Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0008280 Sechium edule HOM05D005382 ORTHO05D006795 5.0e-114 414.5 211 100.0
ClCG09G003490 Citrullus lanatus HOM05D005382 ORTHO05D006795 2.3e-90 335.9 212 84.0
MELO3C023486.2 Cucumis melo HOM05D005382 ORTHO05D006795 6.4e-85 317.8 212 80.7
CsaV3_7G031710 Cucumis sativus L. HOM05D005382 ORTHO05D006795 7.1e-84 314.3 215 78.6
Manes.11G069200 Manihot esculenta HOM05D005382 ORTHO05D006795 6.6e-74 281.2 221 69.2
Potri.001G041900 Populus trichocarpa HOM05D005382 ORTHO05D006795 1.8e-71 273.1 205 71.7
Sabra01G0028700 Salix brachista HOM05D005382 ORTHO05D006795 2.4e-71 272.7 220 67.7
Potri.003G184925 Populus trichocarpa HOM05D005382 ORTHO05D006795 2.2e-69 266.2 201 70.6
Thecc.06G046600 Theobroma cacao HOM05D005382 ORTHO05D006795 2.2e-69 266.2 210 68.1
CiPaw.01G256500 Carya illinoinensis HOM05D005382 ORTHO05D006795 2.9e-69 265.8 199 68.8
Sabra03G0135500 Salix brachista HOM05D005382 ORTHO05D006795 2.4e-68 262.7 205 70.2
COL.COLO4_26772 Corchorus olitorius HOM05D005382 ORTHO05D006795 9.3e-68 260.8 199 71.4
Gorai.007G085500 Gossypium raimondii HOM05D005382 ORTHO05D006795 6.0e-67 258.1 195 70.8
CiPaw.02G163400 Carya illinoinensis HOM05D005382 ORTHO05D006795 1.3e-66 256.9 200 68.0
MD17G1226400 Malus domestica HOM05D005382 ORTHO05D006795 1.3e-66 256.9 213 67.1
Gohir.A11G075200 Gossypium hirsutum HOM05D005382 ORTHO05D006795 1.7e-66 256.5 195 70.3
Manes.04G100900 Manihot esculenta HOM05D005382 ORTHO05D006795 5.1e-66 255.0 197 69.5
Cfa001857 Carpinus fangiana HOM05D005382 ORTHO05D006795 2.5e-65 252.7 180 75.6
Nn8g40079 Nelumbo nucifera HOM05D005382 ORTHO05D006795 4.3e-65 251.9 206 66.5
RcHm_v2.0_Chr2g0132311 Rosa chinensis HOM05D005382 ORTHO05D006795 5.6e-65 251.5 203 69.0
MD09G1227600 Malus domestica HOM05D005382 ORTHO05D006795 9.6e-65 250.8 203 68.0
PGR102G0492 Punica granatum HOM05D005382 ORTHO05D006795 8.1e-64 247.7 197 67.0
TWI12G1456 Tripterygium wilfordii HOM05D005382 ORTHO05D006795 8.1e-64 247.7 203 66.0
FAN05G5289 Fragaria x ananassa HOM05D005382 ORTHO05D006795 1.1e-63 247.3 203 68.0
Glyma.08G220400 Glycine max HOM05D005382 ORTHO05D006795 1.4e-63 246.9 200 67.5
Cc04_g05300 Coffea canephora HOM05D005382 ORTHO05D006795 2.4e-63 246.1 202 64.4
FvH4_6g28270 Fragaria vesca HOM05D005382 ORTHO05D006795 2.4e-63 246.1 202 66.8
Actinidia08935 Actinidia chinensis HOM05D005382 ORTHO05D006795 5.3e-63 245.0 203 64.5
Nn8g40087 Nelumbo nucifera HOM05D005382 ORTHO05D006795 6.9e-63 244.6 206 64.1
Ciclev10026461m.g Citrus clementina HOM05D005382 ORTHO05D006795 1.5e-62 243.4 200 67.0
FAN09G0036 Fragaria x ananassa HOM05D005382 ORTHO05D006795 1.5e-62 243.4 201 65.7
Lj3g0027435 Lotus japonicus HOM05D005382 ORTHO05D006795 2.0e-62 243.0 213 63.8
CSS0039254 Camellia sinensis var. sinensis HOM05D005382 ORTHO05D006795 3.4e-62 242.3 218 62.8
Eucgr.F03985 Eucalyptus grandis HOM05D005382 ORTHO05D006795 4.5e-62 241.9 200 67.0
Gohir.D11G079900 Gossypium hirsutum HOM05D005382 ORTHO05D006795 5.8e-62 241.5 177 72.3
DCAR_021374 Daucus carota HOM05D005382 ORTHO05D006795 1.7e-61 240.0 210 63.3
Lalb_Chr25g0278731 Lupinus albus HOM05D005382 ORTHO05D006795 2.2e-61 239.6 199 64.3
QL05p036845 Quercus lobata HOM05D005382 ORTHO05D006795 2.2e-61 239.6 179 71.5
Hma1.2p1_0329F.1_g127290 Hydrangea macrophylla HOM05D005382 ORTHO05D006795 3.8e-61 238.8 213 63.8
Medtr4g007700 Medicago truncatula HOM05D005382 ORTHO05D006795 3.8e-61 238.8 189 67.2
TAR625G1145 Trochodendron aralioides HOM05D005382 ORTHO05D006795 6.4e-61 238.0 214 60.7
Glyma.07G021400 Glycine max HOM05D005382 ORTHO05D006795 1.9e-60 236.5 202 64.9
CAN.G1008.7 Capsicum annuum HOM05D005382 ORTHO05D006795 4.2e-60 235.3 203 61.6
Nitab4.5_0002700g0060 Nicotiana tabacum HOM05D005382 ORTHO05D006795 9.3e-60 234.2 206 61.7
MSTRG.11221 Avicennia marina HOM05D005382 ORTHO05D006795 1.6e-59 233.4 219 57.1
Dinv21426 Davidia involucrata HOM05D005382 ORTHO05D006795 2.1e-59 233.0 200 65.5
FAN14G0578 Fragaria x ananassa HOM05D005382 ORTHO05D006795 2.1e-59 233.0 178 69.7
MSTRG.22842 Avicennia marina HOM05D005382 ORTHO05D006795 2.7e-59 232.6 215 58.1
Nitab4.5_0004738g0090 Nicotiana tabacum HOM05D005382 ORTHO05D006795 3.5e-59 232.3 204 60.8
Rhsim08G0203100 Rhododendron simsii HOM05D005382 ORTHO05D006795 3.5e-59 232.3 225 60.0
Haze_16689 Corylus avellana HOM05D005382 ORTHO05D006795 4.6e-59 231.9 149 79.2
Phvul.008G253200 Phaseolus vulgaris HOM05D005382 ORTHO05D006795 4.6e-59 231.9 200 63.5
Aa31LG4G1250 Aethionema arabicum HOM05D005382 ORTHO05D006795 7.9e-59 231.1 198 64.6
Lsat_1_v5_gn_1_30801 Lactuca sativa HOM05D005382 ORTHO05D006795 7.9e-59 231.1 219 59.4
Prupe.3G103600 Prunus persica HOM05D005382 ORTHO05D006795 7.9e-59 231.1 141 83.7
HanXRQChr04g0100021 Helianthus annuus HOM05D005382 ORTHO05D006795 1.3e-58 230.3 213 58.2
EL10Ac8g19398 Beta vulgaris HOM05D005382 ORTHO05D006795 2.3e-58 229.6 205 63.4
CDE04G1090 Ceratophyllum demersum HOM05D005382 ORTHO05D006795 2.3e-58 229.6 195 64.6
VMungo0647G2390 Vigna mungo HOM05D005382 ORTHO05D006795 3.0e-58 229.2 202 62.4
ECA232G4196 Erigeron canadensis HOM05D005382 ORTHO05D006795 3.9e-58 228.8 203 60.6
Eucgr.J03130 Eucalyptus grandis HOM05D005382 ORTHO05D006795 6.7e-58 228.0 204 61.8
FAN02G4537 Fragaria x ananassa HOM05D005382 ORTHO05D006795 6.7e-58 228.0 182 68.7
Migut.I00626 Erythranthe guttata HOM05D005382 ORTHO05D006795 8.7e-58 227.6 225 56.4
THA.LOC104808172 Tarenaya hassleriana HOM05D005382 ORTHO05D006795 8.7e-58 227.6 196 63.3
AUR62032996 Chenopodium quinoa HOM05D005382 ORTHO05D006795 1.9e-57 226.5 211 59.7
Peaxi162Scf00314g01032 Petunia axillaris HOM05D005382 ORTHO05D006795 1.9e-57 226.5 214 57.9
HanXRQChr09g0274181 Helianthus annuus HOM05D005382 ORTHO05D006795 2.5e-57 226.1 201 59.7
C06p29630 Brassica napus HOM05D005382 ORTHO05D006795 4.3e-57 225.3 188 63.8
BolC6t38128H Brassica oleracea HOM05D005382 ORTHO05D006795 4.3e-57 225.3 188 63.8
Rhsim12G0185400 Rhododendron simsii HOM05D005382 ORTHO05D006795 4.3e-57 225.3 239 55.6
A07p26960 Brassica napus HOM05D005382 ORTHO05D006795 5.6e-57 224.9 188 63.8
BraA07t30340Z Brassica rapa HOM05D005382 ORTHO05D006795 5.6e-57 224.9 188 63.8
MSTRG.9395 Avicennia marina HOM05D005382 ORTHO05D006795 1.3e-56 223.8 195 61.5
Carub.0002s2660 Capsella rubella HOM05D005382 ORTHO05D006795 1.3e-56 223.8 199 62.3
Sp5g34800 Schrenkiella parvula HOM05D005382 ORTHO05D006795 1.3e-56 223.8 199 62.3
BcaNung04166 Brassica carinata HOM05D005382 ORTHO05D006795 1.6e-56 223.4 188 62.8
Duzib235G0288 Durio zibethinus HOM05D005382 ORTHO05D006795 1.6e-56 223.4 159 76.1
ECA247G2189 Erigeron canadensis HOM05D005382 ORTHO05D006795 1.6e-56 223.4 200 60.0
AT1G80940 Arabidopsis thaliana HOM05D005382 ORTHO05D006795 2.1e-56 223.0 199 61.3
Duzib192G0805 Durio zibethinus HOM05D005382 ORTHO05D006795 2.1e-56 223.0 159 74.8
MBI15_g08404_MAGBIO Magnolia biondii HOM05D005382 ORTHO05D006795 2.1e-56 223.0 209 60.3
BcaB02g07237 Brassica carinata HOM05D005382 ORTHO05D006795 2.8e-56 222.6 191 63.4
Sopen03g036580 Solanum pennellii HOM05D005382 ORTHO05D006795 3.7e-56 222.2 210 57.1
GSVIVG01016103001 Vitis vinifera HOM05D005382 ORTHO05D006795 3.7e-56 222.2 198 63.1
Psat7g262200 Pisum sativum HOM05D005382 ORTHO05D006795 1.1e-55 220.7 174 68.4
Sc12g0008250 Simmondsia chinensis HOM05D005382 ORTHO05D006795 1.8e-55 219.9 200 62.5
TPR.G3367 Trifolium pratense HOM05D005382 ORTHO05D006795 1.8e-55 219.9 176 66.5
Thhalv10019121m.g Eutrema salsugineum HOM05D005382 ORTHO05D006795 2.4e-55 219.5 197 61.4
AL2G40440 Arabidopsis lyrata HOM05D005382 ORTHO05D006795 3.1e-55 219.2 197 61.4
Lj5A81T85 Lonicera japonica HOM05D005382 ORTHO05D006795 3.1e-55 219.2 190 65.3
CARHR073510 Cardamine hirsuta HOM05D005382 ORTHO05D006795 4.0e-55 218.8 151 72.8
SalBow1G1272 Salvia bowleyana HOM05D005382 ORTHO05D006795 4.0e-55 218.8 161 70.8
vmacro16842 Vaccinium macrocarpon HOM05D005382 ORTHO05D006795 4.0e-55 218.8 199 62.3
SGA_v2.0_scaffold515G52664 Striga asiatica HOM05D003096 ORTHO05D003521 5.3e-55 218.4 204 57.8
Lalb_Chr01g0011991 Lupinus albus HOM05D005382 ORTHO05D006795 6.9e-55 218.0 192 63.5
C06p53570 Brassica napus HOM05D005382 ORTHO05D006795 1.5e-54 216.9 195 60.5
Solyc03g117670.4 Solanum lycopersicum HOM05D005382 ORTHO05D006795 1.5e-54 216.9 203 57.1
PSO063G0682 Papaver somniferum HOM05D005382 ORTHO05D006795 2.0e-54 216.5 198 61.1
PSO782G0145 Papaver somniferum HOM05D005382 ORTHO05D006795 2.0e-54 216.5 198 61.1
BcaB02g08711 Brassica carinata HOM05D005382 ORTHO05D006795 5.8e-54 214.9 202 59.9
A07p44750 Brassica napus HOM05D005382 ORTHO05D006795 5.8e-54 214.9 201 60.2
TWI75G0559 Tripterygium wilfordii HOM05D005382 ORTHO05D006795 5.8e-54 214.9 177 66.7
BraA07t31983Z Brassica rapa HOM05D005382 ORTHO05D006795 1.0e-53 214.2 201 60.2
Oeu003125.1 Olea europaea HOM05D005382 ORTHO05D006795 2.2e-53 213.0 180 64.4
Lsat_1_v5_gn_4_85061 Lactuca sativa HOM05D005382 ORTHO05D006795 2.9e-53 212.6 197 57.9
BcaC08g47533 Brassica carinata HOM05D005382 ORTHO05D006795 4.9e-53 211.8 198 58.6
BolC6t40373H Brassica oleracea HOM05D005382 ORTHO05D006795 4.9e-53 211.8 198 58.6
AUR62034069 Chenopodium quinoa HOM05D007611 ORTHO05D006795 8.4e-53 211.1 158 71.5
Os02g0793900 Oryza sativa ssp. japonica HOM05D005382 ORTHO05D006795 1.2e-51 207.2 205 58.5
PGSC0003DMG400014155 Solanum tuberosum HOM05D005382 ORTHO05D006795 1.6e-51 206.8 138 74.6
HPP92_010348 Vanilla planifolia HOM05D005382 ORTHO05D006795 7.9e-51 204.5 207 55.6
CDE07G1687 Ceratophyllum demersum HOM05D005382 ORTHO05D006795 1.3e-50 203.8 128 80.5
Oeu051555.1 Olea europaea HOM05D005382 ORTHO05D006795 1.3e-50 203.8 159 68.6
SGA_v2.0_scaffold74G24593 Striga asiatica HOM05D005382 ORTHO05D006795 1.3e-50 203.8 203 55.2
Zm00001eb257680 Zea mays HOM05D005382 ORTHO05D006795 1.3e-50 203.8 203 57.6
ATR0580G392 Amborella trichopoda HOM05D005382 ORTHO05D006795 1.4e-47 193.7 189 58.2
arahy.Tifrunner.gnm1.ann1.HUQR60 Arachis hypogaea HOM05D005382 ORTHO05D006795 2.2e-45 186.4 201 54.2
arahy.Tifrunner.gnm1.ann1.7IZ6IW Arachis hypogaea HOM05D005382 ORTHO05D006795 6.5e-45 184.9 206 54.9
CANSAT56G2690 Cannabis sativa HOM05D005382 ORTHO05D006795 8.4e-45 184.5 219 50.2
Cpa.g.c28380.1 Carica papaya HOM05D005382 ORTHO05D006795 1.6e-43 180.3 128 70.3
SEGI_41275 Sequoiadendron giganteum HOM05D005382 ORTHO05D006795 4.6e-43 178.7 136 66.9
Mapoly0128s0009 Marchantia polymorpha HOM05D005382 ORTHO05D006795 9.7e-41 171.0 154 59.7
Pp3c25_9780 Physcomitrium patens HOM05D005382 ORTHO05D006795 9.7e-41 171.0 133 66.2
SMO145G0139 Selaginella moellendorffii HOM05D005382 ORTHO05D006795 2.2e-40 169.9 131 62.6
Pp3c16_25700 Physcomitrium patens HOM05D005382 ORTHO05D006795 8.2e-40 167.9 133 64.7
Ah.14g085670 Amaranthus hybridus HOM05D005382 ORTHO05D006795 2.2e-37 159.8 188 52.7
SEGI_02613 Sequoiadendron giganteum HOM05D005382 ORTHO05D006795 2.0e-33 146.7 112 63.4
Atru.chr1.2804_Atru.chr1.2805 Acer truncatum HOM05D005382 ORTHO05D006795 4.8e-32 142.1 213 46.5
Hund12559 Selenicereus undatus HOM05D005382 ORTHO05D006795 1.3e-29 134.0 133 57.1
CSS0015514 Camellia sinensis var. sinensis HOM05D005382 ORTHO05D006795 8.5e-29 131.3 131 60.3
Actinidia36864 Actinidia chinensis HOM05D005382 ORTHO05D006795 3.2e-28 129.4 201 41.8
BcaB07g33703 Brassica carinata HOM05D005382 ORTHO05D006795 6.1e-27 125.2 134 51.5
unitig_22.g6275 Utricularia gibba HOM05D005382 ORTHO05D006795 3.5e-22 109.4 77 74.0
BcaB07g33704 Brassica carinata HOM05D005382 ORTHO05D006795 8.5e-21 104.8 67 74.6
BcaB07g33705 Brassica carinata HOM05D005382 ORTHO05D006795 8.5e-21 104.8 67 74.6
AagrBONN_evm.TU.Sc2ySwM_117.2014 Anthoceros agrestis HOM05D005382 ORTHO05D006795 1.3e-16 90.9 72 63.9
Actinidia26580 Actinidia chinensis HOM05D005382 ORTHO05D006795 6.3e-16 88.6 70 64.3
TPR.G1583 Trifolium pratense HOM05D005382 ORTHO05D006795 2.0e-09 67.0 45 71.1
Actinidia26581 Actinidia chinensis HOM05D005382 ORTHO05D054410 7.5e-09 65.1 130 36.9


User provided reference genes

Program Settings