Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0008236 Sechium edule HOM05D003940 ORTHO05D004461 4.8e-48 194.1 96 100.0
ClCG06G006840 Citrullus lanatus HOM05D003940 ORTHO05D004461 1.5e-17 92.8 85 62.4
Sed0016632 Sechium edule HOM05D003940 ORTHO05D004461 2.0e-17 92.4 80 60.0
CsaV3_2G012950 Cucumis sativus L. HOM05D003940 ORTHO05D004461 2.9e-16 88.6 108 54.6
MELO3C022975.2 Cucumis melo HOM05D003940 ORTHO05D004461 2.3e-13 79.0 101 49.5
AUR62002262 Chenopodium quinoa HOM05D003940 ORTHO05D004461 6.2e-11 70.9 103 47.6
CANSAT78G1835 Cannabis sativa HOM05D003940 ORTHO05D004461 8.1e-11 70.5 111 44.1
CSS0034657 Camellia sinensis var. sinensis HOM05D003940 ORTHO05D004461 1.4e-10 69.7 70 51.4
Ciclev10006290m.g Citrus clementina HOM05D003940 ORTHO05D004461 4.0e-10 68.2 103 45.6
Sc25g0004050 Simmondsia chinensis HOM05D003940 ORTHO05D004461 1.2e-09 66.6 80 50.0
Sp1g03140 Schrenkiella parvula HOM05D003940 ORTHO05D004461 2.0e-09 65.9 70 52.9
Migut.G00451 Erythranthe guttata HOM05D003940 ORTHO05D004461 2.6e-09 65.5 78 52.6
Migut.G00452 Erythranthe guttata HOM05D003940 ORTHO05D004461 3.4e-09 65.1 79 51.9
Hma1.2p1_0986F.1_g244370 Hydrangea macrophylla HOM05D003940 ORTHO05D004461 4.4e-09 64.7 92 45.7
Sc19g0003500 Simmondsia chinensis HOM05D003940 ORTHO05D004461 5.8e-09 64.3 76 50.0
C05p02510 Brassica napus HOM05D003940 ORTHO05D004461 9.9e-09 63.5 70 51.4
BolC5t29030H Brassica oleracea HOM05D003940 ORTHO05D004461 9.9e-09 63.5 70 51.4
PGSC0003DMG400016324 Solanum tuberosum HOM05D003940 ORTHO05D004461 9.9e-09 63.5 96 44.8
BcaC07g42173 Brassica carinata HOM05D003940 ORTHO05D004461 1.3e-08 63.2 70 51.4
BcaC07g42193 Brassica carinata HOM05D003940 ORTHO05D004461 1.3e-08 63.2 70 51.4
MBI18_g43342_MAGBIO Magnolia biondii HOM05D003940 ORTHO05D004461 1.3e-08 63.2 99 40.4
EL10Ac3g05913 Beta vulgaris HOM05D003940 ORTHO05D004461 1.7e-08 62.8 90 47.8
CiPaw.01G188000 Carya illinoinensis HOM05D003940 ORTHO05D004461 1.7e-08 62.8 106 41.5
Thhalv10009178m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 1.7e-08 62.8 70 50.0
Glyma.10G188200 Glycine max HOM05D003940 ORTHO05D004461 1.7e-08 62.8 81 46.9
Phvul.007G129450 Phaseolus vulgaris HOM05D003940 ORTHO05D004461 1.7e-08 62.8 81 48.1
Psat6g138240 Pisum sativum HOM05D003940 ORTHO05D004461 1.7e-08 62.8 109 41.3
CSS0017531 Camellia sinensis var. sinensis HOM05D003940 ORTHO05D004461 2.2e-08 62.4 91 42.9
Cc03_g05120 Coffea canephora HOM05D003940 ORTHO05D004461 2.2e-08 62.4 102 43.1
Sc13g0005150 Simmondsia chinensis HOM05D003940 ORTHO05D004461 2.2e-08 62.4 87 46.0
AT1G04330 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 2.9e-08 62.0 86 41.9
Lalb_Chr19g0128361 Lupinus albus HOM05D003940 ORTHO05D004461 2.9e-08 62.0 106 41.5
Solyc06g053700.1 Solanum lycopersicum HOM05D003940 ORTHO05D004461 2.9e-08 62.0 96 43.8
Sopen06g018810 Solanum pennellii HOM05D003940 ORTHO05D004461 2.9e-08 62.0 96 43.8
GSVIVG01027728001 Vitis vinifera HOM05D000515 ORTHO05D003188 2.9e-08 62.0 85 44.7
AL1G13930 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 3.8e-08 61.6 86 41.9
AUR62015478 Chenopodium quinoa HOM05D000816 ORTHO05D005265 3.8e-08 61.6 105 42.9
Lalb_Chr21g0312371 Lupinus albus HOM05D003940 ORTHO05D004461 3.8e-08 61.6 82 46.3
BcaC05g24452 Brassica carinata HOM05D003940 ORTHO05D004461 4.9e-08 61.2 86 44.2
Medtr1g073910 Medicago truncatula HOM05D003940 ORTHO05D004461 4.9e-08 61.2 86 45.3
Potri.008G164801 Populus trichocarpa HOM05D003940 ORTHO05D004461 4.9e-08 61.2 98 43.9
Rhsim04G0188200 Rhododendron simsii HOM05D003940 ORTHO05D004461 4.9e-08 61.2 79 46.8
TPR.G26431 Trifolium pratense HOM05D006440 ORTHO05D003987 4.9e-08 61.2 87 48.3
ClCG05G004480 Citrullus lanatus HOM05D003940 ORTHO05D004461 6.4e-08 60.8 82 43.9
CsaV3_3G012380 Cucumis sativus L. HOM05D000244 ORTHO05D000179 6.4e-08 60.8 88 43.2
Dinv44656 Davidia involucrata HOM05D003940 ORTHO05D004461 6.4e-08 60.8 89 46.1
Peaxi162Scf00024g01711 Petunia axillaris HOM05D003940 ORTHO05D004461 6.4e-08 60.8 81 46.9
Aqoxy5G00265 Aquilegia oxysepala HOM05D003940 ORTHO05D004461 8.4e-08 60.5 95 40.0
MSTRG.9915 Avicennia marina HOM05D003940 ORTHO05D004461 8.4e-08 60.5 88 48.9
A10p02740 Brassica napus HOM05D003940 ORTHO05D004461 8.4e-08 60.5 70 50.0
BraA10t42542Z Brassica rapa HOM05D003940 ORTHO05D004461 8.4e-08 60.5 70 50.0
PSO210G0601 Papaver somniferum HOM05D003940 ORTHO05D004461 8.4e-08 60.5 98 41.8
Psat6g132880 Pisum sativum HOM05D003940 ORTHO05D004461 8.4e-08 60.5 76 48.7
Potri.010G073900 Populus trichocarpa HOM05D003940 ORTHO05D004461 8.4e-08 60.5 100 44.0
Glyma.20G202600 Glycine max HOM05D003940 ORTHO05D004461 1.1e-07 60.1 81 46.9
Manes.15G038200 Manihot esculenta HOM05D003940 ORTHO05D004461 1.1e-07 60.1 94 48.9
Carub.0001s0351 Capsella rubella HOM05D003940 ORTHO05D004461 1.4e-07 59.7 87 42.5
Prupe.1G034700 Prunus persica HOM05D003940 ORTHO05D004461 1.4e-07 59.7 107 41.1
Sed0000021 Sechium edule HOM05D003940 ORTHO05D004461 1.4e-07 59.7 98 42.9
PGSC0003DMG400017255 Solanum tuberosum HOM05D003940 ORTHO05D004461 1.4e-07 59.7 81 46.9
Cpa.g.sc44.90 Carica papaya HOM05D003940 ORTHO05D004461 1.9e-07 59.3 86 45.3
Sabra10G0034600 Salix brachista HOM05D003940 ORTHO05D004461 1.9e-07 59.3 98 43.9
TWI73G0411 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 1.9e-07 59.3 98 40.8
CARHR003650 Cardamine hirsuta HOM05D003940 ORTHO05D004461 2.4e-07 58.9 86 41.9
Duzib151G0370 Durio zibethinus HOM05D003940 ORTHO05D004461 2.4e-07 58.9 92 44.6
Nitab4.5_0000342g0180 Nicotiana tabacum HOM05D003940 ORTHO05D004461 2.4e-07 58.9 81 46.9
PGR031G1035 Punica granatum HOM05D003940 ORTHO05D004461 2.4e-07 58.9 102 44.1
Solyc09g089650.1 Solanum lycopersicum HOM05D003940 ORTHO05D004461 2.4e-07 58.9 85 44.7
Sopen09g032590 Solanum pennellii HOM05D003940 ORTHO05D004461 2.4e-07 58.9 83 45.8
TPR.G15869 Trifolium pratense HOM05D003940 ORTHO05D004461 2.4e-07 58.9 86 44.2
AL3G37790 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 3.2e-07 58.5 84 44.0
Ca_09815_v3 Cicer arietinum L. HOM05D003940 ORTHO05D004461 3.2e-07 58.5 87 46.0
Glyma.10G008021 Glycine max HOM05D003940 ORTHO05D004461 3.2e-07 58.5 79 43.0
Peaxi162Scf00325g00012 Petunia axillaris HOM05D003940 ORTHO05D004461 3.2e-07 58.5 104 41.3
Peaxi162Scf00325g00015 Petunia axillaris HOM05D003940 ORTHO05D004461 3.2e-07 58.5 104 41.3
SalBow2G1766 Salvia bowleyana HOM05D003940 ORTHO05D004461 3.2e-07 58.5 95 46.3
COL.COLO4_15828 Corchorus olitorius HOM05D003940 ORTHO05D004461 4.2e-07 58.2 92 41.3
Gohir.D10G154400 Gossypium hirsutum HOM05D003940 ORTHO05D004461 4.2e-07 58.2 95 43.2
Gorai.011G172300 Gossypium raimondii HOM05D003940 ORTHO05D004461 4.2e-07 58.2 95 43.2
Lj6g0004880 Lotus japonicus HOM05D003940 ORTHO05D004461 4.2e-07 58.2 96 42.7
TWI09G0780 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 4.2e-07 58.2 97 39.2
Actinidia04462 Actinidia chinensis HOM05D003940 ORTHO05D004461 5.4e-07 57.8 75 46.7
HanXRQChr03g0092241 Helianthus annuus HOM05D003940 ORTHO05D004461 5.4e-07 57.8 96 42.7
Lj5g0009696 Lotus japonicus HOM05D003940 ORTHO05D004461 5.4e-07 57.8 87 40.2
TAR362G0514 Trochodendron aralioides HOM05D003940 ORTHO05D004461 5.4e-07 57.8 76 42.1
Hma1.2p1_0310F.1_g120730 Hydrangea macrophylla HOM05D003940 ORTHO05D004461 7.1e-07 57.4 100 40.0
Nitab4.5_0007234g0020 Nicotiana tabacum HOM05D003940 ORTHO05D004461 7.1e-07 57.4 81 46.9
Phvul.007G272100 Phaseolus vulgaris HOM05D003940 ORTHO05D004461 7.1e-07 57.4 82 41.5
Duzib212G0271 Durio zibethinus HOM05D003940 ORTHO05D004461 9.3e-07 57.0 92 42.4
TAR636G1753 Trochodendron aralioides HOM05D003940 ORTHO05D004461 9.3e-07 57.0 78 42.3
Gorai.006G070500 Gossypium raimondii HOM05D003940 ORTHO05D004461 1.2e-06 56.6 98 41.8
CAN.G738.11 Capsicum annuum HOM05D003940 ORTHO05D004461 1.6e-06 56.2 94 44.7
vmacro08448 Vaccinium macrocarpon HOM05D003940 ORTHO05D004461 1.6e-06 56.2 81 45.7
Ca_05393_v3 Cicer arietinum L. HOM05D003940 ORTHO05D004461 2.1e-06 55.8 102 38.2
FAN17G2041 Fragaria x ananassa HOM05D003940 ORTHO05D004461 2.1e-06 55.8 112 42.0
RcHm_v2.0_Chr4g0391391 Rosa chinensis HOM05D003940 ORTHO05D004461 2.1e-06 55.8 122 40.2
Thecc.04G250000 Theobroma cacao HOM05D003940 ORTHO05D004461 2.1e-06 55.8 92 41.3
FAN12G3937 Fragaria x ananassa HOM05D003940 ORTHO05D004461 2.7e-06 55.5 113 42.5
MD16G1213100 Malus domestica HOM05D003940 ORTHO05D004461 2.7e-06 55.5 111 39.6
Oeu025569.1 Olea europaea HOM05D003940 ORTHO05D004461 2.7e-06 55.5 77 49.4
QL06p016655 Quercus lobata HOM05D003940 ORTHO05D004461 2.7e-06 55.5 92 43.5
Gohir.D09G056900 Gossypium hirsutum HOM05D003940 ORTHO05D004461 3.5e-06 55.1 98 41.8
AT3G23170 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 4.6e-06 54.7 87 41.4
TAR602G0001 Trochodendron aralioides HOM05D003940 ORTHO05D004461 4.6e-06 54.7 88 42.0
Aa31LG8G9650 Aethionema arabicum HOM05D003940 ORTHO05D004461 6.0e-06 54.3 97 39.2
FvH4_4g03100 Fragaria vesca HOM05D003940 ORTHO05D004461 6.0e-06 54.3 115 40.9
Cfa008351 Carpinus fangiana HOM05D003940 ORTHO05D004461 7.8e-06 53.9 103 41.7
THA.LOC104808609 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 7.8e-06 53.9 85 40.0


User provided reference genes

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