Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0008094 Sechium edule HOM05D005289 ORTHO05D006346 2.6e-76 288.9 170 100.0
ClCG11G012840 Citrullus lanatus HOM05D005289 ORTHO05D006346 2.9e-51 205.7 180 73.9
CsaV3_5G029240 Cucumis sativus L. HOM05D005289 ORTHO05D006346 1.4e-50 203.4 182 71.4
MELO3C011776.2 Cucumis melo HOM05D004444 ORTHO05D005246 5.4e-50 201.4 182 70.9
Sed0001576 Sechium edule HOM05D005289 ORTHO05D006346 3.9e-48 195.3 181 68.5
Carub.0006s2124 Capsella rubella HOM05D005289 ORTHO05D006346 7.6e-28 127.9 81 70.4
MD16G1005600 Malus domestica HOM05D005289 ORTHO05D006346 7.6e-28 127.9 83 69.9
Manes.16G039900 Manihot esculenta HOM05D005289 ORTHO05D006346 7.6e-28 127.9 78 73.1
Manes.16G040000 Manihot esculenta HOM05D005289 ORTHO05D006346 7.6e-28 127.9 78 73.1
Rhsim07G0056900 Rhododendron simsii HOM05D005289 ORTHO05D006346 7.6e-28 127.9 82 72.0
Cpa.g.sc248.7 Carica papaya HOM05D005289 ORTHO05D006346 9.9e-28 127.5 77 72.7
RhsimUnG0144200 Rhododendron simsii HOM05D005289 ORTHO05D006346 9.9e-28 127.5 82 72.0
Dinv09331 Davidia involucrata HOM05D005289 ORTHO05D006346 1.3e-27 127.1 83 72.3
Cfa018663 Carpinus fangiana HOM05D005289 ORTHO05D006346 1.7e-27 126.7 81 72.8
Dinv43423 Davidia involucrata HOM05D005289 ORTHO05D006346 1.7e-27 126.7 80 75.0
Manes.16G000200 Manihot esculenta HOM05D005289 ORTHO05D006346 1.7e-27 126.7 81 70.4
Nn7g38127 Nelumbo nucifera HOM05D005289 ORTHO05D006346 2.2e-27 126.3 82 70.7
vmacro13683 Vaccinium macrocarpon HOM05D005289 ORTHO05D006346 2.2e-27 126.3 82 72.0
THA.LOC104800596 Tarenaya hassleriana HOM05D005289 ORTHO05D006346 2.9e-27 125.9 78 70.5
CiPaw.16G000100 Carya illinoinensis HOM05D005289 ORTHO05D006346 3.8e-27 125.6 79 72.2
MD13G1000200 Malus domestica HOM05D005289 ORTHO05D006346 3.8e-27 125.6 83 68.7
arahy.Tifrunner.gnm1.ann1.CPCZ9R Arachis hypogaea HOM05D005289 ORTHO05D006346 4.9e-27 125.2 79 72.2
CANSAT78G0451 Cannabis sativa HOM05D005289 ORTHO05D006346 4.9e-27 125.2 83 67.5
Thhalv10005472m.g Eutrema salsugineum HOM05D005289 ORTHO05D006346 6.4e-27 124.8 76 72.4
AL6G34730 Arabidopsis lyrata HOM05D005289 ORTHO05D006346 1.1e-26 124.0 78 70.5
TAR376G0259 Trochodendron aralioides HOM05D005289 ORTHO05D006346 1.1e-26 124.0 79 69.6
BcaB01g05597 Brassica carinata HOM05D005289 ORTHO05D006346 1.4e-26 123.6 81 70.4
Manes.14G174500 Manihot esculenta HOM05D005289 ORTHO05D006346 1.4e-26 123.6 78 69.2
C03p04320 Brassica napus HOM05D005289 ORTHO05D006346 1.9e-26 123.2 81 69.1
BolC3t12965H Brassica oleracea HOM05D005289 ORTHO05D006346 1.9e-26 123.2 81 69.1
CSS0022575 Camellia sinensis var. sinensis HOM05D005289 ORTHO05D006346 1.9e-26 123.2 81 70.4
HPP92_004266 Vanilla planifolia HOM05D005289 ORTHO05D006346 1.9e-26 123.2 82 69.5
AT5G23440 Arabidopsis thaliana HOM05D005289 ORTHO05D006346 2.4e-26 122.9 78 69.2
A03p03840 Brassica napus HOM05D002331 ORTHO05D002624 2.4e-26 122.9 81 67.9
BraA03t09731Z Brassica rapa HOM05D002331 ORTHO05D002624 2.4e-26 122.9 81 67.9
Sp2g23720 Schrenkiella parvula HOM05D005289 ORTHO05D006346 3.2e-26 122.5 77 68.8
Gohir.D02G191500 Gossypium hirsutum HOM05D005289 ORTHO05D006346 4.1e-26 122.1 80 67.5
Gorai.005G214300 Gossypium raimondii HOM05D005289 ORTHO05D006346 4.1e-26 122.1 80 67.5
A02p40970 Brassica napus HOM05D005289 ORTHO05D006346 5.4e-26 121.7 166 42.2
BraA02t09045Z Brassica rapa HOM05D005289 ORTHO05D006346 5.4e-26 121.7 166 42.2
Eucgr.G02623 Eucalyptus grandis HOM05D005289 ORTHO05D006346 5.4e-26 121.7 79 72.2
HanXRQChr17g0563021 Helianthus annuus HOM05D005289 ORTHO05D006346 5.4e-26 121.7 80 67.5
BcaB01g05599 Brassica carinata HOM05D005289 ORTHO05D006346 7.1e-26 121.3 154 46.1
Gohir.A03G168400 Gossypium hirsutum HOM05D005289 ORTHO05D006346 7.1e-26 121.3 80 66.2
Lj2g0002318 Lotus japonicus HOM05D005289 ORTHO05D006346 7.1e-26 121.3 79 68.4
VMungo0464G1452 Vigna mungo HOM05D005289 ORTHO05D006346 9.2e-26 120.9 85 62.4
FAN07G0133 Fragaria x ananassa HOM05D005289 ORTHO05D006346 1.2e-25 120.6 78 67.9
FAN07G0378 Fragaria x ananassa HOM05D005289 ORTHO05D006346 1.2e-25 120.6 78 67.9
MBI03_g11910_MAGBIO Magnolia biondii HOM05D005289 ORTHO05D006346 1.2e-25 120.6 79 68.4
RcHm_v2.0_Chr4g0447301 Rosa chinensis HOM05D005289 ORTHO05D006346 1.2e-25 120.6 175 44.0
Duzib132G0443 Durio zibethinus HOM05D005289 ORTHO05D006346 1.6e-25 120.2 79 67.1
FvH4_4g37381 Fragaria vesca HOM05D005289 ORTHO05D006346 1.6e-25 120.2 78 67.9
FAN17G1203 Fragaria x ananassa HOM05D005289 ORTHO05D006346 1.6e-25 120.2 78 67.9
Hma1.2p1_2160F.1_g315560 Hydrangea macrophylla HOM05D005289 ORTHO05D006346 2.1e-25 119.8 80 72.5
TWI77G0922 Tripterygium wilfordii HOM05D005289 ORTHO05D006346 2.1e-25 119.8 82 65.9
C02p60860 Brassica napus HOM05D005289 ORTHO05D006346 2.7e-25 119.4 168 42.3
PSO063G1455 Papaver somniferum HOM05D005289 ORTHO05D006346 2.7e-25 119.4 78 67.9
PSO782G1364 Papaver somniferum HOM05D005289 ORTHO05D006346 2.7e-25 119.4 78 67.9
Duzib248G0326 Durio zibethinus HOM05D005289 ORTHO05D006346 3.5e-25 119.0 88 63.6
Aa31LG3G18150 Aethionema arabicum HOM05D005289 ORTHO05D006346 4.6e-25 118.6 174 46.6
AL6G18870 Arabidopsis lyrata HOM05D005289 ORTHO05D006346 4.6e-25 118.6 77 68.8
AT5G08410 Arabidopsis thaliana HOM05D005289 ORTHO05D006346 4.6e-25 118.6 77 68.8
Prupe.1G352600 Prunus persica HOM05D005289 ORTHO05D006346 4.6e-25 118.6 165 41.8
CARHR204630 Cardamine hirsuta HOM05D005289 ORTHO05D006346 6.0e-25 118.2 77 67.5
DCAR_006352 Daucus carota HOM05D005289 ORTHO05D006346 6.0e-25 118.2 83 68.7
CARHR190070 Cardamine hirsuta HOM05D005289 ORTHO05D006346 7.8e-25 117.9 81 65.4
PGR142G2143 Punica granatum HOM05D005289 ORTHO05D006346 7.8e-25 117.9 81 66.7
Sc06g0007700 Simmondsia chinensis HOM05D005289 ORTHO05D006346 7.8e-25 117.9 79 63.3
THA.LOC104819368 Tarenaya hassleriana HOM05D005289 ORTHO05D006346 7.8e-25 117.9 72 72.2
Carub.0006s0732 Capsella rubella HOM05D005289 ORTHO05D006346 1.0e-24 117.5 77 67.5
BolC2t12138H Brassica oleracea HOM05D005289 ORTHO05D006346 1.3e-24 117.1 168 42.3
Thhalv10014787m.g Eutrema salsugineum HOM05D005289 ORTHO05D006346 1.3e-24 117.1 76 67.1
QL01p000104 Quercus lobata HOM05D005289 ORTHO05D006346 1.7e-24 116.7 83 65.1
Ciclev10017019m.g Citrus clementina HOM05D005289 ORTHO05D006346 2.3e-24 116.3 83 66.3
Lsat_1_v5_gn_4_31280 Lactuca sativa HOM05D007122 ORTHO05D008918 2.3e-24 116.3 80 63.8
Lsat_1_v5_gn_4_31381 Lactuca sativa HOM05D005289 ORTHO05D006346 5.1e-24 115.2 80 62.5
Ah.15g093460 Amaranthus hybridus HOM05D005289 ORTHO05D006346 8.6e-24 114.4 79 65.8
Aqoxy3G04359 Aquilegia oxysepala HOM05D005289 ORTHO05D006346 8.6e-24 114.4 82 64.6
Phvul.004G000400 Phaseolus vulgaris HOM05D005289 ORTHO05D006346 1.1e-23 114.0 85 60.0
Sp6g34530 Schrenkiella parvula HOM05D005289 ORTHO05D006346 1.1e-23 114.0 72 69.4
Zm00001eb248360 Zea mays HOM05D005289 ORTHO05D006346 1.5e-23 113.6 83 63.9
Atru.chr11.6 Acer truncatum HOM05D005289 ORTHO05D006346 2.5e-23 112.8 77 63.6
Lj9P634T19 Lonicera japonica HOM05D005289 ORTHO05D006346 2.5e-23 112.8 82 63.4
Solyc01g087520.3 Solanum lycopersicum HOM05D005289 ORTHO05D006346 2.5e-23 112.8 84 65.5
Sopen01g034490 Solanum pennellii HOM05D005289 ORTHO05D006346 4.3e-23 112.1 84 65.5
PGSC0003DMG400006858 Solanum tuberosum HOM05D005289 ORTHO05D006346 4.3e-23 112.1 84 65.5
CAN.G219.47 Capsicum annuum HOM05D005289 ORTHO05D006346 5.6e-23 111.7 84 63.1
SEGI_30396 Sequoiadendron giganteum HOM05D005289 ORTHO05D006346 5.6e-23 111.7 78 66.7
Zm00001eb075910 Zea mays HOM05D005289 ORTHO05D006346 5.6e-23 111.7 81 63.0
Ca_04131_v3 Cicer arietinum L. HOM05D005289 ORTHO05D006346 9.6e-23 110.9 81 65.4
ECA234G0076 Erigeron canadensis HOM05D005289 ORTHO05D006346 1.6e-22 110.2 80 63.8
CDE11G0284 Ceratophyllum demersum HOM05D005289 ORTHO05D006346 2.1e-22 109.8 78 61.5
Cc02_g28180 Coffea canephora HOM05D005289 ORTHO05D006346 2.1e-22 109.8 83 66.3
Os04g0528800 Oryza sativa ssp. japonica HOM05D005289 ORTHO05D006346 2.1e-22 109.8 83 61.4
Hund08591 Selenicereus undatus HOM05D005289 ORTHO05D006346 2.1e-22 109.8 78 61.5
Glyma.05G000300 Glycine max HOM05D005289 ORTHO05D006346 2.8e-22 109.4 85 57.6
Actinidia31077 Actinidia chinensis HOM05D005289 ORTHO05D006346 3.6e-22 109.0 77 66.2
Zm00001eb185670 Zea mays HOM05D005289 ORTHO05D006346 3.6e-22 109.0 83 61.4
Os02g0638300 Oryza sativa ssp. japonica HOM05D005289 ORTHO05D006346 4.7e-22 108.6 83 57.8
Glyma.19G000200 Glycine max HOM05D005289 ORTHO05D006346 1.1e-21 107.5 80 62.5
Nitab4.5_0000707g0260 Nicotiana tabacum HOM05D005289 ORTHO05D006346 2.4e-21 106.3 83 63.9
SalBow6G0941 Salvia bowleyana HOM05D005289 ORTHO05D006346 3.1e-21 105.9 80 67.5
Thecc.02G151000 Theobroma cacao HOM05D005289 ORTHO05D006346 3.1e-21 105.9 78 59.0
AagrBONN_evm.TU.Sc2ySwM_344.750 Anthoceros agrestis HOM05D005289 ORTHO05D006346 5.2e-21 105.1 77 64.9
Oeu049492.1 Olea europaea HOM05D005289 ORTHO05D006346 8.9e-21 104.4 84 64.3
CDE05G2330 Ceratophyllum demersum HOM05D005289 ORTHO05D006346 1.2e-20 104.0 76 59.2
Medtr6g004100 Medicago truncatula HOM05D005289 ORTHO05D006346 1.2e-20 104.0 87 59.8
SGA_v2.0_scaffold24G10667 Striga asiatica HOM05D005289 ORTHO05D006346 1.2e-20 104.0 84 63.1
TPR.G25213 Trifolium pratense HOM05D005289 ORTHO05D006346 1.5e-20 103.6 84 64.3
Nitab4.5_0006228g0010 Nicotiana tabacum HOM05D005289 ORTHO05D006346 2.0e-20 103.2 83 62.7
PGR044G1862 Punica granatum HOM05D005289 ORTHO05D006346 2.6e-20 102.8 81 61.7
Migut.N01609 Erythranthe guttata HOM05D005289 ORTHO05D006346 3.4e-20 102.4 84 61.9
Oeu049005.1 Olea europaea HOM05D005289 ORTHO05D006346 4.4e-20 102.1 80 65.0
MSTRG.5030 Avicennia marina HOM05D005289 ORTHO05D006346 5.8e-20 101.7 84 61.9
Eucgr.J00323 Eucalyptus grandis HOM05D005289 ORTHO05D006346 5.8e-20 101.7 79 57.0
Gohir.A12G011400 Gossypium hirsutum HOM05D005289 ORTHO05D006346 5.8e-20 101.7 68 64.7
ATR0124G002 Amborella trichopoda HOM05D005289 ORTHO05D006346 7.6e-20 101.3 84 54.8
AUR62028426 Chenopodium quinoa HOM05D005289 ORTHO05D006346 7.6e-20 101.3 80 57.5
AagrBONN_evm.TU.Sc2ySwM_368.462 Anthoceros agrestis HOM05D000595 ORTHO05D006346 1.7e-19 100.1 71 64.8
MD10G1109200 Malus domestica HOM05D005289 ORTHO05D006346 2.9e-19 99.4 72 62.5
Gohir.D12G011800 Gossypium hirsutum HOM05D005289 ORTHO05D006346 3.8e-19 99.0 66 63.6
Gorai.008G011800 Gossypium raimondii HOM05D005289 ORTHO05D006346 3.8e-19 99.0 66 63.6
SMO367G0363 Selaginella moellendorffii HOM05D005289 ORTHO05D006346 6.4e-19 98.2 77 57.1
AUR62038497 Chenopodium quinoa HOM05D005289 ORTHO05D006346 8.4e-19 97.8 80 57.5
unitig_699.g19828 Utricularia gibba HOM05D005289 ORTHO05D006346 1.9e-18 96.7 82 59.8
Oeu006561.1 Olea europaea HOM05D005289 ORTHO05D006346 7.1e-18 94.7 84 58.3
Potri.010G255500 Populus trichocarpa HOM05D005289 ORTHO05D006346 1.2e-17 94.0 79 58.2
Sabra10G0198900 Salix brachista HOM05D005289 ORTHO05D006346 1.2e-17 94.0 82 57.3
Sabra08G0000100 Salix brachista HOM05D005289 ORTHO05D006346 4.6e-17 92.0 79 58.2
Mapoly0005s0050 Marchantia polymorpha HOM05D005289 ORTHO05D006346 7.8e-17 91.3 76 52.6
Potri.008G002200 Populus trichocarpa HOM05D005289 ORTHO05D006346 1.0e-16 90.9 79 57.0
CDE01G0630 Ceratophyllum demersum HOM05D000556 ORTHO05D006346 1.7e-16 90.1 63 61.9
A06p34430 Brassica napus HOM05D005289 ORTHO05D006346 3.0e-16 89.4 74 58.1
BraA06t26372Z Brassica rapa HOM05D005289 ORTHO05D006346 3.0e-16 89.4 74 58.1
Pp3c26_13800 Physcomitrium patens HOM05D005289 ORTHO05D006346 3.3e-15 85.9 83 53.0
Pp3c26_13840 Physcomitrium patens HOM05D005289 ORTHO05D006346 3.3e-15 85.9 83 53.0
Peaxi162Scf00019g00006 Petunia axillaris HOM05D005289 ORTHO05D006346 4.3e-15 85.5 137 40.9
CBR_g32063 Chara braunii HOM05D005289 ORTHO05D006346 9.6e-15 84.3 77 54.5
Pp3c4_31020 Physcomitrium patens HOM05D005289 ORTHO05D006346 1.4e-13 80.5 76 50.0
MSTRG.28061 Avicennia marina HOM05D005289 ORTHO05D006346 2.4e-13 79.7 57 63.2
EL10Ac1g01282 Beta vulgaris HOM05D005289 ORTHO05D006346 4.0e-13 79.0 63 57.1
Pp3c4_29510 Physcomitrium patens HOM05D005289 ORTHO05D006346 4.5e-12 75.5 73 47.9
Psat1g053320 Pisum sativum HOM05D005289 ORTHO05D006346 1.3e-08 63.9 82 47.6
Cre16.g687294 Chlamydomonas reinhardtii HOM05D005289 ORTHO05D006346 5.1e-08 62.0 80 45.0
Ah.08g214580 Amaranthus hybridus HOM05D005289 ORTHO05D006346 6.2e-06 55.1 43 58.1


User provided reference genes

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