 261.9 236 54.7
Lj5C198G20 Lonicera japonica HOM05D004968 ORTHO05D005922 4.8e-68 261.9 231 54.5
TWI75G0648 Tripterygium wilfordii HOM05D004968 ORTHO05D005922 6.3e-68 261.5 254 55.1
Gorai.013G052900 Gossypium raimondii HOM05D004968 ORTHO05D005922 1.1e-67 260.8 242 58.3
Rhsim11G0174600 Rhododendron simsii HOM05D004968 ORTHO05D005922 1.4e-67 260.4 235 55.3
Gohir.A13G048800 Gossypium hirsutum HOM05D004968 ORTHO05D005922 1.8e-67 260.0 242 58.3
THA.LOC104823527 Tarenaya hassleriana HOM05D004968 ORTHO05D005922 2.4e-67 259.6 235 55.3
Lj5g0027841 Lotus japonicus HOM05D004968 ORTHO05D005922 4.1e-67 258.8 241 55.2
MSTRG.16797 Avicennia marina HOM05D004968 ORTHO05D005922 9.1e-67 257.7 233 52.8
TPR.G17161 Trifolium pratense HOM05D004968 ORTHO05D005922 2.0e-66 256.5 238 53.4
Aqoxy2G00255 Aquilegia oxysepala HOM05D004968 ORTHO05D005922 3.4e-66 255.8 241 52.7
Medtr5g007260 Medicago truncatula HOM05D004968 ORTHO05D005922 4.5e-66 255.4 233 53.2
SalBow5G1254 Salvia bowleyana HOM05D004968 ORTHO05D005922 1.7e-65 253.4 230 52.2
Lalb_Chr16g0376541 Lupinus albus HOM05D004968 ORTHO05D005922 5.0e-65 251.9 231 51.9
Manes.15G164800 Manihot esculenta HOM05D004968 ORTHO05D005922 6.5e-65 251.5 243 50.6
MSTRG.17529 Avicennia marina HOM05D004968 ORTHO05D005922 1.1e-64 250.8 232 52.6
Glyma.01G233700 Glycine max HOM05D004968 ORTHO05D005922 1.1e-64 250.8 237 52.7
SalBow6G2079 Salvia bowleyana HOM05D004968 ORTHO05D005922 1.9e-64 250.0 230 51.3
Manes.17G099900 Manihot esculenta HOM05D004968 ORTHO05D005922 2.5e-64 249.6 235 54.9
Psat2g189320 Pisum sativum HOM05D004968 ORTHO05D005922 3.2e-64 249.2 235 51.1
CSS0007217 Camellia sinensis var. sinensis HOM05D004968 ORTHO05D005922 5.5e-64 248.4 255 54.1
Nitab4.5_0000618g0170 Nicotiana tabacum HOM05D004968 ORTHO05D005922 5.5e-64 248.4 232 53.4
Nn5g29559 Nelumbo nucifera HOM05D004968 ORTHO05D005922 7.2e-64 248.1 235 50.6
Hund06225 Selenicereus undatus HOM05D004968 ORTHO05D005922 9.4e-64 247.7 234 51.3
TPR.G37890 Trifolium pratense HOM05D004968 ORTHO05D005922 9.4e-64 247.7 238 51.7
MBI15_g22768_MAGBIO Magnolia biondii HOM05D004968 ORTHO05D005922 1.2e-63 247.3 232 53.9
CiPaw.05G062800 Carya illinoinensis HOM05D004968 ORTHO05D005922 1.6e-63 246.9 191 63.9
AUR62011341 Chenopodium quinoa HOM05D004968 ORTHO05D005922 1.6e-63 246.9 226 53.5
DCAR_028995 Daucus carota HOM05D004968 ORTHO05D005922 2.1e-63 246.5 239 53.1
Nitab4.5_0000959g0010 Nicotiana tabacum HOM05D004968 ORTHO05D005922 2.1e-63 246.5 242 52.9
LjContig00222g0024344 Lotus japonicus HOM05D004968 ORTHO05D005922 8.0e-63 244.6 238 52.1
AUR62032493 Chenopodium quinoa HOM05D004968 ORTHO05D005922 1.4e-62 243.8 226 52.7
Sopen06g020960 Solanum pennellii HOM05D004968 ORTHO05D005922 2.3e-62 243.0 246 51.2
BraA08t35243Z Brassica rapa HOM05D004968 ORTHO05D005922 3.0e-62 242.7 248 50.0
Psat2g154960 Pisum sativum HOM05D004968 ORTHO05D005922 3.9e-62 242.3 238 50.0
PGSC0003DMG400024156 Solanum tuberosum HOM05D004968 ORTHO05D005922 3.9e-62 242.3 247 51.0
EL10Ac9g21742 Beta vulgaris HOM05D004968 ORTHO05D005922 5.2e-62 241.9 239 51.5
A08p33240 Brassica napus HOM05D004968 ORTHO05D005922 1.1e-61 240.7 248 50.0
C08p14950 Brassica napus HOM05D004968 ORTHO05D005922 1.1e-61 240.7 249 49.8
HanXRQChr10g0307261 Helianthus annuus HOM05D004968 ORTHO05D005922 1.5e-61 240.4 230 50.4
BcaB03g13233 Brassica carinata HOM05D004968 ORTHO05D005922 2.0e-61 240.0 249 49.4
BolC8t49124H Brassica oleracea HOM05D004968 ORTHO05D005922 2.6e-61 239.6 249 49.4
CARHR012070 Cardamine hirsuta HOM05D004968 ORTHO05D005922 4.4e-61 238.8 242 48.8
Glyma.11G009100 Glycine max HOM05D004968 ORTHO05D005922 5.7e-61 238.4 239 51.0
Ah.01g019530 Amaranthus hybridus HOM05D004968 ORTHO05D005922 7.4e-61 238.0 227 51.1
Phvul.002G041200 Phaseolus vulgaris HOM05D004968 ORTHO05D005922 7.4e-61 238.0 239 51.5
ECA234G4136 Erigeron canadensis HOM05D004968 ORTHO05D005922 9.7e-61 237.7 236 50.4
BcaB03g13234 Brassica carinata HOM05D004968 ORTHO05D005922 1.3e-60 237.3 248 48.0
AUR62016719 Chenopodium quinoa HOM05D004968 ORTHO05D005922 1.7e-60 236.9 226 51.8
Thhalv10008545m.g Eutrema salsugineum HOM05D004968 ORTHO05D005922 2.2e-60 236.5 239 50.2
Lsat_1_v5_gn_5_117961 Lactuca sativa HOM05D004968 ORTHO05D005922 3.7e-60 235.7 230 50.4
A06p08310 Brassica napus HOM05D004968 ORTHO05D005922 6.3e-60 235.0 240 50.4
Eucgr.L02365 Eucalyptus grandis HOM05D004968 ORTHO05D005922 6.3e-60 235.0 207 56.0
Sc08g0000410 Simmondsia chinensis HOM05D004968 ORTHO05D005922 6.3e-60 235.0 215 54.0
BcaC05g25044 Brassica carinata HOM05D004968 ORTHO05D005922 8.2e-60 234.6 238 50.8
BraA06t24029Z Brassica rapa HOM05D001191 ORTHO05D000979 1.1e-59 234.2 239 50.2
ECA240G2790 Erigeron canadensis HOM05D004968 ORTHO05D005922 1.1e-59 234.2 229 50.2
unitig_60.g25856 Utricularia gibba HOM05D004968 ORTHO05D005922 1.8e-59 233.4 228 48.2
Aqoxy2G00971 Aquilegia oxysepala HOM05D004968 ORTHO05D005922 2.4e-59 233.0 239 49.0
FAN24G2241 Fragaria x ananassa HOM05D004968 ORTHO05D005922 4.1e-59 232.3 226 52.7
Sp1g10370 Schrenkiella parvula HOM05D004968 ORTHO05D005922 4.1e-59 232.3 238 49.6
Aa31LG2G8870 Aethionema arabicum HOM05D004968 ORTHO05D005922 5.3e-59 231.9 238 49.2
Medtr5g007330 Medicago truncatula HOM05D004968 ORTHO05D005922 5.3e-59 231.9 239 50.6
Aqoxy214s001 Aquilegia oxysepala HOM05D004968 ORTHO05D005922 7.0e-59 231.5 233 49.8
AL1G22930 Arabidopsis lyrata HOM05D004968 ORTHO05D005922 7.0e-59 231.5 238 48.7
CAN.G62.20 Capsicum annuum HOM05D004968 ORTHO05D005922 7.0e-59 231.5 250 48.8
Haze_02366 Corylus avellana HOM05D004968 ORTHO05D005922 4.5e-58 228.8 216 53.7
AT1G11755 Arabidopsis thaliana HOM05D004968 ORTHO05D005922 7.7e-58 228.0 238 47.9
Lsat_1_v5_gn_9_109460 Lactuca sativa HOM05D004968 ORTHO05D005922 1.0e-57 227.6 241 46.9
CDE08G1236 Ceratophyllum demersum HOM05D004968 ORTHO05D005922 1.7e-57 226.9 237 48.1
C05p09870 Brassica napus HOM05D001191 ORTHO05D000979 2.2e-57 226.5 247 48.2
BolC5t29726H Brassica oleracea HOM05D001191 ORTHO05D000979 2.2e-57 226.5 247 48.2
Duzib248G0873 Durio zibethinus HOM05D004968 ORTHO05D005922 6.5e-57 224.9 243 50.6
Carub.0001s1141 Capsella rubella HOM05D004968 ORTHO05D005922 1.9e-56 223.4 239 49.0
TAR628G0550 Trochodendron aralioides HOM05D004968 ORTHO05D005922 2.7e-55 219.5 212 52.8
TAR628G1407 Trochodendron aralioides HOM05D004968 ORTHO05D005922 2.7e-55 219.5 212 52.8
PSO210G6272 Papaver somniferum HOM05D004968 ORTHO05D005922 1.8e-54 216.9 248 45.2
Lalb_Chr05g0211211 Lupinus albus HOM05D004968 ORTHO05D005922 2.3e-54 216.5 231 47.6
PSO210G6102 Papaver somniferum HOM05D004968 ORTHO05D005922 6.7e-54 214.9 240 44.6
Zm00001eb008090 Zea mays HOM05D004968 ORTHO05D005922 6.7e-54 214.9 244 47.1
arahy.Tifrunner.gnm1.ann1.GI2C3C Arachis hypogaea HOM05D004968 ORTHO05D005922 8.8e-54 214.5 211 51.2
Peaxi162Scf00190g01218 Petunia axillaris HOM05D004968 ORTHO05D005922 3.3e-53 212.6 211 52.6
Aa31LG1G3000 Aethionema arabicum HOM05D004968 ORTHO05D005922 2.8e-52 209.5 233 46.4
Os03g0197000 Oryza sativa ssp. japonica HOM05D004968 ORTHO05D005922 2.8e-52 209.5 239 46.0
vmacro17503 Vaccinium macrocarpon HOM05D004968 ORTHO05D005922 8.2e-52 208.0 218 51.8
ATR0733G063 Amborella trichopoda HOM05D004968 ORTHO05D005922 2.4e-51 206.5 246 43.5
Os02g0197700 Oryza sativa ssp. japonica HOM05D004968 ORTHO05D005922 2.4e-51 206.5 238 45.4
vmacro17504 Vaccinium macrocarpon HOM05D004968 ORTHO05D005922 9.1e-51 204.5 221 51.1
TAR376G0049 Trochodendron aralioides HOM05D004968 ORTHO05D005922 1.2e-50 204.1 213 50.2
Cpa.g.sc62.129 Carica papaya HOM05D004968 ORTHO05D005922 1.0e-49 201.1 181 56.4
Solyc06g060810.3 Solanum lycopersicum HOM05D004968 ORTHO05D005922 5.0e-49 198.7 247 45.3
Atru.chr5.2990 Acer truncatum HOM05D004968 ORTHO05D005922 5.5e-48 195.3 167 56.9
SHI05416 Sapria himalayana HOM05D004968 ORTHO05D005922 2.7e-47 193.0 215 47.0
Hma1.2p1_1375F.1_g278980 Hydrangea macrophylla HOM05D004968 ORTHO05D005922 1.0e-46 191.0 186 51.1
Hma1.2p1_3179F.1_g333693 Hydrangea macrophylla HOM05D004968 ORTHO05D005922 1.0e-46 191.0 186 51.1
HPP92_024488 Vanilla planifolia HOM05D004968 ORTHO05D005922 1.2e-45 187.6 234 43.2
arahy.Tifrunner.gnm1.ann1.UWQD3U Arachis hypogaea HOM05D004968 ORTHO05D005922 3.4e-45 186.0 217 47.0
SGA_v2.0_scaffold68G22950 Striga asiatica HOM05D004968 ORTHO05D005922 4.8e-44 182.2 257 41.2
HPP92_014277 Vanilla planifolia HOM05D004968 ORTHO05D005922 3.1e-43 179.5 191 47.1
vmacro02126 Vaccinium macrocarpon HOM05D004968 ORTHO05D005922 4.1e-43 179.1 206 47.1
VMungo1309G1500 Vigna mungo HOM05D004968 ORTHO05D005922 5.4e-43 178.7 241 42.3
SEGI_04576 Sequoiadendron giganteum HOM05D004968 ORTHO05D005922 3.6e-39 166.0 245 37.1
HanXRQChr14g0443031 Helianthus annuus HOM05D004968 ORTHO05D005922 6.1e-39 165.2 231 39.8
DCAR_022108 Daucus carota HOM05D004968 ORTHO05D005922 3.6e-31 139.4 105 59.0
Prupe.8G100800 Prunus persica HOM05D004968 ORTHO05D005922 3.6e-31 139.4 152 51.3
VMungo1309G3063 Vigna mungo HOM05D004968 ORTHO05D005922 3.6e-31 139.4 197 41.6
SGA_v2.0_scaffold58G20551 Striga asiatica HOM05D004968 ORTHO05D005922 1.4e-30 137.5 162 46.9
Cc02_g20810 Coffea canephora HOM05D004968 ORTHO05D005922 1.1e-24 117.9 87 60.9
Actinidia26757 Actinidia chinensis HOM05D004968 ORTHO05D005922 6.2e-23 112.1 99 53.5
TPR.G17189 Trifolium pratense HOM05D004968 ORTHO05D005922 1.8e-22 110.5 139 44.6
Hma1.2p1_1375F.1_g278990 Hydrangea macrophylla HOM05D004968 ORTHO05D005922 4.0e-22 109.4 103 48.5
AagrBONN_evm.TU.Sc2ySwM_117.3108 Anthoceros agrestis HOM05D004968 ORTHO05D005922 6.8e-22 108.6 187 34.8
FAN20G2519 Fragaria x ananassa HOM05D004968 ORTHO05D005922 2.9e-20 103.2 86 55.8
Dinv42083 Davidia involucrata HOM05D004968 ORTHO05D005922 4.9e-20 102.4 135 40.7
SMO351G0289 Selaginella moellendorffii HOM05D004968 ORTHO05D005922 3.2e-19 99.8 254 28.7
Lsat_1_v5_gn_0_28960 Lactuca sativa HOM05D004968 ORTHO05D005922 2.3e-17 93.6 74 59.5
Lsat_1_v5_gn_2_61580 Lactuca sativa HOM05D004968 ORTHO05D005922 8.6e-17 91.7 117 44.4
Mapoly0014s0198 Marchantia polymorpha HOM05D004968 ORTHO05D005922 1.9e-16 90.5 148 33.8
Actinidia30740 Actinidia chinensis HOM05D004968 ORTHO05D005922 3.3e-08 63.2 49 59.2


User provided reference genes

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