Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0008127 Sechium edule HOM05D004910 ORTHO05D006864 0.0e+00 4141.3 2159 100.0
MELO3C006215.2 Cucumis melo HOM05D004910 ORTHO05D006864 0.0e+00 3539.2 2162 85.2
CsaV3_3G009930 Cucumis sativus L. HOM05D004910 ORTHO05D006864 0.0e+00 3501.1 2162 84.6
ClCG05G002500 Citrullus lanatus HOM05D004910 ORTHO05D006864 0.0e+00 3344.3 2082 83.5
Cfa003693 Carpinus fangiana HOM05D004910 ORTHO05D006864 0.0e+00 2540.4 2171 63.4
MD07G1080500 Malus domestica HOM05D004910 ORTHO05D006864 0.0e+00 2425.2 2179 61.7
Thecc.05G234000 Theobroma cacao HOM05D004910 ORTHO05D006864 0.0e+00 2419.0 2176 61.9
CiPaw.02G046700 Carya illinoinensis HOM05D004910 ORTHO05D006864 0.0e+00 2417.1 2181 61.0
Potri.013G071800 Populus trichocarpa HOM05D004910 ORTHO05D006864 0.0e+00 2410.9 2182 60.4
Prupe.2G105000 Prunus persica HOM05D004910 ORTHO05D006864 0.0e+00 2405.9 2171 61.4
CANSAT25G1237 Cannabis sativa HOM05D004910 ORTHO05D006864 0.0e+00 2390.1 2179 60.5
RcHm_v2.0_Chr1g0342311 Rosa chinensis HOM05D004910 ORTHO05D006864 0.0e+00 2383.2 2174 60.8
Duzib177G0285 Durio zibethinus HOM05D004910 ORTHO05D006864 0.0e+00 2364.0 2180 60.9
TAR629G2465 Trochodendron aralioides HOM05D004910 ORTHO05D006864 0.0e+00 2348.5 2204 59.3
Manes.08G157000 Manihot esculenta HOM05D004910 ORTHO05D006864 0.0e+00 2347.0 2183 59.0
FAN10G3403 Fragaria x ananassa HOM05D004910 ORTHO05D006864 0.0e+00 2337.8 2171 59.7
FvH4_7g07740 Fragaria vesca HOM05D004910 ORTHO05D006864 0.0e+00 2336.6 2171 59.9
Glyma.03G099800 Glycine max HOM05D004910 ORTHO05D006864 0.0e+00 2332.8 2175 58.8
FAN03G0816 Fragaria x ananassa HOM05D004910 ORTHO05D006864 0.0e+00 2326.6 2193 59.2
TWI34G0933 Tripterygium wilfordii HOM05D004910 ORTHO05D006864 0.0e+00 2325.4 2207 58.5
FAN06G0636 Fragaria x ananassa HOM05D004910 ORTHO05D006864 0.0e+00 2320.8 2191 59.2
Phvul.010G039700 Phaseolus vulgaris HOM05D004910 ORTHO05D006864 0.0e+00 2306.9 2176 57.9
FAN01G0980 Fragaria x ananassa HOM05D004910 ORTHO05D006864 0.0e+00 2303.5 2268 57.7
Glyma.07G122900 Glycine max HOM05D004910 ORTHO05D006864 0.0e+00 2302.7 2177 58.5
Gorai.007G249800 Gossypium raimondii HOM05D004910 ORTHO05D006864 0.0e+00 2302.3 2187 59.5
Lalb_Chr07g0194851 Lupinus albus HOM05D004910 ORTHO05D006864 0.0e+00 2291.2 2171 58.4
TPR.G17367 Trifolium pratense HOM05D004910 ORTHO05D006864 0.0e+00 2290.4 2176 58.0
Dinv43524 Davidia involucrata HOM05D004910 ORTHO05D006864 0.0e+00 2283.8 2176 59.1
Ca_25886_v3 Cicer arietinum L. HOM05D004910 ORTHO05D006864 0.0e+00 2268.0 2172 58.1
Lj3g0022995 Lotus japonicus HOM05D004910 ORTHO05D006864 0.0e+00 2266.1 2172 57.6
GSVIVG01019298001 Vitis vinifera HOM05D004910 ORTHO05D006864 0.0e+00 2264.6 2207 58.0
Medtr8g009780 Medicago truncatula HOM05D004910 ORTHO05D006864 0.0e+00 2249.6 2176 57.4
Eucgr.D01069 Eucalyptus grandis HOM05D004910 ORTHO05D006864 0.0e+00 2207.9 2177 57.0
Ciclev10030475m.g Citrus clementina HOM05D004910 ORTHO05D006864 0.0e+00 2181.8 2180 56.6
Haze_15792 Corylus avellana HOM05D004910 ORTHO05D006864 0.0e+00 2147.1 1952 60.4
Nitab4.5_0006461g0010 Nicotiana tabacum HOM05D004910 ORTHO05D006864 0.0e+00 2117.0 2173 55.7
Nitab4.5_0000792g0070 Nicotiana tabacum HOM05D004910 ORTHO05D006864 0.0e+00 2116.3 2183 55.7
arahy.Tifrunner.gnm1.ann1.7UUD9R Arachis hypogaea HOM05D004910 ORTHO05D006864 0.0e+00 2114.3 2099 56.3
DCAR_029567 Daucus carota HOM05D004910 ORTHO05D006864 0.0e+00 2109.7 2203 54.4
Aqoxy3G02002 Aquilegia oxysepala HOM05D004910 ORTHO05D006864 0.0e+00 2108.6 2209 55.4
PSO782G5450 Papaver somniferum HOM05D004910 ORTHO05D006864 0.0e+00 2100.5 2199 55.0
Cc08_g05600 Coffea canephora HOM05D004910 ORTHO05D006864 0.0e+00 2090.5 2178 53.3
Rhsim07G0047300 Rhododendron simsii HOM05D004910 ORTHO05D006864 0.0e+00 2078.1 2023 56.5
MBI04_g30775_MAGBIO Magnolia biondii HOM05D004910 ORTHO05D006864 0.0e+00 2052.3 2245 53.4
CAN.G992.20 Capsicum annuum HOM05D004910 ORTHO05D006864 0.0e+00 2051.9 2181 54.1
SalBow4G1969 Salvia bowleyana HOM05D004910 ORTHO05D006864 0.0e+00 2039.2 2199 53.2
COL.COLO4_08664 Corchorus olitorius HOM05D004910 ORTHO05D006864 0.0e+00 2029.6 2169 54.4
Sopen01g032990 Solanum pennellii HOM05D004910 ORTHO05D006864 0.0e+00 2021.9 2176 54.2
VMungo0331G1962 Vigna mungo HOM05D004910 ORTHO05D006864 0.0e+00 2014.6 2068 54.5
Lsat_1_v5_gn_4_42261 Lactuca sativa HOM05D004910 ORTHO05D006864 0.0e+00 1984.5 2168 52.4
THA.LOC104805731 Tarenaya hassleriana HOM05D004910 ORTHO05D006864 0.0e+00 1974.9 2178 52.6
ECA234G3354 Erigeron canadensis HOM05D004910 ORTHO05D006864 0.0e+00 1942.5 2158 52.4
EL10Ac1g00665 Beta vulgaris HOM05D004910 ORTHO05D006864 0.0e+00 1934.5 2282 49.7
Migut.N01670 Erythranthe guttata HOM05D004910 ORTHO05D006864 0.0e+00 1911.3 2189 50.8
vmacro13594 Vaccinium macrocarpon HOM05D004910 ORTHO05D006864 0.0e+00 1895.2 2134 50.8
Gohir.D11G236600 Gossypium hirsutum HOM05D004910 ORTHO05D006864 0.0e+00 1876.7 1889 57.4
Gohir.A11G225700 Gossypium hirsutum HOM05D004910 ORTHO05D006864 0.0e+00 1863.6 1890 57.3
HanXRQChr15g0492621 Helianthus annuus HOM05D004910 ORTHO05D006864 0.0e+00 1859.7 2166 50.5
QL04p053216 Quercus lobata HOM05D004910 ORTHO05D006864 0.0e+00 1857.4 1678 61.0
ATR0829G021 Amborella trichopoda HOM05D004910 ORTHO05D006864 0.0e+00 1833.2 2198 50.4
CSS0017393 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 0.0e+00 1829.3 1906 55.3
Aa31LG9G17970 Aethionema arabicum HOM05D004910 ORTHO05D006864 0.0e+00 1800.8 2257 49.1
Ah.05g177140 Amaranthus hybridus HOM05D004910 ORTHO05D006864 0.0e+00 1777.7 2128 49.2
AL7G44770 Arabidopsis lyrata HOM05D004910 ORTHO05D006864 0.0e+00 1771.1 2181 49.6
Hund26917 Selenicereus undatus HOM05D004910 ORTHO05D006864 0.0e+00 1741.9 2098 48.9
SGA_v2.0_scaffold4G02226 Striga asiatica HOM05D004910 ORTHO05D006864 0.0e+00 1734.5 2023 50.7
Peaxi162Scf00907g00121 Petunia axillaris HOM05D004910 ORTHO05D006864 0.0e+00 1703.3 1991 51.6
Solyc01g081430.4 Solanum lycopersicum HOM05D004910 ORTHO05D006864 0.0e+00 1694.1 1969 51.7
Lj9A617T56 Lonicera japonica HOM05D004910 ORTHO05D006864 0.0e+00 1678.3 1858 51.6
PGR083G1400 Punica granatum HOM05D004910 ORTHO05D006864 0.0e+00 1588.9 1539 55.8
Zm00001eb025470 Zea mays HOM05D004910 ORTHO05D006864 0.0e+00 1539.6 1989 45.1
AUR62038026 Chenopodium quinoa HOM05D004910 ORTHO05D006864 0.0e+00 1508.0 1756 51.2
Oeu002050.1 Olea europaea HOM05D004910 ORTHO05D006864 0.0e+00 1394.0 1671 50.2
AUR62014509 Chenopodium quinoa HOM05D004910 ORTHO05D006864 0.0e+00 1378.2 1702 49.5
Sc26g0002020 Simmondsia chinensis HOM05D004910 ORTHO05D006864 0.0e+00 1376.7 1698 49.6
arahy.Tifrunner.gnm1.ann1.X9S6DI Arachis hypogaea HOM05D004910 ORTHO05D006864 0.0e+00 1367.4 1577 51.9
Mapoly0032s0018 Marchantia polymorpha HOM05D004910 ORTHO05D006864 0.0e+00 1361.7 2296 39.9
CDE12G0362 Ceratophyllum demersum HOM05D004910 ORTHO05D006864 0.0e+00 1337.8 1800 43.8
CARHR216720 Cardamine hirsuta HOM05D004910 ORTHO05D006864 0.0e+00 1327.0 1709 48.7
Atru.chr2.1651 Acer truncatum HOM05D004910 ORTHO05D006864 0.0e+00 1295.4 1111 61.4
Pp3c7_26820 Physcomitrium patens HOM05D004910 ORTHO05D006864 0.0e+00 1223.4 2256 38.4
AagrBONN_evm.TU.Sc2ySwM_362.1947 Anthoceros agrestis HOM05D004910 ORTHO05D006864 0.0e+00 1191.8 1950 38.5
Psat4g216280 Pisum sativum HOM05D004910 ORTHO05D006864 0.0e+00 1075.5 1302 47.2
Atru.chr2.1650 Acer truncatum HOM05D004910 ORTHO05D006864 1.5e-311 1074.7 1031 60.1
arahy.Tifrunner.gnm1.ann1.L1X5S4 Arachis hypogaea HOM05D004910 ORTHO05D006864 1.5e-306 1057.4 1146 53.6
PSO063G6831 Papaver somniferum HOM05D004910 ORTHO05D006864 5.2e-291 1005.7 1133 54.3
PSO063G2935 Papaver somniferum HOM05D004910 ORTHO05D006864 9.9e-282 974.9 957 56.0
Cpa.g.sc73.58 Carica papaya HOM05D004910 ORTHO05D006864 3.0e-278 963.4 1026 52.2
SEGI_03249 Sequoiadendron giganteum HOM05D004910 ORTHO05D006864 3.9e-262 909.8 1382 40.8
Os04g0218600 Oryza sativa ssp. japonica HOM05D004910 ORTHO05D006864 6.9e-251 872.5 961 49.6
CBR_g49462 Chara braunii HOM05D004910 ORTHO05D006864 6.5e-225 786.2 2728 28.3
QL04p053202 Quercus lobata HOM05D004910 ORTHO05D006864 2.2e-212 744.6 507 74.0
SMO347G0286 Selaginella moellendorffii HOM05D004910 ORTHO05D006864 2.9e-201 707.6 1453 32.6
Actinidia21201 Actinidia chinensis HOM05D004910 ORTHO05D006864 3.1e-195 687.6 880 46.5
Psat4g215960 Pisum sativum HOM05D004910 ORTHO05D006864 1.9e-192 678.3 504 67.7
unitig_578.g16705 Utricularia gibba HOM05D004910 ORTHO05D006864 2.1e-191 674.9 635 55.7
Hma1.2p1_0353F.1_g133240 Hydrangea macrophylla HOM05D004910 ORTHO05D006864 1.8e-142 512.3 413 64.2
arahy.Tifrunner.gnm1.ann1.2JI1W5 Arachis hypogaea HOM05D004910 ORTHO05D006864 8.7e-137 493.4 377 65.8
PGR083G0666 Punica granatum HOM05D004910 ORTHO05D006864 4.3e-112 411.4 569 51.1
AUR62014510 Chenopodium quinoa HOM05D004910 ORTHO05D006864 9.7e-112 410.2 406 55.2
Prupe.2G100700 Prunus persica HOM05D004910 ORTHO05D006864 4.1e-110 404.8 358 60.1
AUR62038025 Chenopodium quinoa HOM05D004910 ORTHO05D006864 1.2e-109 403.3 406 54.7
CSS0010640 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 4.8e-103 381.3 342 59.1
Cpa.g.sc73.62 Carica papaya HOM05D004910 ORTHO05D006864 2.2e-100 372.5 216 83.3
Solyc01g081420.3 Solanum lycopersicum HOM05D004910 ORTHO05D006864 1.4e-94 353.2 216 78.2
Actinidia21200 Actinidia chinensis HOM05D004910 ORTHO05D006864 4.1e-94 351.7 342 59.6
Peaxi162Scf00907g00123 Petunia axillaris HOM05D004910 ORTHO05D006864 2.0e-88 332.8 230 71.7
Haze_15794 Corylus avellana HOM05D004910 ORTHO05D006864 1.0e-84 320.5 182 84.1
Cpa.g.sc73.57 Carica papaya HOM05D004910 ORTHO05D006864 1.3e-76 293.5 352 61.4
Actinidia31737 Actinidia chinensis HOM05D004910 ORTHO05D006864 3.4e-72 278.9 552 36.6
Psat4g216320 Pisum sativum HOM05D004910 ORTHO05D006864 1.2e-66 260.4 307 63.2
CDE12G0963 Ceratophyllum demersum HOM05D004910 ORTHO05D006864 1.2e-64 253.8 381 53.0
Cpa.g.sc73.59 Carica papaya HOM05D004910 ORTHO05D006864 7.8e-61 241.1 293 47.4
VMungo0331G1288 Vigna mungo HOM05D004910 ORTHO05D010195 3.1e-57 229.2 128 84.4
Gohir.A11G225602 Gossypium hirsutum HOM05D004910 ORTHO05D006864 1.2e-53 217.2 153 68.6
AagrBONN_evm.TU.Sc2ySwM_117.2552 Anthoceros agrestis HOM05D004910 ORTHO05D006864 1.7e-52 213.4 207 52.7
Rhsim07G0047400 Rhododendron simsii HOM05D004910 ORTHO05D006864 6.0e-45 188.3 183 61.7
PGSC0003DMG400031109 Solanum tuberosum HOM05D004910 ORTHO05D006864 3.9e-44 185.7 218 57.3
vmacro13596 Vaccinium macrocarpon HOM05D004910 ORTHO05D006864 3.9e-44 185.7 163 65.6
CSS0010022 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 1.2e-42 180.6 125 73.6
CSS0036242 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 1.6e-42 180.3 125 73.6
Lj9A617T57 Lonicera japonica HOM05D004910 ORTHO05D006864 8.1e-42 177.9 143 67.8
CSS0011325 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 5.1e-36 158.7 133 59.4
CSS0002002 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 8.1e-34 151.4 73 93.2
CSS0008041 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 8.1e-34 151.4 73 93.2
Os10g0581000 Oryza sativa ssp. japonica HOM05D004910 ORTHO05D006864 1.7e-31 143.7 346 43.4
SEGI_03241 Sequoiadendron giganteum HOM05D004910 ORTHO05D006864 3.9e-28 132.5 95 66.3
Actinidia21203 Actinidia chinensis HOM05D004910 ORTHO05D006864 5.1e-28 132.1 64 92.2
Psat6g100000 Pisum sativum HOM05D004910 ORTHO05D030483 9.0e-25 121.3 216 39.8
SEGI_03420 Sequoiadendron giganteum HOM05D004910 ORTHO05D006864 1.5e-24 120.6 201 45.3
FvH4_1g21580 Fragaria vesca HOM05D004910 ORTHO05D045425 8.4e-23 114.8 135 49.6
Os04g0218701 Oryza sativa ssp. japonica HOM05D004910 ORTHO05D006864 5.5e-22 112.1 388 40.2
RcHm_v2.0_Chr4g0408121 Rosa chinensis HOM05D004910 ORTHO05D006864 5.6e-19 102.1 84 61.9
ClCG00G006380 Citrullus lanatus HOM05D004910 ORTHO05D006864 1.4e-17 97.4 53 88.7
CSS0032650 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 7.6e-16 91.7 57 75.4
Psat0s999g0120 Pisum sativum HOM05D004910 ORTHO05D030483 5.5e-14 85.5 154 36.4
Dinv00622 Davidia involucrata HOM05D004910 ORTHO05D006864 1.2e-13 84.3 79 57.0
Nitab4.5_0011076g0010 Nicotiana tabacum HOM05D004910 ORTHO05D006864 1.6e-13 84.0 55 74.5
RcHm_v2.0_Chr4g0407941 Rosa chinensis HOM05D004910 ORTHO05D019205 2.1e-13 83.6 65 61.5
vmacro13595 Vaccinium macrocarpon HOM05D004910 ORTHO05D006864 1.1e-11 77.8 82 74.4
FAN23G3082 Fragaria x ananassa HOM05D004910 ORTHO05D045425 5.3e-09 68.9 64 53.1
Phvul.010G039400 Phaseolus vulgaris HOM05D004910 ORTHO05D006864 9.0e-09 68.2 55 65.5
Gohir.D06G038650 Gossypium hirsutum HOM05D004910 ORTHO05D030909 1.3e-07 64.3 55 54.5
Actinidia21202 Actinidia chinensis HOM05D004910 ORTHO05D030909 3.8e-07 62.8 49 69.4
FAN03G1104 Fragaria x ananassa HOM05D004910 ORTHO05D019205 5.5e-06 58.9 51 54.9


User provided reference genes

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