Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0008158 Sechium edule HOM05D006171 ORTHO05D007294 6.3e-117 424.1 210 100.0
MELO3C023482.2 Cucumis melo HOM05D006171 ORTHO05D007294 3.9e-82 308.5 176 90.3
CsaV3_7G031750 Cucumis sativus L. HOM05D006171 ORTHO05D007294 1.2e-80 303.5 176 89.2
ClCG09G003450 Citrullus lanatus HOM05D006171 ORTHO05D007294 1.1e-79 300.4 176 88.1
Cfa001846 Carpinus fangiana HOM05D006171 ORTHO05D007294 1.7e-66 256.5 176 74.4
arahy.Tifrunner.gnm1.ann1.B85C5A Arachis hypogaea HOM05D006171 ORTHO05D007294 6.2e-64 248.1 174 73.0
arahy.Tifrunner.gnm1.ann1.F1WQ27 Arachis hypogaea HOM05D006171 ORTHO05D007294 6.2e-64 248.1 174 73.0
Manes.11G069800 Manihot esculenta HOM05D006171 ORTHO05D007294 6.2e-64 248.1 186 69.9
Lsat_1_v5_gn_4_84921 Lactuca sativa HOM05D006171 ORTHO05D007294 8.1e-64 247.7 144 79.2
HanXRQChr16g0499501 Helianthus annuus HOM05D006171 ORTHO05D007294 1.8e-63 246.5 166 71.7
MSTRG.9390 Avicennia marina HOM05D006171 ORTHO05D007294 2.4e-63 246.1 183 68.3
SalBow1G2136 Salvia bowleyana HOM05D006171 ORTHO05D007294 2.4e-63 246.1 171 73.1
Duzib235G0222 Durio zibethinus HOM05D006171 ORTHO05D007294 3.1e-63 245.7 155 78.7
FAN09G0753 Fragaria x ananassa HOM05D006171 ORTHO05D007294 3.1e-63 245.7 172 70.9
Cpa.g.sc95.67 Carica papaya HOM05D006171 ORTHO05D007294 5.2e-63 245.0 162 74.7
PGR102G1595 Punica granatum HOM05D006171 ORTHO05D007294 5.2e-63 245.0 161 76.4
CiPaw.01G256900 Carya illinoinensis HOM05D006171 ORTHO05D007294 6.8e-63 244.6 177 72.9
Nitab4.5_0002700g0080 Nicotiana tabacum HOM05D006171 ORTHO05D007294 6.8e-63 244.6 144 80.6
FvH4_6g28180 Fragaria vesca HOM05D006171 ORTHO05D007294 8.9e-63 244.2 174 71.8
FAN14G3270 Fragaria x ananassa HOM05D006171 ORTHO05D007294 8.9e-63 244.2 174 71.8
ECA232G3902 Erigeron canadensis HOM05D006171 ORTHO05D007294 1.2e-62 243.8 143 79.0
RcHm_v2.0_Chr2g0132161 Rosa chinensis HOM05D006171 ORTHO05D007294 1.2e-62 243.8 137 83.9
BraA09t41476Z Brassica rapa HOM05D000031 ORTHO05D007294 1.5e-62 243.4 171 69.6
A09p61030 Brassica napus HOM05D000031 ORTHO05D007294 2.0e-62 243.0 172 69.2
Lj3g0005429 Lotus japonicus HOM05D006171 ORTHO05D007294 2.0e-62 243.0 173 68.8
TWI12G1342 Tripterygium wilfordii HOM05D006171 ORTHO05D007294 2.0e-62 243.0 177 68.9
Dinv21434 Davidia involucrata HOM05D006171 ORTHO05D007294 3.4e-62 242.3 138 82.6
Nn2g12468 Nelumbo nucifera HOM05D006171 ORTHO05D007294 3.4e-62 242.3 147 79.6
BcaB03g14506 Brassica carinata HOM05D000031 ORTHO05D007294 4.4e-62 241.9 183 66.7
Glyma.07G020900 Glycine max HOM05D006171 ORTHO05D007294 4.4e-62 241.9 177 68.9
Potri.003G185901 Populus trichocarpa HOM05D006171 ORTHO05D007294 7.6e-62 241.1 142 78.9
Prupe.3G104600 Prunus persica HOM05D006171 ORTHO05D007294 7.6e-62 241.1 138 82.6
AT1G16080 Arabidopsis thaliana HOM05D006171 ORTHO05D007294 9.9e-62 240.7 174 69.0
Glyma.08G220900 Glycine max HOM05D006171 ORTHO05D007294 9.9e-62 240.7 172 69.8
Peaxi162Scf00314g01040 Petunia axillaris HOM05D006171 ORTHO05D007294 9.9e-62 240.7 144 78.5
Potri.003G185754 Populus trichocarpa HOM05D006171 ORTHO05D007294 9.9e-62 240.7 142 79.6
Thecc.06G048100 Theobroma cacao HOM05D006171 ORTHO05D007294 1.3e-61 240.4 148 78.4
THA.LOC104812426 Tarenaya hassleriana HOM05D006171 ORTHO05D007294 1.7e-61 240.0 182 66.5
Thhalv10008259m.g Eutrema salsugineum HOM05D006171 ORTHO05D007294 2.2e-61 239.6 143 79.0
Potri.003G185501 Populus trichocarpa HOM05D006171 ORTHO05D007294 2.2e-61 239.6 142 78.9
AL1G28240 Arabidopsis lyrata HOM05D006171 ORTHO05D007294 2.9e-61 239.2 174 68.4
VMungo0647G1588 Vigna mungo HOM05D006171 ORTHO05D007294 2.9e-61 239.2 172 70.9
BraA06t24379Z Brassica rapa HOM05D006171 ORTHO05D007294 3.8e-61 238.8 142 78.9
Potri.001G040100 Populus trichocarpa HOM05D006171 ORTHO05D007294 3.8e-61 238.8 160 71.9
VMungo1309G0227 Vigna mungo HOM05D006171 ORTHO05D007294 3.8e-61 238.8 142 76.8
C08p44630 Brassica napus HOM05D000031 ORTHO05D007294 6.4e-61 238.0 180 66.7
BolC8t52009H Brassica oleracea HOM05D000031 ORTHO05D007294 6.4e-61 238.0 180 66.7
Phvul.009G155700 Phaseolus vulgaris HOM05D006171 ORTHO05D007294 6.4e-61 238.0 142 76.8
Sp1g14390 Schrenkiella parvula HOM05D006171 ORTHO05D007294 6.4e-61 238.0 143 78.3
BolC5t30159H Brassica oleracea HOM05D006171 ORTHO05D007294 8.4e-61 237.7 173 68.2
Eucgr.F03988 Eucalyptus grandis HOM05D006171 ORTHO05D007294 8.4e-61 237.7 171 71.9
BcaB02g06590 Brassica carinata HOM05D006171 ORTHO05D007294 1.1e-60 237.3 173 68.2
BcaC05g25605 Brassica carinata HOM05D006171 ORTHO05D007294 1.4e-60 236.9 173 67.6
A06p12100 Brassica napus HOM05D006171 ORTHO05D007294 1.4e-60 236.9 175 69.7
Ciclev10025944m.g Citrus clementina HOM05D006171 ORTHO05D007294 1.4e-60 236.9 144 79.2
Solyc03g117740.3 Solanum lycopersicum HOM05D006171 ORTHO05D007294 1.4e-60 236.9 173 68.2
Carub.0001s1588 Capsella rubella HOM05D006171 ORTHO05D007294 1.9e-60 236.5 179 68.2
CSS0033272 Camellia sinensis var. sinensis HOM05D006171 ORTHO05D007294 2.4e-60 236.1 144 76.4
Sopen03g036650 Solanum pennellii HOM05D006171 ORTHO05D007294 3.2e-60 235.7 173 67.6
Ah.09g231760 Amaranthus hybridus HOM05D006171 ORTHO05D007294 5.4e-60 235.0 148 75.7
Lj5C82T4 Lonicera japonica HOM05D006171 ORTHO05D007294 5.4e-60 235.0 146 78.8
Lalb_Chr25g0278721 Lupinus albus HOM05D006171 ORTHO05D007294 5.4e-60 235.0 174 70.1
PGSC0003DMG400014158 Solanum tuberosum HOM05D006171 ORTHO05D007294 5.4e-60 235.0 158 72.2
CAN.G1008.12 Capsicum annuum HOM05D006171 ORTHO05D007294 7.1e-60 234.6 175 67.4
Migut.D01148 Erythranthe guttata HOM05D006171 ORTHO05D007294 7.1e-60 234.6 183 66.1
MD09G1228700 Malus domestica HOM05D006171 ORTHO05D007294 7.1e-60 234.6 138 82.6
Hund22405 Selenicereus undatus HOM05D006171 ORTHO05D007294 9.3e-60 234.2 141 81.6
Sc10g0006500 Simmondsia chinensis HOM05D006171 ORTHO05D007294 9.3e-60 234.2 147 76.2
TAR626G1848 Trochodendron aralioides HOM05D006171 ORTHO05D007294 9.3e-60 234.2 157 70.7
Atru.chr1.2816 Acer truncatum HOM05D006171 ORTHO05D007294 1.2e-59 233.8 145 80.0
QL05p037111 Quercus lobata HOM05D006171 ORTHO05D007294 1.6e-59 233.4 137 81.0
unitig_62.g23820 Utricularia gibba HOM05D006171 ORTHO05D007294 1.6e-59 233.4 172 66.3
Aqoxy7G02339 Aquilegia oxysepala HOM05D006171 ORTHO05D007294 2.1e-59 233.0 147 73.5
Psat7g260440 Pisum sativum HOM05D006171 ORTHO05D007294 2.1e-59 233.0 169 69.2
C05p14280 Brassica napus HOM05D006171 ORTHO05D007294 2.7e-59 232.6 173 67.6
Gohir.D05G117900 Gossypium hirsutum HOM05D006171 ORTHO05D007294 2.7e-59 232.6 130 83.1
Gorai.009G121800 Gossypium raimondii HOM05D006171 ORTHO05D007294 2.7e-59 232.6 130 83.1
Actinidia36860 Actinidia chinensis HOM05D006171 ORTHO05D007294 4.6e-59 231.9 142 78.2
Gohir.A05G117000 Gossypium hirsutum HOM05D006171 ORTHO05D007294 4.6e-59 231.9 130 82.3
Medtr4g007910 Medicago truncatula HOM05D006171 ORTHO05D007294 4.6e-59 231.9 143 76.2
COL.COLO4_26789 Corchorus olitorius HOM05D006171 ORTHO05D007294 6.0e-59 231.5 129 83.7
Aa31LG7G650 Aethionema arabicum HOM05D006171 ORTHO05D007294 7.8e-59 231.1 143 77.6
Nitab4.5_0004738g0050 Nicotiana tabacum HOM05D006171 ORTHO05D007294 1.0e-58 230.7 144 78.5
Phvul.008G253700 Phaseolus vulgaris HOM05D006171 ORTHO05D007294 1.3e-58 230.3 138 79.7
AUR62002650 Chenopodium quinoa HOM05D006171 ORTHO05D007294 3.0e-58 229.2 138 76.1
Sabra03G0135700 Salix brachista HOM05D006171 ORTHO05D007294 3.0e-58 229.2 149 74.5
CSS0034221 Camellia sinensis var. sinensis HOM05D006171 ORTHO05D007294 3.9e-58 228.8 144 75.7
Os08g0266300 Oryza sativa ssp. japonica HOM05D006171 ORTHO05D007294 6.6e-58 228.0 179 67.0
Rhsim12G0183500 Rhododendron simsii HOM05D006171 ORTHO05D007294 3.3e-57 225.7 130 80.8
Potri.001G041140 Populus trichocarpa HOM05D006171 ORTHO05D007294 9.6e-57 224.2 179 65.9
SGA_v2.0_scaffold74G24604 Striga asiatica HOM05D006171 ORTHO05D007294 1.3e-56 223.8 129 79.1
CDE07G0158 Ceratophyllum demersum HOM05D006171 ORTHO05D007294 2.1e-56 223.0 163 68.1
Zm00001eb177930 Zea mays HOM05D006171 ORTHO05D007294 2.1e-56 223.0 157 70.7
HPP92_021945 Vanilla planifolia HOM05D006171 ORTHO05D007294 4.8e-56 221.9 168 67.3
FAN05G3051 Fragaria x ananassa HOM05D006171 ORTHO05D007294 1.4e-55 220.3 187 64.2
vmacro16838 Vaccinium macrocarpon HOM05D006171 ORTHO05D007294 1.4e-55 220.3 126 81.0
Oeu003115.1 Olea europaea HOM05D006171 ORTHO05D007294 2.0e-54 216.5 118 83.1
Oeu003116.1 Olea europaea HOM05D006171 ORTHO05D007294 2.0e-54 216.5 118 83.1
GSVIVG01016093001 Vitis vinifera HOM05D006171 ORTHO05D007294 5.8e-54 214.9 118 83.1
Cc04_g05360 Coffea canephora HOM05D006171 ORTHO05D007294 7.6e-54 214.5 118 82.2
MBI14_g16440_MAGBIO Magnolia biondii HOM05D006171 ORTHO05D007294 1.3e-53 213.8 127 77.2
HanXRQChr16g0499491 Helianthus annuus HOM05D006171 ORTHO05D007294 1.9e-52 209.9 167 60.5
AUR62034059 Chenopodium quinoa HOM05D006171 ORTHO05D007294 5.4e-52 208.4 182 57.7
AagrBONN_evm.TU.Sc2ySwM_344.694 Anthoceros agrestis HOM05D006171 ORTHO05D007294 2.5e-49 199.5 155 64.5
Pp3c1_40240 Physcomitrium patens HOM05D006171 ORTHO05D007294 6.2e-48 194.9 144 66.0
Mapoly0047s0137 Marchantia polymorpha HOM05D006171 ORTHO05D007294 1.8e-47 193.4 159 59.7
CBR_g3722 Chara braunii HOM05D006171 ORTHO05D007294 6.4e-45 184.9 152 61.8
CBR_g39222 Chara braunii HOM05D006171 ORTHO05D007294 4.2e-44 182.2 143 63.6
SMO356G0223 Selaginella moellendorffii HOM05D006171 ORTHO05D007294 5.4e-44 181.8 135 65.2
Hma1.2p1_2173F.1_g316040 Hydrangea macrophylla HOM05D006171 ORTHO05D007294 4.6e-43 178.7 138 65.9
EL10Ac8g19420 Beta vulgaris HOM05D006171 ORTHO05D007294 2.1e-40 169.9 146 61.0
MCO15G666 Micromonas commoda HOM05D006171 ORTHO05D007294 3.4e-38 162.5 136 57.4
Cre10.g435850 Chlamydomonas reinhardtii HOM05D006171 ORTHO05D007294 2.2e-37 159.8 131 59.5
CDE04G3654 Ceratophyllum demersum HOM05D006171 ORTHO05D007294 4.9e-37 158.7 131 60.3
PRCOL_00006061 Prasinoderma coloniale HOM05D006171 ORTHO05D007294 3.2e-36 156.0 118 59.3
Rhsim12G0183600 Rhododendron simsii HOM05D006171 ORTHO05D007294 6.1e-27 125.2 85 69.4
PSO017G5952 Papaver somniferum HOM05D006171 ORTHO05D007294 3.3e-25 119.4 67 82.1
CANSAT64G1829 Cannabis sativa HOM05D006171 ORTHO05D007294 4.3e-25 119.0 67 82.1
PSO170G6342 Papaver somniferum HOM05D006171 ORTHO05D007294 3.7e-24 115.9 67 79.1
RcHm_v2.0_Chr2g0132221 Rosa chinensis HOM05D006171 ORTHO05D007294 6.9e-23 111.7 68 73.5
MD17G1227100 Malus domestica HOM05D006171 ORTHO05D007294 1.2e-22 110.9 65 78.5
SEGI_00638 Sequoiadendron giganteum HOM05D006171 ORTHO05D007294 1.5e-22 110.5 75 69.3
RcHm_v2.0_Chr2g0132191 Rosa chinensis HOM05D006171 ORTHO05D007294 5.9e-22 108.6 64 78.1
ATR0580G215 Amborella trichopoda HOM05D006171 ORTHO05D007294 7.7e-22 108.2 65 78.5
Aqoxy6G02563 Aquilegia oxysepala HOM05D006171 ORTHO05D007294 1.3e-21 107.5 136 44.1
AagrBONN_evm.TU.Sc2ySwM_344.1199 Anthoceros agrestis HOM05D006171 ORTHO05D007294 8.8e-18 94.7 132 40.9
Nn5g31109 Nelumbo nucifera HOM05D006171 ORTHO05D007294 1.2e-14 84.3 71 62.0
Cre03.g167050 Chlamydomonas reinhardtii HOM05D006171 ORTHO05D007294 1.0e-10 71.2 81 49.4
PRCOL_00003410 Prasinoderma coloniale HOM05D006171 ORTHO05D007294 2.4e-07 60.1 151 29.8
arahy.Tifrunner.gnm1.ann1.VYJR5C Arachis hypogaea HOM05D006171 ORTHO05D007294 5.9e-06 55.5 30 86.7


User provided reference genes

Program Settings