Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0008469 Sechium edule HOM05D004932 ORTHO05D005622 8.5e-126 453.8 239 100.0
MELO3C015448.2 Cucumis melo HOM05D004932 ORTHO05D005622 8.8e-107 390.6 236 86.4
CsaV3_1G040210 Cucumis sativus L. HOM05D004932 ORTHO05D005622 2.6e-103 379.0 237 85.2
CsaV3_UNG060480 Cucumis sativus L. HOM05D004932 ORTHO05D005622 2.6e-103 379.0 237 85.2
ClCG03G015800 Citrullus lanatus HOM05D004932 ORTHO05D005622 5.2e-99 364.8 236 82.2
CANSAT56G0365 Cannabis sativa HOM05D004932 ORTHO05D005622 1.6e-95 353.2 221 78.3
MD15G1203900 Malus domestica HOM05D004932 ORTHO05D005622 1.7e-94 349.7 222 78.4
CiPaw.03G218800 Carya illinoinensis HOM05D004932 ORTHO05D005622 3.2e-93 345.5 238 78.2
Lj2g0005770 Lotus japonicus HOM05D004932 ORTHO05D005622 3.2e-93 345.5 214 80.8
FvH4_1g07000 Fragaria vesca HOM05D004932 ORTHO05D005622 1.2e-92 343.6 234 73.9
FAN26G1352 Fragaria x ananassa HOM05D004932 ORTHO05D005622 2.7e-92 342.4 232 78.0
FAN26G3436 Fragaria x ananassa HOM05D004932 ORTHO05D005622 2.7e-92 342.4 232 78.0
Lalb_Chr24g0393881 Lupinus albus HOM05D004932 ORTHO05D005622 3.6e-92 342.0 221 76.0
FAN19G2121 Fragaria x ananassa HOM05D004932 ORTHO05D005622 6.1e-92 341.3 215 79.1
FAN23G2709 Fragaria x ananassa HOM05D004932 ORTHO05D005622 6.1e-92 341.3 215 79.1
FAN28G1050 Fragaria x ananassa HOM05D004932 ORTHO05D005622 6.1e-92 341.3 215 79.1
MSTRG.10579 Avicennia marina HOM05D004932 ORTHO05D005622 1.0e-91 340.5 234 74.4
arahy.Tifrunner.gnm1.ann1.NAI4LE Arachis hypogaea HOM05D004932 ORTHO05D005622 1.4e-91 340.1 222 77.0
Glyma.07G128200 Glycine max HOM05D004932 ORTHO05D005622 2.3e-91 339.3 222 77.9
Medtr6g091780 Medicago truncatula HOM05D004932 ORTHO05D005622 4.0e-91 338.6 216 78.2
Dinv42295 Davidia involucrata HOM05D004932 ORTHO05D005622 5.2e-91 338.2 241 71.8
arahy.Tifrunner.gnm1.ann1.RRYY0T Arachis hypogaea HOM05D004932 ORTHO05D005622 1.5e-90 336.7 222 76.1
Eucgr.C00917 Eucalyptus grandis HOM05D004932 ORTHO05D005622 2.0e-90 336.3 229 73.8
QL02p063162 Quercus lobata HOM05D004932 ORTHO05D005622 2.0e-90 336.3 231 77.5
Duzib168G1170 Durio zibethinus HOM05D004932 ORTHO05D005622 4.4e-90 335.1 235 73.2
Ca_25616_v3 Cicer arietinum L. HOM05D004932 ORTHO05D005622 1.7e-89 333.2 216 77.3
Duzib150G0148 Durio zibethinus HOM05D004932 ORTHO05D005622 2.2e-89 332.8 217 74.7
Dinv36742 Davidia involucrata HOM05D004932 ORTHO05D005622 4.8e-89 331.6 212 76.9
Oeu000325.1 Olea europaea HOM05D001440 ORTHO05D005622 8.3e-89 330.9 218 74.3
SalBow1G2721 Salvia bowleyana HOM05D004932 ORTHO05D005622 1.1e-88 330.5 234 70.5
Lalb_Chr14g0375311 Lupinus albus HOM05D004932 ORTHO05D005622 1.8e-88 329.7 238 70.6
GSVIVG01015235001 Vitis vinifera HOM05D004932 ORTHO05D005622 2.4e-88 329.3 237 73.0
Gohir.D07G010400 Gossypium hirsutum HOM05D004932 ORTHO05D005622 4.1e-88 328.6 233 72.5
Gorai.001G010800 Gossypium raimondii HOM05D004932 ORTHO05D005622 4.1e-88 328.6 233 72.5
Hma1.2p1_0798F.1_g219580 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 1.2e-87 327.0 241 69.7
CAN.G1837.4 Capsicum annuum HOM05D004932 ORTHO05D005622 3.5e-87 325.5 218 72.0
Nn6g35421 Nelumbo nucifera HOM05D004932 ORTHO05D005622 3.5e-87 325.5 212 73.6
Nitab4.5_0007297g0010 Nicotiana tabacum HOM05D004932 ORTHO05D005622 4.5e-87 325.1 233 70.8
Sc18g0001850 Simmondsia chinensis HOM05D004932 ORTHO05D005622 4.5e-87 325.1 219 69.9
Haze_25884 Corylus avellana HOM05D004932 ORTHO05D005622 1.0e-86 323.9 218 76.1
PGSC0003DMG400008434 Solanum tuberosum HOM05D004932 ORTHO05D005622 1.0e-86 323.9 230 73.5
PGR142G3354 Punica granatum HOM05D004932 ORTHO05D005622 1.3e-86 323.6 218 70.2
TWI63G1476 Tripterygium wilfordii HOM05D004932 ORTHO05D005622 2.9e-86 322.4 222 70.3
Gohir.A07G010100 Gossypium hirsutum HOM05D004932 ORTHO05D005622 6.5e-86 321.2 233 71.2
MD02G1074400 Malus domestica HOM05D004932 ORTHO05D005622 8.6e-86 320.9 219 74.9
Lj7C672T15 Lonicera japonica HOM05D004932 ORTHO05D005622 1.1e-85 320.5 233 73.0
Nitab4.5_0000713g0230 Nicotiana tabacum HOM05D004932 ORTHO05D005622 4.2e-85 318.5 233 70.0
VMungo0464G1844 Vigna mungo HOM05D004932 ORTHO05D005622 5.5e-85 318.2 221 73.3
EL10Ac8g19275 Beta vulgaris HOM05D004932 ORTHO05D005622 7.2e-85 317.8 218 67.9
Prupe.7G213500 Prunus persica HOM05D004932 ORTHO05D005622 9.5e-85 317.4 221 74.2
Thecc.09G093000 Theobroma cacao HOM05D004932 ORTHO05D005622 9.5e-85 317.4 239 70.7
ATR0789G094 Amborella trichopoda HOM05D004932 ORTHO05D005622 3.6e-84 315.5 229 65.9
Actinidia29889 Actinidia chinensis HOM05D004932 ORTHO05D005622 6.1e-84 314.7 215 72.1
Solyc07g032250.4 Solanum lycopersicum HOM05D004932 ORTHO05D005622 6.1e-84 314.7 229 72.1
Glyma.01G003700 Glycine max HOM05D004932 ORTHO05D005622 1.0e-83 313.9 214 75.2
Sopen07g015910 Solanum pennellii HOM05D004932 ORTHO05D005622 1.0e-83 313.9 229 72.1
Manes.14G155500 Manihot esculenta HOM05D004932 ORTHO05D005622 1.8e-83 313.2 237 68.4
Manes.16G104000 Manihot esculenta HOM05D004932 ORTHO05D005622 2.0e-82 309.7 222 66.7
Aqoxy7G01262 Aquilegia oxysepala HOM05D004932 ORTHO05D005622 3.4e-82 308.9 235 66.0
unitig_749.g14227 Utricularia gibba HOM05D004932 ORTHO05D005622 3.4e-82 308.9 227 67.8
Cc06_g11080 Coffea canephora HOM05D004932 ORTHO05D005622 9.8e-82 307.4 229 72.1
Medtr6g090810 Medicago truncatula HOM05D004932 ORTHO05D005622 1.1e-80 303.9 216 72.7
THA.LOC104814605 Tarenaya hassleriana HOM05D004932 ORTHO05D005622 5.4e-80 301.6 238 66.8
Psat1g049760 Pisum sativum HOM05D004932 ORTHO05D005622 9.2e-80 300.8 239 69.5
Phvul.004G172100 Phaseolus vulgaris HOM05D004932 ORTHO05D005622 1.2e-79 300.4 206 72.3
CSS0009775 Camellia sinensis var. sinensis HOM05D004932 ORTHO05D005622 2.0e-79 299.7 225 68.0
PSO210G2479 Papaver somniferum HOM05D004932 ORTHO05D005622 2.0e-79 299.7 232 69.0
C01p09950 Brassica napus HOM05D004932 ORTHO05D005622 2.7e-79 299.3 242 64.9
BolC1t00957H Brassica oleracea HOM05D004932 ORTHO05D005622 2.7e-79 299.3 242 64.9
Atru.chr7.1544 Acer truncatum HOM05D004932 ORTHO05D005622 4.5e-79 298.5 221 67.9
TPR.G35493 Trifolium pratense HOM05D004932 ORTHO05D005622 7.8e-79 297.7 207 74.9
A01p08520 Brassica napus HOM05D004932 ORTHO05D005622 1.0e-78 297.4 240 62.5
A08p19620 Brassica napus HOM05D004932 ORTHO05D005622 1.3e-78 297.0 239 65.7
BraA08t33920Z Brassica rapa HOM05D004932 ORTHO05D005622 1.3e-78 297.0 239 65.7
ECA234G2984 Erigeron canadensis HOM05D004932 ORTHO05D005622 1.3e-78 297.0 216 69.9
Peaxi162Scf00444g00617 Petunia axillaris HOM05D004932 ORTHO05D005622 2.3e-78 296.2 193 74.6
Potri.018G067300 Populus trichocarpa HOM05D004932 ORTHO05D005622 2.3e-78 296.2 234 65.8
C03p89240 Brassica napus HOM05D004932 ORTHO05D005622 3.8e-78 295.4 248 64.1
RcHm_v2.0_Chr2g0092951 Rosa chinensis HOM05D004932 ORTHO05D005622 6.6e-78 294.7 205 74.6
BcaC09g51740 Brassica carinata HOM05D004932 ORTHO05D005622 8.6e-78 294.3 239 65.3
BolC3t21234H Brassica oleracea HOM05D004932 ORTHO05D005622 1.1e-77 293.9 248 63.7
BcaC01g01175 Brassica carinata HOM05D004932 ORTHO05D005622 1.5e-77 293.5 248 63.7
COL.COLO4_18228 Corchorus olitorius HOM05D004932 ORTHO05D005622 2.5e-77 292.7 235 66.4
Thhalv10025804m.g Eutrema salsugineum HOM05D004932 ORTHO05D005622 4.3e-77 292.0 224 64.7
Sabra18G0059800 Salix brachista HOM05D004932 ORTHO05D005622 5.6e-77 291.6 232 65.1
SEGI_24488 Sequoiadendron giganteum HOM05D004932 ORTHO05D005622 7.3e-77 291.2 221 63.3
AT4G29520 Arabidopsis thaliana HOM05D004932 ORTHO05D005622 2.1e-76 289.7 238 64.3
arahy.Tifrunner.gnm1.ann1.E8KE86 Arachis hypogaea HOM05D004932 ORTHO05D005622 2.1e-76 289.7 222 68.5
CDE05G0556 Ceratophyllum demersum HOM05D004932 ORTHO05D005622 2.1e-76 289.7 234 64.1
TAR365G0154 Trochodendron aralioides HOM05D004932 ORTHO05D005622 2.1e-76 289.7 210 68.1
BcaB03g12610 Brassica carinata HOM05D004932 ORTHO05D005622 2.8e-76 289.3 239 65.3
Carub.0007s1103 Capsella rubella HOM05D004932 ORTHO05D005622 2.8e-76 289.3 217 67.7
AL7G22880 Arabidopsis lyrata HOM05D004932 ORTHO05D005622 8.0e-76 287.7 238 64.3
BraA01t00801Z Brassica rapa HOM05D004932 ORTHO05D005622 8.0e-76 287.7 248 59.7
CDE05G1139 Ceratophyllum demersum HOM05D004932 ORTHO05D005622 8.0e-76 287.7 232 64.7
Medtr6g092180 Medicago truncatula HOM05D004932 ORTHO05D005622 4.0e-75 285.4 216 69.4
DCAR_011989 Daucus carota HOM05D004932 ORTHO05D005622 8.9e-75 284.3 213 69.0
vmacro06275 Vaccinium macrocarpon HOM05D004932 ORTHO05D005622 8.9e-75 284.3 188 73.9
arahy.Tifrunner.gnm1.ann1.XF40UC Arachis hypogaea HOM05D004932 ORTHO05D005622 2.0e-74 283.1 213 67.6
PSO210G4737 Papaver somniferum HOM05D004932 ORTHO05D005622 2.0e-74 283.1 218 67.0
Ciclev10009015m.g Citrus clementina HOM05D004932 ORTHO05D005622 4.4e-74 282.0 186 74.2
Cpa.g.sc7.248 Carica papaya HOM05D004932 ORTHO05D005622 1.3e-73 280.4 234 65.0
Os06g0150400 Oryza sativa ssp. japonica HOM05D004932 ORTHO05D005622 1.3e-73 280.4 216 68.1
AUR62031253 Chenopodium quinoa HOM05D004932 ORTHO05D005622 8.3e-73 277.7 193 66.8
AUR62027447 Chenopodium quinoa HOM05D004932 ORTHO05D005622 1.1e-72 277.3 193 67.4
HanXRQChr10g0319131 Helianthus annuus HOM05D004932 ORTHO05D005622 1.4e-72 276.9 214 68.2
Medtr6g092150 Medicago truncatula HOM05D004932 ORTHO05D005622 3.2e-72 275.8 211 67.3
HPP92_004560 Vanilla planifolia HOM05D004932 ORTHO05D005622 9.2e-72 274.2 214 60.3
Zm00001eb376850 Zea mays HOM05D004932 ORTHO05D005622 1.2e-71 273.9 236 61.4
Ah.09g228480 Amaranthus hybridus HOM05D004932 ORTHO05D005622 1.6e-71 273.5 193 67.9
Rhsim03G0234400 Rhododendron simsii HOM05D004932 ORTHO05D005622 3.5e-71 272.3 177 73.4
Lsat_1_v5_gn_5_145840 Lactuca sativa HOM05D004932 ORTHO05D005622 7.8e-71 271.2 212 66.5
Sp7g27380 Schrenkiella parvula HOM05D004932 ORTHO05D005622 3.0e-70 269.2 215 63.3
CARHR237350 Cardamine hirsuta HOM05D004932 ORTHO05D005622 7.3e-69 264.6 209 64.1
Migut.K00580 Erythranthe guttata HOM05D004932 ORTHO05D005622 9.5e-69 264.2 233 62.7
unitig_78.g29619 Utricularia gibba HOM05D004932 ORTHO05D005622 5.2e-67 258.5 213 62.4
SGA_v2.0_scaffold10G05207 Striga asiatica HOM05D004932 ORTHO05D005622 1.5e-66 256.9 277 53.4
Aa31LG2G20960 Aethionema arabicum HOM05D004932 ORTHO05D005622 3.4e-66 255.8 191 66.5
Pp3c4_19450 Physcomitrium patens HOM05D004932 ORTHO05D005622 6.2e-60 235.0 213 55.9
Mapoly0075s0048 Marchantia polymorpha HOM05D004932 ORTHO05D005622 1.1e-59 234.2 217 53.9
arahy.Tifrunner.gnm1.ann1.GR1INA Arachis hypogaea HOM05D004932 ORTHO05D005622 1.5e-58 230.3 186 65.6
Cfa003116 Carpinus fangiana HOM05D004932 ORTHO05D005622 2.0e-58 229.9 145 80.0
SHI02816 Sapria himalayana HOM05D004932 ORTHO05D005622 1.3e-57 227.3 222 54.5
AagrBONN_evm.TU.Sc2ySwM_362.2022 Anthoceros agrestis HOM05D004932 ORTHO05D005622 3.9e-54 215.7 209 53.6
SMO361G0136 Selaginella moellendorffii HOM05D004932 ORTHO05D005622 1.9e-48 196.8 201 47.8
HanXRQChr12g0355371 Helianthus annuus HOM05D004932 ORTHO05D005622 6.2e-44 181.8 228 51.3
CBR_g8029 Chara braunii HOM05D004932 ORTHO05D005622 4.0e-43 179.1 182 48.4
arahy.Tifrunner.gnm1.ann1.Y4MEFZ Arachis hypogaea HOM05D004932 ORTHO05D005622 1.4e-35 154.1 99 76.8
unitig_26.g9168 Utricularia gibba HOM05D004932 ORTHO05D005622 5.4e-32 142.1 131 56.5
Oeu037599.1 Olea europaea HOM05D004932 ORTHO05D005622 1.4e-27 127.5 213 40.8
Cc06_g18040 Coffea canephora HOM05D004932 ORTHO05D005622 2.2e-25 120.2 137 48.9
PRCOL_00005979 Prasinoderma coloniale HOM05D004932 ORTHO05D005622 1.4e-24 117.5 197 33.5
MCO04G519 Micromonas commoda HOM05D004932 ORTHO05D005622 9.3e-24 114.8 168 36.3
arahy.Tifrunner.gnm1.ann1.XYZ5FS Arachis hypogaea HOM05D004932 ORTHO05D005622 3.5e-23 112.8 68 75.0
Hma1.2p1_1586F.1_g292210 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 3.5e-23 112.8 66 75.8
Cre03.g151700 Chlamydomonas reinhardtii HOM05D004932 ORTHO05D005622 1.9e-21 107.1 190 35.8
RcHm_v2.0_Chr5g0016971 Rosa chinensis HOM05D004932 ORTHO05D005622 1.6e-20 104.0 64 78.1
RcHm_v2.0_Chr4g0402141 Rosa chinensis HOM05D004932 ORTHO05D005622 6.2e-20 102.1 62 79.0
Hma1.2p1_1881F.1_g306380 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 2.9e-17 93.2 75 60.0
CiPaw.05G072200 Carya illinoinensis HOM05D004932 ORTHO05D005622 2.7e-15 86.7 50 80.0
CARHR109770 Cardamine hirsuta HOM05D004932 ORTHO05D005622 1.6e-12 77.4 125 42.4
Nn3g21874 Nelumbo nucifera HOM05D004932 ORTHO05D005622 2.2e-12 77.0 45 73.3
Nn2g13205 Nelumbo nucifera HOM05D004932 ORTHO05D005622 4.8e-12 75.9 45 73.3
Hma1.2p1_0798F.1_g219570 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 2.4e-11 73.6 69 65.2
Hma1.2p1_1074F.1_g254276 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 2.4e-11 73.6 69 65.2
arahy.Tifrunner.gnm1.ann1.P1T2M1 Arachis hypogaea HOM05D000368 ORTHO05D000289 7.7e-10 68.6 39 79.5
TAR636G2165 Trochodendron aralioides HOM05D004932 ORTHO05D005622 1.0e-09 68.2 54 55.6
Medtr6g077350 Medicago truncatula HOM05D004932 ORTHO05D005622 2.7e-07 60.1 43 62.8


User provided reference genes

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