Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0008038 Sechium edule HOM05D006196 ORTHO05D007758 4.7e-191 671.0 335 100.0
ClCG08G008290 Citrullus lanatus HOM05D006196 ORTHO05D007758 6.4e-156 554.3 340 81.5
Sed0021157 Sechium edule HOM05D006196 ORTHO05D007758 9.3e-155 550.4 354 78.8
MELO3C019897.2 Cucumis melo HOM05D006196 ORTHO05D007758 3.0e-153 545.4 339 79.6
CsaV3_6G004260 Cucumis sativus L. HOM05D006196 ORTHO05D007758 2.4e-150 535.8 339 77.9
Haze_03294 Corylus avellana HOM05D006196 ORTHO05D007758 5.3e-110 401.7 336 61.6
QL04p046737 Quercus lobata HOM05D006196 ORTHO05D007758 4.4e-104 382.1 354 57.9
CiPaw.13G040700 Carya illinoinensis HOM05D006196 ORTHO05D007758 6.3e-103 378.3 336 59.8
CSS0023098 Camellia sinensis var. sinensis HOM05D006196 ORTHO05D007758 1.8e-102 376.7 336 58.9
Lj2C33T17 Lonicera japonica HOM05D006196 ORTHO05D007758 1.8e-102 376.7 332 60.2
TAR623G1022 Trochodendron aralioides HOM05D006196 ORTHO05D007758 3.1e-102 375.9 324 61.1
Oeu026604.1 Olea europaea HOM05D006196 ORTHO05D007758 5.4e-102 375.2 333 56.8
Hma1.2p1_0457F.1_g156990 Hydrangea macrophylla HOM05D006196 ORTHO05D007758 9.1e-102 374.4 306 63.4
Rhsim03G0097800 Rhododendron simsii HOM05D006196 ORTHO05D007758 1.2e-101 374.0 344 58.7
Thecc.10G115000 Theobroma cacao HOM05D006196 ORTHO05D007758 1.2e-101 374.0 332 58.7
Atru.chr12.1044 Acer truncatum HOM05D006196 ORTHO05D007758 2.7e-101 372.9 324 61.4
Manes.07G086900 Manihot esculenta HOM05D006196 ORTHO05D007758 4.5e-101 372.1 335 60.3
Actinidia18628 Actinidia chinensis HOM05D006196 ORTHO05D007758 6.5e-100 368.2 332 58.7
Cpa.g.sc56.1 Carica papaya HOM05D006196 ORTHO05D007758 1.2e-98 364.0 332 56.6
Manes.10G062200 Manihot esculenta HOM05D006196 ORTHO05D007758 1.6e-98 363.6 333 59.2
THA.LOC104811342 Tarenaya hassleriana HOM05D006196 ORTHO05D007758 6.1e-98 361.7 362 53.9
Duzib114G0383 Durio zibethinus HOM05D006196 ORTHO05D007758 1.8e-97 360.1 333 58.0
Nitab4.5_0003590g0020 Nicotiana tabacum HOM05D006196 ORTHO05D007758 1.8e-97 360.1 334 59.0
Sabra10G0187700 Salix brachista HOM05D006196 ORTHO05D007758 3.0e-97 359.4 332 57.5
Potri.010G239700 Populus trichocarpa HOM05D006196 ORTHO05D007758 4.0e-97 359.0 332 56.3
Lj5g0013601 Lotus japonicus HOM05D006196 ORTHO05D007758 6.8e-97 358.2 333 58.9
Nitab4.5_0002586g0080 Nicotiana tabacum HOM05D006196 ORTHO05D007758 1.2e-96 357.5 335 57.9
PGSC0003DMG400023969 Solanum tuberosum HOM05D006196 ORTHO05D007758 1.5e-96 357.1 331 57.4
COL.COLO4_29746 Corchorus olitorius HOM05D006196 ORTHO05D007758 2.0e-96 356.7 323 56.3
Solyc11g006830.2 Solanum lycopersicum HOM05D006196 ORTHO05D007758 2.0e-96 356.7 321 58.9
Sopen11g002750 Solanum pennellii HOM05D006196 ORTHO05D007758 2.6e-96 356.3 321 58.9
Cc02_g09600 Coffea canephora HOM05D006196 ORTHO05D007758 4.4e-96 355.5 337 55.2
Lsat_1_v5_gn_2_104380 Lactuca sativa HOM05D006196 ORTHO05D007758 1.3e-95 354.0 311 59.2
Migut.F00871 Erythranthe guttata HOM05D006196 ORTHO05D007758 2.8e-95 352.8 335 54.3
Potri.008G019700 Populus trichocarpa HOM05D006196 ORTHO05D007758 4.1e-94 349.0 317 57.4
MSTRG.27569 Avicennia marina HOM05D006196 ORTHO05D007758 9.2e-94 347.8 326 54.6
CANSAT56G0980 Cannabis sativa HOM05D006196 ORTHO05D007758 2.0e-93 346.7 331 57.7
MSTRG.9056 Avicennia marina HOM05D006196 ORTHO05D007758 2.7e-93 346.3 338 54.1
ECA238G1493 Erigeron canadensis HOM05D006196 ORTHO05D007758 2.7e-93 346.3 309 59.5
CAN.G645.29 Capsicum annuum HOM05D006196 ORTHO05D007758 3.5e-93 345.9 331 56.5
Gorai.012G020000 Gossypium raimondii HOM05D006196 ORTHO05D007758 5.9e-93 345.1 326 55.8
Sabra08G0013000 Salix brachista HOM05D006196 ORTHO05D007758 7.8e-93 344.7 327 56.0
Medtr1g111960 Medicago truncatula HOM05D006196 ORTHO05D007758 1.7e-92 343.6 342 54.1
Psat0s1903g0040 Pisum sativum HOM05D006196 ORTHO05D007758 1.7e-92 343.6 345 55.4
Gohir.D04G017300 Gossypium hirsutum HOM05D006196 ORTHO05D007758 2.9e-92 342.8 326 55.8
Glyma.20G111300 Glycine max HOM05D006196 ORTHO05D007758 3.8e-92 342.4 341 56.3
HanXRQChr11g0342081 Helianthus annuus HOM05D006196 ORTHO05D007758 3.8e-92 342.4 305 59.3
HanXRQChr07g0194291 Helianthus annuus HOM05D006196 ORTHO05D007758 5.0e-92 342.0 311 57.9
AT3G54290 Arabidopsis thaliana HOM05D006196 ORTHO05D007758 6.6e-92 341.7 337 53.4
Gohir.A05G398600 Gossypium hirsutum HOM05D006196 ORTHO05D007758 1.9e-91 340.1 326 55.5
Lalb_Chr06g0166391 Lupinus albus HOM05D006196 ORTHO05D007758 2.5e-91 339.7 338 55.0
TWI38G1704 Tripterygium wilfordii HOM05D006196 ORTHO05D007758 2.5e-91 339.7 322 57.5
Aa31sc392G30 Aethionema arabicum HOM05D006196 ORTHO05D007758 9.5e-91 337.8 334 52.7
arahy.Tifrunner.gnm1.ann1.EL78PJ Arachis hypogaea HOM05D006196 ORTHO05D007758 9.5e-91 337.8 338 53.8
Ca_25660_v3 Cicer arietinum L. HOM05D006196 ORTHO05D007758 1.2e-90 337.4 342 53.5
TPR.G2427 Trifolium pratense HOM05D006196 ORTHO05D007758 1.2e-90 337.4 343 53.9
Thhalv10010495m.g Eutrema salsugineum HOM05D006196 ORTHO05D007758 4.7e-90 335.5 344 52.3
AL5G35330 Arabidopsis lyrata HOM05D006196 ORTHO05D007758 6.1e-90 335.1 340 54.1
CARHR164220 Cardamine hirsuta HOM05D006196 ORTHO05D007758 6.1e-90 335.1 353 51.6
arahy.Tifrunner.gnm1.ann1.N25XM0 Arachis hypogaea HOM05D006196 ORTHO05D007758 8.0e-90 334.7 338 53.0
SalBow6G5730 Salvia bowleyana HOM05D006196 ORTHO05D007758 1.0e-89 334.3 336 51.8
Carub.0005s2088 Capsella rubella HOM05D006196 ORTHO05D007758 1.8e-89 333.6 352 52.3
SGA_v2.0_scaffold13G06435 Striga asiatica HOM05D006196 ORTHO05D007758 3.0e-89 332.8 385 48.8
Sp5g08100 Schrenkiella parvula HOM05D006196 ORTHO05D007758 1.2e-88 330.9 341 51.3
VMungo0720G0291 Vigna mungo HOM05D006196 ORTHO05D007758 2.6e-88 329.7 338 53.3
Phvul.007G023000 Phaseolus vulgaris HOM05D006196 ORTHO05D007758 3.4e-88 329.3 342 54.4
BcaC02g09075 Brassica carinata HOM05D006196 ORTHO05D007758 4.4e-88 328.9 320 53.1
Glyma.10G278400 Glycine max HOM05D006196 ORTHO05D007758 5.7e-88 328.6 342 54.1
BraA04t16248Z Brassica rapa HOM05D006196 ORTHO05D007758 2.2e-87 326.6 318 54.4
MBI01_g16486_MAGBIO Magnolia biondii HOM05D006196 ORTHO05D007758 3.7e-87 325.9 337 52.5
unitig_37.g12349 Utricularia gibba HOM05D006196 ORTHO05D007758 4.9e-87 325.5 337 51.3
A04p05460 Brassica napus HOM05D006196 ORTHO05D007758 2.4e-86 323.2 318 53.5
Medtr1g050385 Medicago truncatula HOM05D006196 ORTHO05D007758 7.0e-86 321.6 356 50.8
Dinv10931 Davidia involucrata HOM05D006196 ORTHO05D007758 3.5e-85 319.3 261 62.8
BcaB02g08483 Brassica carinata HOM05D006196 ORTHO05D007758 4.6e-85 318.9 324 52.2
C04p38140 Brassica napus HOM05D006196 ORTHO05D007758 7.8e-85 318.2 321 52.6
GSVIVG01010724001 Vitis vinifera HOM05D006196 ORTHO05D007758 1.0e-84 317.8 257 62.3
BolC8t50558H Brassica oleracea HOM05D006196 ORTHO05D007758 1.1e-83 314.3 350 48.6
C08p29520 Brassica napus HOM05D006196 ORTHO05D007758 1.5e-83 313.9 350 48.3
Psat6g093840 Pisum sativum HOM05D006196 ORTHO05D007758 2.5e-83 313.2 347 51.6
A09p47290 Brassica napus HOM05D006196 ORTHO05D007758 3.3e-83 312.8 286 55.6
BraA09t40190Z Brassica rapa HOM05D006196 ORTHO05D007758 4.3e-83 312.4 286 55.2
Hund06787 Selenicereus undatus HOM05D006196 ORTHO05D007758 4.3e-83 312.4 323 53.6
PSO801G0620 Papaver somniferum HOM05D006196 ORTHO05D007758 5.6e-83 312.0 338 50.0
PSO339G1429 Papaver somniferum HOM05D006196 ORTHO05D007758 7.3e-83 311.6 341 50.1
TPR.G10627 Trifolium pratense HOM05D006196 ORTHO05D007758 1.6e-82 310.5 360 49.7
Peaxi162Scf00173g00018 Petunia axillaris HOM05D006196 ORTHO05D007758 2.1e-82 310.1 284 58.8
MD07G1059000 Malus domestica HOM05D006196 ORTHO05D007758 3.1e-81 306.2 359 49.6
CDE08G0664 Ceratophyllum demersum HOM05D006196 ORTHO05D007758 4.0e-81 305.8 290 52.1
Lj6g0028083 Lotus japonicus HOM05D006196 ORTHO05D007758 2.0e-80 303.5 350 50.9
Glyma.10G111100 Glycine max HOM05D006196 ORTHO05D007758 7.5e-80 301.6 352 49.7
MD07G1059300 Malus domestica HOM05D006196 ORTHO05D007758 7.5e-80 301.6 365 48.5
Prupe.2G067800 Prunus persica HOM05D006196 ORTHO05D007758 9.8e-80 301.2 355 51.3
Sc09g0005310 Simmondsia chinensis HOM05D006196 ORTHO05D007758 5.4e-78 295.4 318 49.7
DCAR_019003 Daucus carota HOM05D006196 ORTHO05D007758 1.6e-77 293.9 337 47.5
Ah.13g074540 Amaranthus hybridus HOM05D006196 ORTHO05D007758 2.7e-77 293.1 347 48.4
Lalb_Chr01g0010431 Lupinus albus HOM05D006196 ORTHO05D007758 1.7e-76 290.4 384 45.1
Ah.06g186650 Amaranthus hybridus HOM05D006196 ORTHO05D007758 7.3e-75 285.0 341 46.6
Ciclev10015947m.g Citrus clementina HOM05D006196 ORTHO05D007758 8.6e-68 261.5 313 48.6
BcaB01g00209 Brassica carinata HOM05D006196 ORTHO05D007758 3.8e-63 246.1 279 48.0
ATR0820G221 Amborella trichopoda HOM05D006196 ORTHO05D007758 4.7e-58 229.2 206 55.8
BolC4t25389H Brassica oleracea HOM05D006196 ORTHO05D007758 1.7e-55 220.7 193 55.4
unitig_46.g18638 Utricularia gibba HOM05D006196 ORTHO05D007758 1.7e-52 210.7 180 60.6
HPP92_026086 Vanilla planifolia HOM05D006196 ORTHO05D007758 3.0e-52 209.9 305 41.6
HPP92_025137 Vanilla planifolia HOM05D006196 ORTHO05D007758 1.8e-49 200.7 305 40.7
Os01g0861700 Oryza sativa ssp. japonica HOM05D006196 ORTHO05D007758 1.2e-45 188.0 319 39.8
Zm00001eb147080 Zea mays HOM05D006196 ORTHO05D007758 3.5e-45 186.4 317 38.8
SMO146G0289 Selaginella moellendorffii HOM05D006196 ORTHO05D007758 2.5e-43 180.3 246 41.5
Ca_20266_v3 Cicer arietinum L. HOM05D006196 ORTHO05D007758 2.8e-42 176.8 216 45.4
Pp3c12_15440 Physcomitrium patens HOM05D006196 ORTHO05D007758 9.3e-38 161.8 202 44.1
Pp3c25_11830 Physcomitrium patens HOM05D006196 ORTHO05D007758 1.8e-36 157.5 200 42.5
Pp3c16_23080 Physcomitrium patens HOM05D006196 ORTHO05D007758 3.9e-36 156.4 200 42.0
Mapoly0016s0155 Marchantia polymorpha HOM05D006196 ORTHO05D007758 6.7e-36 155.6 210 40.5
AagrBONN_evm.TU.Sc2ySwM_228.4853 Anthoceros agrestis HOM05D006196 ORTHO05D007758 3.3e-35 153.3 242 40.1
Pp3c13_16840 Physcomitrium patens HOM05D006196 ORTHO05D007758 5.6e-35 152.5 198 42.9
Pp3c3_21020 Physcomitrium patens HOM05D006196 ORTHO05D007758 3.1e-33 146.7 197 42.6
Pp3c6_4750 Physcomitrium patens HOM05D006196 ORTHO05D007758 9.0e-33 145.2 261 33.7
SMO198G0051 Selaginella moellendorffii HOM05D006196 ORTHO05D007758 8.4e-31 138.7 217 38.7
Pp3c16_23090 Physcomitrium patens HOM05D006196 ORTHO05D007758 2.5e-30 137.1 214 36.4
Pp3c25_11860 Physcomitrium patens HOM05D006196 ORTHO05D007758 5.9e-24 115.9 146 41.1
arahy.Tifrunner.gnm1.ann1.5GK804 Arachis hypogaea HOM05D006196 ORTHO05D007758 2.7e-21 107.1 123 51.2
CBR_g31351 Chara braunii HOM05D006196 ORTHO05D007758 8.8e-20 102.1 151 36.4
Actinidia02755 Actinidia chinensis HOM05D006196 ORTHO05D007758 4.1e-17 93.2 88 58.0
unitig_46.g18639 Utricularia gibba HOM05D006196 ORTHO05D007758 1.2e-16 91.7 101 45.5
arahy.Tifrunner.gnm1.ann1.K1D1LI Arachis hypogaea HOM05D006196 ORTHO05D007758 2.6e-16 90.5 119 48.7
Zm00001eb366830 Zea mays HOM05D006196 ORTHO05D007758 2.6e-16 90.5 129 42.6


User provided reference genes

Program Settings