Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0008456 Sechium edule HOM05D003355 ORTHO05D006192 1.5e-184 649.4 333 100.0
Sed0012728 Sechium edule HOM05D003355 ORTHO05D006192 3.8e-124 448.7 317 79.2
ClCG09G022570 Citrullus lanatus HOM05D003355 ORTHO05D006192 3.4e-109 399.1 317 70.7
CsaV3_7G022720 Cucumis sativus L. HOM05D003355 ORTHO05D006192 1.3e-108 397.1 317 70.7
Cpa.g.sc5.209 Carica papaya HOM05D003355 ORTHO05D006192 8.8e-97 357.8 317 64.7
EL10Ac3g07470 Beta vulgaris HOM05D003355 ORTHO05D006192 5.7e-96 355.1 325 60.6
EL10Ac2g03332 Beta vulgaris HOM05D003355 ORTHO05D006192 1.3e-95 354.0 318 61.6
Eucgr.F01461 Eucalyptus grandis HOM05D003355 ORTHO05D006192 2.2e-95 353.2 317 60.9
Atru.chr3.4019 Acer truncatum HOM05D003355 ORTHO05D006192 1.4e-94 350.5 316 62.3
TWI60G1544 Tripterygium wilfordii HOM05D003355 ORTHO05D006192 3.1e-94 349.4 314 62.1
Rhsim10G0069800 Rhododendron simsii HOM05D003355 ORTHO05D006192 7.0e-94 348.2 328 60.1
Ah.04g164110 Amaranthus hybridus HOM05D003355 ORTHO05D006192 1.2e-93 347.4 314 59.9
arahy.Tifrunner.gnm1.ann1.WNI1ZF Arachis hypogaea HOM05D003355 ORTHO05D006192 3.5e-93 345.9 318 61.6
Medtr5g087520 Medicago truncatula HOM05D003355 ORTHO05D006192 3.5e-93 345.9 317 61.2
arahy.Tifrunner.gnm1.ann1.A7H436 Arachis hypogaea HOM05D003355 ORTHO05D006192 4.5e-93 345.5 318 61.6
Oeu052000.3 Olea europaea HOM05D003355 ORTHO05D006192 5.9e-93 345.1 315 61.3
MD16G1045100 Malus domestica HOM05D003355 ORTHO05D006192 7.7e-93 344.7 315 60.3
CANSAT78G0728 Cannabis sativa HOM05D003355 ORTHO05D006192 5.0e-92 342.0 314 60.2
Hma1.2p1_0334F.1_g128710 Hydrangea macrophylla HOM05D003355 ORTHO05D006192 6.5e-92 341.7 316 61.1
LjContig00564g0020908 Lotus japonicus HOM05D003355 ORTHO05D006192 6.5e-92 341.7 317 61.2
MD13G1044300 Malus domestica HOM05D003355 ORTHO05D006192 6.5e-92 341.7 315 60.0
Nn8g39637 Nelumbo nucifera HOM05D003355 ORTHO05D006192 1.1e-91 340.9 316 59.8
Hund05007 Selenicereus undatus HOM05D003355 ORTHO05D006192 1.5e-91 340.5 316 60.4
Thecc.09G244300 Theobroma cacao HOM05D003355 ORTHO05D006192 1.5e-91 340.5 315 60.3
MELO3C012627.2 Cucumis melo HOM05D003355 ORTHO05D006192 1.9e-91 340.1 318 64.5
vmacro11671 Vaccinium macrocarpon HOM05D003355 ORTHO05D006192 1.9e-91 340.1 316 60.8
CSS0050028 Camellia sinensis var. sinensis HOM05D003355 ORTHO05D006192 2.5e-91 339.7 314 60.5
ECA240G2766 Erigeron canadensis HOM05D003355 ORTHO05D006192 2.5e-91 339.7 316 59.5
Duzib150G0383 Durio zibethinus HOM05D003355 ORTHO05D006192 3.2e-91 339.3 302 61.9
SGA_v2.0_scaffold186G40213 Striga asiatica HOM05D003355 ORTHO05D006192 3.2e-91 339.3 315 61.0
Ca_06141_v3 Cicer arietinum L. HOM05D003355 ORTHO05D006192 7.2e-91 338.2 313 60.4
Duzib170G1171 Durio zibethinus HOM05D003355 ORTHO05D006192 7.2e-91 338.2 315 60.3
TPR.G15674 Trifolium pratense HOM05D003355 ORTHO05D006192 7.2e-91 338.2 317 60.3
CiPaw.05G009200 Carya illinoinensis HOM05D003355 ORTHO05D006192 1.2e-90 337.4 317 60.6
Manes.06G172500 Manihot esculenta HOM05D003355 ORTHO05D006192 1.2e-90 337.4 314 60.5
TPR.G11717 Trifolium pratense HOM05D003355 ORTHO05D006192 1.2e-90 337.4 317 59.6
Dinv14066 Davidia involucrata HOM05D003355 ORTHO05D006192 2.1e-90 336.7 352 55.4
Gohir.D02G102800 Gossypium hirsutum HOM05D003355 ORTHO05D006192 6.1e-90 335.1 316 59.8
Glyma.02G273000 Glycine max HOM05D003355 ORTHO05D006192 8.0e-90 334.7 317 60.6
Glyma.14G045600 Glycine max HOM05D003355 ORTHO05D006192 8.0e-90 334.7 317 60.6
QL02p047945 Quercus lobata HOM05D003355 ORTHO05D006192 8.0e-90 334.7 313 59.4
Ca_06140_v3 Cicer arietinum L. HOM05D003355 ORTHO05D006192 1.4e-89 334.0 313 59.7
MSTRG.18871 Avicennia marina HOM05D003355 ORTHO05D006192 2.3e-89 333.2 315 60.3
Migut.M01551 Erythranthe guttata HOM05D003355 ORTHO05D006192 3.0e-89 332.8 316 60.1
GSVIVG01037891001 Vitis vinifera HOM05D003355 ORTHO05D006192 3.0e-89 332.8 317 59.6
Solyc02g069950.3 Solanum lycopersicum HOM05D003355 ORTHO05D006192 5.2e-89 332.0 316 58.9
Actinidia28067 Actinidia chinensis HOM05D003355 ORTHO05D006192 6.8e-89 331.6 272 65.4
RcHm_v2.0_Chr4g0435531 Rosa chinensis HOM05D003355 ORTHO05D006192 6.8e-89 331.6 317 59.9
Cc05_g16150 Coffea canephora HOM05D003355 ORTHO05D006192 8.8e-89 331.3 303 61.1
TAR629G1053 Trochodendron aralioides HOM05D003355 ORTHO05D006192 8.8e-89 331.3 302 60.9
PGSC0003DMG400021187 Solanum tuberosum HOM05D003355 ORTHO05D006192 2.0e-88 330.1 316 58.5
Sopen02g019090 Solanum pennellii HOM05D003355 ORTHO05D006192 4.4e-88 328.9 316 58.5
Phvul.008G209100 Phaseolus vulgaris HOM05D003355 ORTHO05D006192 7.5e-88 328.2 316 59.2
HPP92_009124 Vanilla planifolia HOM05D003355 ORTHO05D006192 9.7e-88 327.8 312 58.0
Gohir.A02G087800 Gossypium hirsutum HOM05D003355 ORTHO05D006192 1.3e-87 327.4 319 58.9
Nitab4.5_0001583g0050 Nicotiana tabacum HOM05D003355 ORTHO05D006192 2.8e-87 326.2 316 58.5
SalBow3G3003 Salvia bowleyana HOM05D003355 ORTHO05D006192 2.8e-87 326.2 313 59.1
DCAR_016825 Daucus carota HOM05D003355 ORTHO05D006192 3.7e-87 325.9 319 56.7
Nitab4.5_0001225g0080 Nicotiana tabacum HOM05D003355 ORTHO05D006192 8.3e-87 324.7 316 57.9
Rhsim06G0239500 Rhododendron simsii HOM05D003355 ORTHO05D006192 8.3e-87 324.7 353 54.1
Potri.007G065500 Populus trichocarpa HOM05D003355 ORTHO05D006192 2.4e-86 323.2 346 55.8
AUR62036327 Chenopodium quinoa HOM05D003355 ORTHO05D006192 3.5e-85 319.3 304 59.2
EL10Ac1g02148 Beta vulgaris HOM05D003355 ORTHO05D006192 5.9e-85 318.5 309 57.6
THA.LOC104818391 Tarenaya hassleriana HOM05D003355 ORTHO05D006192 5.9e-85 318.5 318 59.7
FAN22G1021 Fragaria x ananassa HOM05D003355 ORTHO05D006192 5.0e-84 315.5 307 58.0
FAN12G1758 Fragaria x ananassa HOM05D003355 ORTHO05D006192 6.5e-84 315.1 317 57.1
FAN12G1390 Fragaria x ananassa HOM05D003355 ORTHO05D006192 1.9e-83 313.5 318 56.9
AUR62034926 Chenopodium quinoa HOM05D003355 ORTHO05D006192 2.5e-83 313.2 309 58.9
FvH4_4g27690 Fragaria vesca HOM05D003355 ORTHO05D006192 3.2e-83 312.8 317 56.8
AL6G18890 Arabidopsis lyrata HOM05D003355 ORTHO05D006192 9.4e-83 311.2 319 56.7
CAN.G179.43 Capsicum annuum HOM05D003355 ORTHO05D006192 9.4e-83 311.2 312 56.7
THA.LOC104826152 Tarenaya hassleriana HOM05D003355 ORTHO05D006192 1.6e-82 310.5 321 57.0
Gorai.005G116700 Gossypium raimondii HOM05D003355 ORTHO05D006192 2.1e-82 310.1 316 56.6
PSO541G1087 Papaver somniferum HOM05D003355 ORTHO05D006192 2.1e-82 310.1 315 55.6
COL.COLO4_07227 Corchorus olitorius HOM05D003355 ORTHO05D006192 2.7e-82 309.7 320 57.8
Lalb_Chr10g0105821 Lupinus albus HOM05D003355 ORTHO05D006192 3.6e-82 309.3 317 56.5
Sc06g0001940 Simmondsia chinensis HOM05D003355 ORTHO05D006192 3.6e-82 309.3 311 57.2
Ciclev10020638m.g Citrus clementina HOM05D003355 ORTHO05D006192 4.7e-82 308.9 314 56.4
PSO133G0101 Papaver somniferum HOM05D003355 ORTHO05D006192 8.0e-82 308.1 315 54.6
Psat2g023040 Pisum sativum HOM05D003355 ORTHO05D006192 3.0e-81 306.2 317 55.8
Os10g0452800 Oryza sativa ssp. japonica HOM05D003355 ORTHO05D006192 4.0e-81 305.8 319 56.4
Prupe.1G308200 Prunus persica HOM05D003355 ORTHO05D006192 4.0e-81 305.8 315 55.6
AUR62032079 Chenopodium quinoa HOM05D003355 ORTHO05D006192 4.4e-80 302.4 272 62.1
Lsat_1_v5_gn_7_68200 Lactuca sativa HOM05D003355 ORTHO05D006192 7.5e-80 301.6 319 55.5
HanXRQChr16g0498231 Helianthus annuus HOM05D003355 ORTHO05D006192 1.3e-79 300.8 311 54.0
Aa31LG3G18130 Aethionema arabicum HOM05D003355 ORTHO05D006192 1.7e-79 300.4 325 54.5
C09p68600 Brassica napus HOM05D003355 ORTHO05D006192 3.7e-79 299.3 317 54.6
BcaB08g37262 Brassica carinata HOM05D003355 ORTHO05D006192 8.3e-79 298.1 314 54.8
Sp6g34500 Schrenkiella parvula HOM05D003355 ORTHO05D006192 8.3e-79 298.1 317 56.2
AUR62026608 Chenopodium quinoa HOM05D003355 ORTHO05D006192 1.1e-78 297.7 316 55.7
Peaxi162Scf00616g00632 Petunia axillaris HOM05D003355 ORTHO05D006192 1.1e-78 297.7 339 53.4
Peaxi162Scf01064g00246 Petunia axillaris HOM05D003355 ORTHO05D006192 1.4e-78 297.4 316 54.4
Peaxi162Scf53097g00004 Petunia axillaris HOM05D003355 ORTHO05D006192 1.4e-78 297.4 316 54.4
PGR142G1845 Punica granatum HOM05D003355 ORTHO05D006192 1.4e-78 297.4 316 53.5
SalBow8G2178 Salvia bowleyana HOM05D003355 ORTHO05D006192 1.2e-77 294.3 312 54.5
CDE07G1612 Ceratophyllum demersum HOM05D003355 ORTHO05D006192 1.6e-77 293.9 261 60.2
Carub.0006s0734 Capsella rubella HOM05D003355 ORTHO05D006192 3.5e-77 292.7 315 54.3
AT5G08420 Arabidopsis thaliana HOM05D003355 ORTHO05D006192 1.3e-76 290.8 318 55.3
Mapoly0002s0245 Marchantia polymorpha HOM05D003355 ORTHO05D006192 1.7e-76 290.4 310 52.6
A10p28340 Brassica napus HOM05D003355 ORTHO05D006192 6.6e-76 288.5 317 53.0
Pp3c24_18710 Physcomitrium patens HOM05D003355 ORTHO05D006192 6.6e-76 288.5 308 53.2
C02p03610 Brassica napus HOM05D003355 ORTHO05D006192 2.5e-75 286.6 336 50.3
AagrBONN_evm.TU.Sc2ySwM_117.1345 Anthoceros agrestis HOM05D003355 ORTHO05D006192 2.8e-74 283.1 317 50.5
FAN07G1422 Fragaria x ananassa HOM05D003355 ORTHO05D006192 2.8e-74 283.1 317 53.9
BcaC03g13229 Brassica carinata HOM05D003355 ORTHO05D006192 8.9e-73 278.1 258 58.1
CARHR204600 Cardamine hirsuta HOM05D003355 ORTHO05D006192 8.9e-73 278.1 320 51.9
Aqoxy4G00025 Aquilegia oxysepala HOM05D003355 ORTHO05D006192 4.4e-72 275.8 310 52.6
BolC9t59602H Brassica oleracea HOM05D003355 ORTHO05D006192 1.7e-71 273.9 318 51.9
Haze_10137 Corylus avellana HOM05D003355 ORTHO05D006192 2.2e-71 273.5 345 49.3
CBR_g23447 Chara braunii HOM05D003355 ORTHO05D006192 3.7e-71 272.7 260 57.7
SMO169G0154 Selaginella moellendorffii HOM05D003355 ORTHO05D006192 4.9e-71 272.3 253 58.9
Zm00001eb155040 Zea mays HOM05D003355 ORTHO05D006192 8.3e-71 271.6 321 51.1
Lj8A188G54 Lonicera japonica HOM05D003355 ORTHO05D006192 4.1e-70 269.2 238 60.9
Thhalv10013751m.g Eutrema salsugineum HOM05D003355 ORTHO05D006192 7.0e-70 268.5 317 51.4
QL02p103579 Quercus lobata HOM05D000004 ORTHO05D000002 3.5e-69 266.2 223 64.6
Cre12.g508200 Chlamydomonas reinhardtii HOM05D003355 ORTHO05D006192 5.0e-68 262.3 265 53.6
BraA10t44881Z Brassica rapa HOM05D003355 ORTHO05D006192 1.5e-67 260.8 319 50.5
Cfa021382 Carpinus fangiana HOM05D003355 ORTHO05D006192 2.3e-65 253.4 316 49.7
BolC2t06320H Brassica oleracea HOM05D003355 ORTHO05D006192 5.8e-64 248.8 263 53.2
Os01g0713800 Oryza sativa ssp. japonica HOM05D003355 ORTHO05D006192 3.7e-63 246.1 339 48.7
BraA02t04958Z Brassica rapa HOM05D003355 ORTHO05D006192 1.4e-62 244.2 346 44.5
MBI07_g21077_MAGBIO Magnolia biondii HOM05D003355 ORTHO05D006192 9.2e-62 241.5 323 47.4
ATR0559G338 Amborella trichopoda HOM05D003355 ORTHO05D006192 1.2e-61 241.1 207 60.4
TAR371G0068 Trochodendron aralioides HOM05D003355 ORTHO05D006192 2.7e-61 240.0 265 53.6
MCO15G216 Micromonas commoda HOM05D003355 ORTHO05D006192 1.1e-59 234.6 286 45.5
SEGI_21388 Sequoiadendron giganteum HOM05D003355 ORTHO05D006192 1.2e-58 231.1 243 55.1
Sabra07G0052100 Salix brachista HOM05D003355 ORTHO05D006192 7.5e-56 221.9 341 43.4
Cfa024749 Carpinus fangiana HOM05D003355 ORTHO05D006192 4.1e-54 216.1 270 47.4
PRCOL_00006993 Prasinoderma coloniale HOM05D003355 ORTHO05D006192 4.6e-53 212.6 315 41.9
unitig_46.g18517 Utricularia gibba HOM05D003355 ORTHO05D006192 8.3e-47 191.8 308 43.2
CDE07G0559 Ceratophyllum demersum HOM05D003355 ORTHO05D006192 9.2e-46 188.3 144 66.0
AagrBONN_evm.TU.Sc2ySwM_228.4702 Anthoceros agrestis HOM05D003355 ORTHO05D006192 4.6e-45 186.0 205 50.2
CARHR204610 Cardamine hirsuta HOM05D003355 ORTHO05D006192 4.6e-37 159.5 199 48.2
CAN.G322.12 Capsicum annuum HOM05D003355 ORTHO05D006192 2.3e-36 157.1 172 51.2
CARHR204150 Cardamine hirsuta HOM05D003355 ORTHO05D006192 2.4e-30 137.1 182 44.5
C02p02380 Brassica napus HOM05D003355 ORTHO05D006192 4.2e-30 136.3 136 56.6
BraA02t04852Z Brassica rapa HOM05D003355 ORTHO05D006192 1.2e-29 134.8 136 54.4
GSVIVG01012285001 Vitis vinifera HOM05D003355 ORTHO05D006192 3.5e-29 133.3 114 60.5
BolC3t13633H Brassica oleracea HOM05D003355 ORTHO05D006192 1.3e-26 124.8 194 41.2
BolC2t06203H Brassica oleracea HOM05D003355 ORTHO05D006192 2.1e-26 124.0 136 52.9
RcHm_v2.0_Chr5g0049291 Rosa chinensis HOM05D003355 ORTHO05D015652 1.8e-25 120.9 159 46.5
BcaB05g21712 Brassica carinata HOM05D003355 ORTHO05D006192 7.1e-22 109.0 136 48.5
QL01p011915 Quercus lobata HOM05D003355 ORTHO05D006192 1.3e-18 98.2 66 75.8
QL02p103586 Quercus lobata HOM05D003355 ORTHO05D006192 2.1e-18 97.4 65 73.8
RcHm_v2.0_Chr5g0014031 Rosa chinensis HOM05D003355 ORTHO05D013882 6.2e-18 95.9 165 38.2
RcHm_v2.0_Chr5g0014041 Rosa chinensis HOM05D003355 ORTHO05D013882 8.1e-18 95.5 163 38.0
RcHm_v2.0_Chr5g0014021 Rosa chinensis HOM05D003355 ORTHO05D013882 2.4e-17 94.0 158 38.0
SEGI_15731 Sequoiadendron giganteum HOM05D003355 ORTHO05D006192 5.3e-17 92.8 60 76.7
SEGI_37851 Sequoiadendron giganteum HOM05D003355 ORTHO05D006192 5.3e-17 92.8 60 76.7
BraA03t10346Z Brassica rapa HOM05D003355 ORTHO05D006192 2.6e-16 90.5 139 39.6
FAN19G0319 Fragaria x ananassa HOM05D003355 ORTHO05D013882 4.5e-16 89.7 165 35.2
Glyma.09G058066 Glycine max HOM05D003355 ORTHO05D013882 1.3e-15 88.2 50 76.0
FvH4_1g11160 Fragaria vesca HOM05D003355 ORTHO05D013882 2.9e-15 87.0 165 34.5
Actinidia29266 Actinidia chinensis HOM05D003355 ORTHO05D006192 8.4e-15 85.5 153 41.8
QL02p032103 Quercus lobata HOM05D003355 ORTHO05D002623 3.0e-12 77.0 138 41.3
MD02G1015700 Malus domestica HOM05D003355 ORTHO05D247400 1.1e-11 75.1 135 35.6
Prupe.2G125300 Prunus persica HOM05D003355 ORTHO05D013882 1.5e-11 74.7 146 35.6
MD04G1231500 Malus domestica HOM05D003355 ORTHO05D013882 2.5e-11 73.9 146 34.9
RcHm_v2.0_Chr7g0179721 Rosa chinensis HOM05D003355 ORTHO05D025419 7.4e-11 72.4 146 37.7
MD02G1059000 Malus domestica HOM05D003355 ORTHO05D247816 1.1e-09 68.6 147 36.7
Prupe.6G351700 Prunus persica HOM05D003355 ORTHO05D013882 1.1e-09 68.6 144 35.4
RcHm_v2.0_Chr3g0469061 Rosa chinensis HOM05D003355 ORTHO05D022549 1.5e-08 64.7 163 35.6
RcHm_v2.0_Chr3g0469081 Rosa chinensis HOM05D003355 ORTHO05D022549 1.5e-08 64.7 163 35.6
CAN.G79.30 Capsicum annuum HOM05D003355 ORTHO05D115802 6.5e-07 59.3 182 31.3
RcHm_v2.0_Chr3g0481091 Rosa chinensis HOM05D011179 ORTHO05D017929 1.1e-06 58.5 194 29.4
FAN05G2571 Fragaria x ananassa HOM05D012211 ORTHO05D045515 4.2e-06 56.6 155 34.8
FAN28G2737 Fragaria x ananassa HOM05D003355 ORTHO05D013882 4.2e-06 56.6 62 37.1
FAN14G1550 Fragaria x ananassa HOM05D012211 ORTHO05D204992 5.5e-06 56.2 157 34.4
CDE02G4229 Ceratophyllum demersum HOM05D003355 ORTHO05D028453 9.3e-06 55.5 33 81.8


User provided reference genes

Program Settings