Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0008500 Sechium edule HOM05D003628 ORTHO05D004253 0.0e+00 1428.7 822 100.0
Sed0002438 Sechium edule HOM05D003628 ORTHO05D004253 1.2e-299 1033.1 834 78.4
CsaV3_2G012280 Cucumis sativus L. HOM05D003628 ORTHO05D004253 7.8e-288 993.8 830 72.4
MELO3C023064.2 Cucumis melo HOM05D003628 ORTHO05D004253 5.8e-283 977.6 830 75.1
ClCG06G007410 Citrullus lanatus HOM05D003628 ORTHO05D004253 2.4e-281 972.2 803 76.2
QL06p022355 Quercus lobata HOM05D003628 ORTHO05D004253 5.6e-137 492.7 834 44.7
Dinv27142 Davidia involucrata HOM05D003628 ORTHO05D004253 3.2e-132 476.9 846 44.2
Manes.15G048200 Manihot esculenta HOM05D003628 ORTHO05D004253 2.1e-131 474.2 831 43.7
Atru.chr4.1847 Acer truncatum HOM05D003628 ORTHO05D004253 2.5e-129 467.2 847 43.9
CiPaw.01G174500 Carya illinoinensis HOM05D003628 ORTHO05D004253 7.4e-129 465.7 835 48.0
Ciclev10004333m.g Citrus clementina HOM05D003628 ORTHO05D004253 1.6e-128 464.5 840 47.4
RcHm_v2.0_Chr4g0396341 Rosa chinensis HOM05D003628 ORTHO05D004253 8.5e-125 452.2 842 46.1
CANSAT78G2050 Cannabis sativa HOM05D003628 ORTHO05D004253 1.1e-121 441.8 832 40.7
Manes.03G155400 Manihot esculenta HOM05D003628 ORTHO05D004253 2.0e-121 441.0 826 42.6
Gorai.011G164000 Gossypium raimondii HOM05D003628 ORTHO05D004253 5.7e-121 439.5 825 41.0
Thecc.04G217100 Theobroma cacao HOM05D003628 ORTHO05D004253 3.7e-120 436.8 824 47.7
Gohir.D10G146700 Gossypium hirsutum HOM05D003628 ORTHO05D004253 2.4e-119 434.1 830 41.4
Potri.010G062000 Populus trichocarpa HOM05D003628 ORTHO05D004253 6.9e-119 432.6 832 41.9
Duzib212G0614 Durio zibethinus HOM05D003628 ORTHO05D004253 9.1e-119 432.2 829 45.4
Hma1.2p1_1241F.1_g269760 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 1.2e-118 431.8 839 41.2
Gohir.A02G025400 Gossypium hirsutum HOM05D003628 ORTHO05D004253 5.9e-118 429.5 826 40.4
Ca_11787_v3 Cicer arietinum L. HOM05D003628 ORTHO05D004253 1.3e-117 428.3 840 40.4
TWI09G0941 Tripterygium wilfordii HOM05D003628 ORTHO05D004253 1.3e-117 428.3 831 40.9
GSVIVG01029001001 Vitis vinifera HOM05D003628 ORTHO05D004253 3.2e-116 423.7 835 42.6
Gorai.005G036000 Gossypium raimondii HOM05D003628 ORTHO05D004253 1.6e-115 421.4 826 40.6
Haze_11526 Corylus avellana HOM05D003628 ORTHO05D004253 3.6e-115 420.2 894 38.3
Actinidia39943 Actinidia chinensis HOM05D003628 ORTHO05D004253 1.8e-114 417.9 837 40.6
Duzib151G0300 Durio zibethinus HOM05D003628 ORTHO05D004253 1.8e-114 417.9 827 45.3
TAR633G2428 Trochodendron aralioides HOM05D003628 ORTHO05D004253 3.9e-114 416.8 852 44.4
FAN22G0313 Fragaria x ananassa HOM05D003628 ORTHO05D004253 5.1e-114 416.4 842 41.1
Prupe.1G054700 Prunus persica HOM05D003628 ORTHO05D004253 1.7e-112 411.4 835 45.4
TWI73G0229 Tripterygium wilfordii HOM05D003628 ORTHO05D004253 1.1e-111 408.7 834 40.2
Gorai.006G218800 Gossypium raimondii HOM05D003628 ORTHO05D004253 4.1e-111 406.8 825 43.8
Lalb_Chr01g0011261 Lupinus albus HOM05D003628 ORTHO05D004253 1.5e-110 404.8 846 39.6
FvH4_4g05311 Fragaria vesca HOM05D003628 ORTHO05D004253 2.6e-110 404.1 847 44.0
TPR.G23641 Trifolium pratense HOM05D003628 ORTHO05D004253 1.0e-109 402.1 842 39.3
Gohir.D02G032600 Gossypium hirsutum HOM05D003628 ORTHO05D004253 6.5e-109 399.4 826 39.2
Phvul.007G238700 Phaseolus vulgaris HOM05D003628 ORTHO05D004253 1.4e-108 398.3 826 45.5
Glyma.20G079600 Glycine max HOM05D003628 ORTHO05D004253 3.2e-108 397.1 840 38.8
Lalb_Chr03g0036821 Lupinus albus HOM05D003628 ORTHO05D004253 5.5e-108 396.4 855 37.9
FAN07G2212 Fragaria x ananassa HOM05D003628 ORTHO05D004253 3.6e-107 393.7 840 43.2
Nn1g03063 Nelumbo nucifera HOM05D003628 ORTHO05D004253 3.0e-106 390.6 857 38.7
Cfa014840 Carpinus fangiana HOM05D003628 ORTHO05D004253 3.9e-106 390.2 827 43.9
TAR365G0848 Trochodendron aralioides HOM05D003628 ORTHO05D004253 5.7e-105 386.3 816 46.1
TAR362G1171 Trochodendron aralioides HOM05D003628 ORTHO05D004253 9.7e-105 385.6 818 40.5
Gohir.D09G195400 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.7e-104 384.8 825 41.7
Lj6g0006649 Lotus japonicus HOM05D003628 ORTHO05D004253 2.8e-104 384.0 803 37.6
Gohir.A09G201200 Gossypium hirsutum HOM05D003628 ORTHO05D004253 4.8e-104 383.3 824 42.2
Dinv29776 Davidia involucrata HOM05D003628 ORTHO05D004253 8.2e-104 382.5 662 47.0
arahy.Tifrunner.gnm1.ann1.STBA65 Arachis hypogaea HOM05D003628 ORTHO05D004253 2.6e-102 377.5 845 37.3
Nitab4.5_0002738g0080 Nicotiana tabacum HOM05D003628 ORTHO05D004253 1.7e-101 374.8 848 38.9
Cc03_g07010 Coffea canephora HOM05D003628 ORTHO05D004253 3.8e-101 373.6 834 40.3
Rhsim02G0049400 Rhododendron simsii HOM05D003628 ORTHO05D004253 6.5e-101 372.9 833 45.1
Lalb_Chr19g0128621 Lupinus albus HOM05D003628 ORTHO05D004253 8.5e-101 372.5 839 39.7
Psat6g109680 Pisum sativum HOM05D003628 ORTHO05D004253 4.2e-100 370.2 845 37.6
CSS0020381 Camellia sinensis var. sinensis HOM05D003628 ORTHO05D004253 7.2e-100 369.4 716 45.8
Eucgr.H00111 Eucalyptus grandis HOM05D003628 ORTHO05D004253 1.6e-99 368.2 833 43.7
Potri.008G174800 Populus trichocarpa HOM05D003628 ORTHO05D004253 6.1e-99 366.3 830 43.4
CiPaw.02G103800 Carya illinoinensis HOM05D003628 ORTHO05D004253 1.4e-98 365.2 422 62.1
CSS0021427 Camellia sinensis var. sinensis HOM05D003628 ORTHO05D004253 2.3e-98 364.4 843 37.7
PGR142G1422 Punica granatum HOM05D003628 ORTHO05D004253 5.2e-98 363.2 837 38.9
Hma1.2p1_0574F.1_g181510 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 6.8e-98 362.8 391 57.8
MBI05_g37047_MAGBIO Magnolia biondii HOM05D003628 ORTHO05D004253 8.8e-98 362.5 846 43.6
Sabra10G0044300 Salix brachista HOM05D006620 ORTHO05D008921 1.5e-97 361.7 785 38.7
arahy.Tifrunner.gnm1.ann1.7KG1FV Arachis hypogaea HOM05D003628 ORTHO05D004253 6.3e-96 356.3 845 36.2
THA.LOC104804570 Tarenaya hassleriana HOM05D003628 ORTHO05D004253 1.4e-95 355.1 828 41.9
Medtr1g046350 Medicago truncatula HOM05D003628 ORTHO05D004253 2.4e-95 354.4 837 35.7
MD16G1232700 Malus domestica HOM05D003628 ORTHO05D004253 2.0e-94 351.3 841 42.1
Peaxi162Scf01007g00014 Petunia axillaris HOM05D003628 ORTHO05D004253 2.0e-94 351.3 846 37.9
Sc19g0002160 Simmondsia chinensis HOM05D003628 ORTHO05D004253 2.9e-93 347.4 821 38.0
Nitab4.5_0000451g0120 Nicotiana tabacum HOM05D003628 ORTHO05D004253 5.0e-93 346.7 840 43.2
MSTRG.4198 Avicennia marina HOM05D003628 ORTHO05D004253 4.2e-92 343.6 836 40.6
Sp3g21980 Schrenkiella parvula HOM05D003628 ORTHO05D004253 8.0e-91 339.3 828 40.9
THA.LOC104821624 Tarenaya hassleriana HOM05D003628 ORTHO05D004253 1.8e-90 338.2 840 36.9
PSO832G4023 Papaver somniferum HOM05D003628 ORTHO05D004253 4.0e-90 337.0 844 37.9
Nitab4.5_0001998g0040 Nicotiana tabacum HOM05D003628 ORTHO05D004253 8.8e-90 335.9 850 37.1
Sabra08G0133300 Salix brachista HOM05D003628 ORTHO05D004253 2.2e-88 331.3 857 36.2
DCAR_027362 Daucus carota HOM05D003628 ORTHO05D004253 3.7e-88 330.5 823 40.9
Solyc09g091120.3 Solanum lycopersicum HOM05D003628 ORTHO05D004253 8.3e-88 329.3 855 41.6
FAN12G2520 Fragaria x ananassa HOM05D003628 ORTHO05D004253 2.4e-87 327.8 1028 33.7
Migut.G00600 Erythranthe guttata HOM05D003628 ORTHO05D004253 2.7e-86 324.3 835 38.8
PSO764G0031 Papaver somniferum HOM05D003628 ORTHO05D004253 2.7e-86 324.3 842 36.9
CAN.G566.2 Capsicum annuum HOM05D003628 ORTHO05D004253 3.5e-86 323.9 834 37.1
Peaxi162Scf00047g00163 Petunia axillaris HOM05D003628 ORTHO05D004253 2.5e-84 317.8 834 40.8
Aa31LG8G10920 Aethionema arabicum HOM05D003628 ORTHO05D004253 7.2e-84 316.2 806 40.8
Solyc12g097070.3 Solanum lycopersicum HOM05D003628 ORTHO05D004253 7.2e-84 316.2 850 36.4
Sopen12g032860 Solanum pennellii HOM05D003628 ORTHO05D004253 7.2e-84 316.2 848 36.0
CAN.G812.46 Capsicum annuum HOM05D003628 ORTHO05D004253 2.1e-83 314.7 828 41.9
BcaB06g26600 Brassica carinata HOM05D003628 ORTHO05D004253 3.6e-83 313.9 586 45.4
vmacro15908 Vaccinium macrocarpon HOM05D003628 ORTHO05D004253 1.8e-82 311.6 844 41.2
EL10Ac3g06305 Beta vulgaris HOM05D003628 ORTHO05D004253 3.0e-82 310.8 836 35.6
ECA234G0302 Erigeron canadensis HOM05D003628 ORTHO05D004253 8.9e-82 309.3 640 47.0
Thhalv10002420m.g Eutrema salsugineum HOM05D003628 ORTHO05D004253 1.2e-81 308.9 828 38.2
AUR62030025 Chenopodium quinoa HOM05D003628 ORTHO05D004253 3.4e-81 307.4 838 35.2
AUR62002607 Chenopodium quinoa HOM05D003628 ORTHO05D004253 4.4e-81 307.0 364 53.0
AL3G39530 Arabidopsis lyrata HOM05D003628 ORTHO05D004253 3.7e-80 303.9 832 38.9
ATR0580G379 Amborella trichopoda HOM05D003628 ORTHO05D004253 7.0e-79 299.7 838 35.9
AT3G23980 Arabidopsis thaliana HOM05D003628 ORTHO05D004253 7.0e-79 299.7 844 39.0
Sopen09g034100 Solanum pennellii HOM05D003628 ORTHO05D004253 7.0e-79 299.7 841 42.3
BcaB04g20394 Brassica carinata HOM05D003628 ORTHO05D004253 7.8e-78 296.2 397 53.7
Carub.0003s2454 Capsella rubella HOM05D003628 ORTHO05D004253 2.9e-77 294.3 834 38.5
BcaB03g14597 Brassica carinata HOM05D003628 ORTHO05D004253 3.9e-77 293.9 621 41.7
Ah.07g204120 Amaranthus hybridus HOM05D003628 ORTHO05D004253 5.0e-77 293.5 630 38.9
BcaC06g35665 Brassica carinata HOM05D003628 ORTHO05D004253 5.6e-76 290.0 675 43.3
HanXRQChr10g0311151 Helianthus annuus HOM05D003628 ORTHO05D004253 1.6e-75 288.5 656 45.9
A03p43510 Brassica napus HOM05D003628 ORTHO05D004253 6.1e-75 286.6 581 48.7
C07p12290 Brassica napus HOM05D003628 ORTHO05D004253 1.0e-74 285.8 650 42.9
C07p12320 Brassica napus HOM05D003628 ORTHO05D004253 1.0e-74 285.8 833 37.2
CDE07G1740 Ceratophyllum demersum HOM05D003628 ORTHO05D004253 1.0e-74 285.8 844 38.7
HPP92_014197 Vanilla planifolia HOM05D003628 ORTHO05D004253 3.1e-74 284.3 856 40.5
VMungo0720G2372 Vigna mungo HOM05D003628 ORTHO05D004253 3.1e-74 284.3 806 34.6
BolC7t41696H Brassica oleracea HOM05D003628 ORTHO05D004253 4.0e-74 283.9 686 42.1
HanXRQChr12g0359881 Helianthus annuus HOM05D003628 ORTHO05D004253 3.4e-73 280.8 587 48.0
Lsat_1_v5_gn_5_148361 Lactuca sativa HOM05D003628 ORTHO05D004253 3.4e-73 280.8 552 51.1
A07p08160 Brassica napus HOM05D003628 ORTHO05D004253 2.9e-72 277.7 741 40.5
BraA07t28601Z Brassica rapa HOM05D003628 ORTHO05D004253 1.1e-71 275.8 754 35.1
unitig_748.g7341 Utricularia gibba HOM05D003628 ORTHO05D004253 1.4e-71 275.4 628 36.5
BraA03t13490Z Brassica rapa HOM05D003628 ORTHO05D004253 1.9e-71 275.0 828 39.9
HPP92_026454 Vanilla planifolia HOM05D003628 ORTHO05D004253 1.9e-71 275.0 502 52.8
Cpa.g.sc59.57 Carica papaya HOM05D003628 ORTHO05D004253 6.0e-70 270.0 680 38.8
SGA_v2.0_scaffold57G20181 Striga asiatica HOM05D003628 ORTHO05D004253 9.5e-68 262.7 809 33.9
Zm00001eb143670 Zea mays HOM05D003628 ORTHO05D004253 1.2e-67 262.3 845 36.0
Lj3A630T50 Lonicera japonica HOM05D003628 ORTHO05D004253 7.5e-65 253.1 746 38.3
Os01g0911800 Oryza sativa ssp. japonica HOM05D003628 ORTHO05D004253 9.8e-65 252.7 571 42.0
CARHR100260 Cardamine hirsuta HOM05D003628 ORTHO05D004253 6.4e-64 250.0 832 36.8
BcaC06g35667 Brassica carinata HOM05D003628 ORTHO05D004253 3.5e-62 244.2 617 41.2
BcaC01g03342 Brassica carinata HOM05D003628 ORTHO05D004253 4.6e-62 243.8 361 57.3
Glyma.10G128350 Glycine max HOM05D003628 ORTHO05D004253 2.3e-61 241.5 298 52.7
Zm00001eb365010 Zea mays HOM05D003628 ORTHO05D004253 2.3e-61 241.5 852 34.0
BolC3t17608H Brassica oleracea HOM05D003628 ORTHO05D004253 1.2e-57 229.2 353 53.5
C03p53470 Brassica napus HOM05D003628 ORTHO05D004253 2.2e-56 224.9 350 52.9
Aqoxy1G00125 Aquilegia oxysepala HOM05D003628 ORTHO05D004253 6.0e-54 216.9 853 36.3
Hund12227 Selenicereus undatus HOM05D003628 ORTHO05D004253 4.3e-44 184.1 600 33.5
Nn3g19840 Nelumbo nucifera HOM05D003628 ORTHO05D004253 3.6e-43 181.0 840 28.7
CDE04G0520 Ceratophyllum demersum HOM05D003628 ORTHO05D004253 4.9e-40 170.6 333 52.6
Nitab4.5_0003287g0020 Nicotiana tabacum HOM05D003628 ORTHO05D004253 1.7e-37 162.2 605 32.2
Oeu012942.2 Olea europaea HOM05D003628 ORTHO05D004253 1.5e-36 159.1 165 60.6
Oeu023151.1 Olea europaea HOM05D003628 ORTHO05D004253 7.6e-33 146.7 114 69.3
MD13G1227500 Malus domestica HOM05D003628 ORTHO05D004253 3.2e-31 141.4 100 74.0
AagrBONN_evm.TU.Sc2ySwM_362.1684 Anthoceros agrestis HOM05D003628 ORTHO05D004253 7.1e-31 140.2 429 31.7
Lj6A641G44 Lonicera japonica HOM05D003628 ORTHO05D004253 4.6e-30 137.5 690 29.7
SEGI_10173 Sequoiadendron giganteum HOM05D003628 ORTHO05D004253 1.5e-28 132.5 388 45.9
SMO116G0337 Selaginella moellendorffii HOM05D003628 ORTHO05D004253 1.3e-27 129.4 408 37.0
Cpa.g.sc59.56 Carica papaya HOM05D003628 ORTHO05D004253 3.7e-27 127.9 134 57.5
Glyma.10G128300 Glycine max HOM05D003628 ORTHO05D004253 9.0e-26 123.2 486 29.6
Mapoly0068s0063 Marchantia polymorpha HOM05D003628 ORTHO05D004253 2.0e-25 122.1 414 30.9
Pp3c20_15710 Physcomitrium patens HOM05D003628 ORTHO05D004253 2.0e-25 122.1 426 29.1
CBR_g38414 Chara braunii HOM05D003628 ORTHO05D004253 1.1e-23 116.3 384 32.3
Actinidia11385 Actinidia chinensis HOM05D003628 ORTHO05D004253 5.5e-23 114.0 93 68.8
Pp3c24_10590 Physcomitrium patens HOM05D003628 ORTHO05D004253 2.7e-22 111.7 420 27.6
Hma1.2p1_0112F.1_g055040 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 4.6e-22 110.9 176 48.9
Gohir.D09G057732 Gossypium hirsutum HOM05D003628 ORTHO05D004253 2.4e-18 98.6 68 77.9
Gohir.D04G116566 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.3e-16 92.8 66 74.2
Hma1.2p1_0112F.1_g055050 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 2.9e-16 91.7 62 79.0
Hund12233 Selenicereus undatus HOM05D003628 ORTHO05D004253 2.7e-14 85.1 80 57.5
Oeu023150.1 Olea europaea HOM05D003628 ORTHO05D004253 3.0e-13 81.6 56 73.2
Actinidia11386 Actinidia chinensis HOM05D003628 ORTHO05D004253 6.7e-13 80.5 551 25.2
Pp3c23_8100 Physcomitrium patens HOM05D003628 ORTHO05D004253 6.7e-13 80.5 448 24.8
Gohir.D08G165950 Gossypium hirsutum HOM05D003628 ORTHO05D004253 3.7e-11 74.7 49 79.6
Gorai.013G043600 Gossypium raimondii HOM05D003628 ORTHO05D004253 1.1e-10 73.2 49 77.6
PGSC0003DMG402011586 Solanum tuberosum HOM05D003628 ORTHO05D004253 3.4e-09 68.2 63 61.9
AL2G14740 Arabidopsis lyrata HOM05D000013 ORTHO05D000011 2.9e-08 65.1 58 56.9
Gohir.D01G060866 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.4e-07 62.8 38 81.6
Ah.14g082010 Amaranthus hybridus HOM05D003628 ORTHO05D004253 2.5e-07 62.0 38 81.6
Gohir.D11G226200 Gossypium hirsutum HOM05D003628 ORTHO05D004253 3.2e-07 61.6 38 78.9
Gorai.007G071000 Gossypium raimondii HOM05D003628 ORTHO05D004253 3.2e-07 61.6 39 79.5
Gohir.A11G239380 Gossypium hirsutum HOM05D003628 ORTHO05D004253 4.2e-07 61.2 38 78.9
CDE04G1765 Ceratophyllum demersum HOM05D003628 ORTHO05D004253 9.4e-07 60.1 239 29.7
Gorai.007G244100 Gossypium raimondii HOM05D003628 ORTHO05D004253 9.4e-07 60.1 38 76.3
Gohir.D08G175500 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.2e-06 59.7 38 76.3
Gorai.009G342200 Gossypium raimondii HOM05D003628 ORTHO05D016264 1.6e-06 59.3 36 80.6
Gohir.D06G084232 Gossypium hirsutum HOM05D003628 ORTHO05D016264 4.6e-06 57.8 36 77.8
Gohir.D03G086101 Gossypium hirsutum HOM05D003628 ORTHO05D004253 6.1e-06 57.4 46 65.2
Gohir.D04G051401 Gossypium hirsutum HOM05D003628 ORTHO05D004253 6.1e-06 57.4 52 63.5
Gohir.D01G077750 Gossypium hirsutum HOM05D003628 ORTHO05D004253 7.9e-06 57.0 38 73.7


User provided reference genes

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