Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0008008 Sechium edule HOM05D006127 ORTHO05D007465 0.0e+00 1090.9 555 100.0
CsaV3_5G001020 Cucumis sativus L. HOM05D006127 ORTHO05D007465 6.1e-268 927.2 555 82.7
ClCG01G000890 Citrullus lanatus HOM05D006127 ORTHO05D007465 1.1e-264 916.4 555 82.5
MELO3C005842.2 Cucumis melo HOM05D006127 ORTHO05D007465 1.9e-261 905.6 556 81.1
Cfa016302 Carpinus fangiana HOM05D006127 ORTHO05D007465 4.4e-194 681.8 551 64.1
Prupe.2G302400 Prunus persica HOM05D006127 ORTHO05D007465 7.3e-189 664.5 550 62.5
MD07G1280200 Malus domestica HOM05D006127 ORTHO05D007465 9.6e-189 664.1 552 63.2
QL09p012458 Quercus lobata HOM05D006127 ORTHO05D007465 2.4e-184 649.4 540 61.5
Thecc.03G186000 Theobroma cacao HOM05D006127 ORTHO05D007465 2.4e-184 649.4 555 61.6
Gorai.003G069400 Gossypium raimondii HOM05D006127 ORTHO05D007465 7.1e-184 647.9 559 62.8
COL.COLO4_30292 Corchorus olitorius HOM05D006127 ORTHO05D007465 9.3e-184 647.5 555 61.6
Ciclev10004691m.g Citrus clementina HOM05D006127 ORTHO05D007465 1.6e-183 646.7 552 61.8
Gohir.D11G229300 Gossypium hirsutum HOM05D006127 ORTHO05D007465 6.0e-183 644.8 559 62.3
Manes.06G153500 Manihot esculenta HOM05D006127 ORTHO05D007465 6.0e-183 644.8 564 59.6
Gohir.A11G225200 Gossypium hirsutum HOM05D006127 ORTHO05D007465 5.1e-182 641.7 562 62.1
Dinv35267 Davidia involucrata HOM05D006127 ORTHO05D007465 4.0e-179 632.1 560 59.6
CSS0002355 Camellia sinensis var. sinensis HOM05D006127 ORTHO05D007465 5.3e-179 631.7 551 60.4
CiPaw.06G004100 Carya illinoinensis HOM05D006127 ORTHO05D007465 6.9e-179 631.3 538 61.0
Sabra17G0124200 Salix brachista HOM05D006127 ORTHO05D007465 1.3e-177 627.1 562 59.4
PGR044G2596 Punica granatum HOM05D006127 ORTHO05D007465 3.8e-177 625.5 534 62.4
CSS0021566 Camellia sinensis var. sinensis HOM05D006127 ORTHO05D007465 1.1e-176 624.0 555 59.8
Potri.017G148900 Populus trichocarpa HOM05D006127 ORTHO05D007465 1.2e-175 620.5 557 58.7
TWI23G0320 Tripterygium wilfordii HOM05D006127 ORTHO05D007465 2.7e-175 619.4 531 62.0
Atru.chr1.338 Acer truncatum HOM05D006127 ORTHO05D007465 1.8e-174 616.7 531 61.6
MD01G1210100 Malus domestica HOM05D006127 ORTHO05D007465 5.1e-174 615.1 439 69.5
Dinv28380 Davidia involucrata HOM05D006127 ORTHO05D007465 6.7e-174 614.8 563 59.5
Actinidia34165 Actinidia chinensis HOM05D006127 ORTHO05D007465 1.9e-173 613.2 557 59.4
Nitab4.5_0000472g0230 Nicotiana tabacum HOM05D006127 ORTHO05D007465 2.5e-173 612.8 455 66.6
Potri.004G072100 Populus trichocarpa HOM05D006127 ORTHO05D007465 7.4e-173 611.3 513 62.6
Peaxi162Scf00444g00314 Petunia axillaris HOM05D006127 ORTHO05D007465 2.8e-172 609.4 455 67.0
Haze_00059 Corylus avellana HOM05D006127 ORTHO05D007465 1.8e-171 606.7 550 59.6
Lalb_Chr01g0009501 Lupinus albus HOM05D006127 ORTHO05D007465 3.1e-171 605.9 535 59.3
Glyma.09G129300 Glycine max HOM05D006127 ORTHO05D007465 4.0e-171 605.5 547 58.3
Phvul.004G105900 Phaseolus vulgaris HOM05D006127 ORTHO05D007465 4.0e-171 605.5 537 59.6
Lj2g0027649 Lotus japonicus HOM05D006127 ORTHO05D007465 3.4e-170 602.4 556 57.7
Eucgr.A02719 Eucalyptus grandis HOM05D006127 ORTHO05D007465 2.2e-169 599.7 570 57.7
PGSC0003DMG400009503 Solanum tuberosum HOM05D006127 ORTHO05D007465 4.9e-169 598.6 455 65.1
Nitab4.5_0001331g0020 Nicotiana tabacum HOM05D006127 ORTHO05D007465 1.9e-168 596.7 464 64.7
Solyc03g007620.3 Solanum lycopersicum HOM05D006127 ORTHO05D007465 2.4e-168 596.3 455 64.8
TAR374G0777 Trochodendron aralioides HOM05D006127 ORTHO05D007465 4.2e-168 595.5 471 64.1
Sopen03g003570 Solanum pennellii HOM05D006127 ORTHO05D007465 5.5e-168 595.1 455 64.8
CiPaw.05G261300 Carya illinoinensis HOM05D006127 ORTHO05D007465 9.3e-168 594.3 435 66.7
THA.LOC104818243 Tarenaya hassleriana HOM05D006127 ORTHO05D007465 2.1e-167 593.2 542 58.9
AT5G62650 Arabidopsis thaliana HOM05D006127 ORTHO05D007465 2.7e-167 592.8 523 59.8
AL8G39630 Arabidopsis lyrata HOM05D006127 ORTHO05D007465 7.9e-167 591.3 522 59.8
CAN.G236.3 Capsicum annuum HOM05D006127 ORTHO05D007465 1.8e-166 590.1 455 64.6
Gorai.006G199600 Gossypium raimondii HOM05D006127 ORTHO05D007465 3.0e-166 589.3 549 57.4
Sabra04G0047500 Salix brachista HOM05D006127 ORTHO05D007465 5.1e-166 588.6 609 53.5
Ca_26803_v3 Cicer arietinum L. HOM05D006127 ORTHO05D007465 4.3e-165 585.5 559 56.4
Gohir.D09G177600 Gossypium hirsutum HOM05D006127 ORTHO05D007465 9.6e-165 584.3 547 56.9
Medtr6g053110 Medicago truncatula HOM05D006127 ORTHO05D007465 1.6e-164 583.6 547 57.2
Carub.0008s2341 Capsella rubella HOM05D006127 ORTHO05D007465 2.1e-164 583.2 524 59.2
MSTRG.8699 Avicennia marina HOM05D006127 ORTHO05D007465 2.8e-164 582.8 553 56.1
RcHm_v2.0_Chr1g0378611 Rosa chinensis HOM05D006127 ORTHO05D007465 2.8e-164 582.8 527 60.0
Thhalv10003967m.g Eutrema salsugineum HOM05D006127 ORTHO05D007465 4.8e-164 582.0 538 57.4
Sp2g25830 Schrenkiella parvula HOM05D006127 ORTHO05D007465 1.4e-163 580.5 539 57.5
arahy.Tifrunner.gnm1.ann1.HXNP43 Arachis hypogaea HOM05D006127 ORTHO05D007465 4.0e-163 578.9 555 57.5
arahy.Tifrunner.gnm1.ann1.AR9FJK Arachis hypogaea HOM05D006127 ORTHO05D007465 9.0e-163 577.8 565 56.8
Aa31LG11G990 Aethionema arabicum HOM05D006127 ORTHO05D007465 1.2e-162 577.4 563 56.0
CARHR276460 Cardamine hirsuta HOM05D006127 ORTHO05D007465 4.5e-162 575.5 536 57.8
A06p29390 Brassica napus HOM05D006127 ORTHO05D007465 1.7e-161 573.5 515 58.1
BraA06t25889Z Brassica rapa HOM05D006127 ORTHO05D007465 2.9e-161 572.8 515 57.9
FAN10G2357 Fragaria x ananassa HOM05D006127 ORTHO05D007465 6.5e-161 571.6 523 58.5
BolC3t18667H Brassica oleracea HOM05D006127 ORTHO05D007465 8.4e-161 571.2 515 58.1
C03p64120 Brassica napus HOM05D006127 ORTHO05D007465 1.1e-160 570.9 515 58.1
FAN10G0315 Fragaria x ananassa HOM05D006127 ORTHO05D007465 1.1e-160 570.9 523 58.5
FAN03G2078 Fragaria x ananassa HOM05D006127 ORTHO05D007465 1.4e-160 570.5 477 62.1
FAN06G1782 Fragaria x ananassa HOM05D006127 ORTHO05D007465 1.9e-160 570.1 478 61.9
BcaB02g09667 Brassica carinata HOM05D006127 ORTHO05D007465 2.5e-160 569.7 516 58.1
FAN03G3352 Fragaria x ananassa HOM05D006127 ORTHO05D007465 2.5e-160 569.7 477 61.8
BcaC01g02503 Brassica carinata HOM05D006127 ORTHO05D007465 9.3e-160 567.8 515 57.5
FAN06G3350 Fragaria x ananassa HOM05D006127 ORTHO05D007465 1.6e-159 567.0 478 61.5
HanXRQChr00c0486g0575011 Helianthus annuus HOM05D006127 ORTHO05D007465 3.5e-159 565.8 556 54.9
Gohir.A09G182900 Gossypium hirsutum HOM05D006127 ORTHO05D007465 1.8e-158 563.5 535 56.3
ECA232G4568 Erigeron canadensis HOM05D006127 ORTHO05D007465 6.7e-158 561.6 471 60.3
HanXRQChr15g0494171 Helianthus annuus HOM05D006127 ORTHO05D007465 1.1e-157 560.8 534 57.5
Lsat_1_v5_gn_9_56840 Lactuca sativa HOM05D006127 ORTHO05D007465 7.4e-157 558.1 457 62.6
Lj1A1007G54 Lonicera japonica HOM05D006127 ORTHO05D007465 4.1e-155 552.4 471 61.6
Cc02_g02250 Coffea canephora HOM05D006127 ORTHO05D007465 4.5e-154 548.9 432 63.7
PSO478G4852 Papaver somniferum HOM05D006127 ORTHO05D007465 1.7e-153 547.0 528 54.4
Glyma.16G177100 Glycine max HOM05D006127 ORTHO05D007465 3.8e-153 545.8 533 55.2
Migut.F00277 Erythranthe guttata HOM05D006127 ORTHO05D007465 5.0e-153 545.4 576 53.0
PSO266G0017 Papaver somniferum HOM05D006127 ORTHO05D007465 5.0e-153 545.4 544 53.3
Sc13g0009280 Simmondsia chinensis HOM05D006127 ORTHO05D007465 6.5e-153 545.0 489 58.9
Nn6g32416 Nelumbo nucifera HOM05D006127 ORTHO05D007465 1.1e-149 534.3 526 55.1
DCAR_008898 Daucus carota HOM05D006127 ORTHO05D007465 4.3e-149 532.3 464 59.3
EL10Ac3g05405 Beta vulgaris HOM05D006127 ORTHO05D007465 8.2e-148 528.1 566 53.4
GSVIVG01028824001 Vitis vinifera HOM05D006127 ORTHO05D007465 9.1e-147 524.6 436 60.8
Cpa.g.sc107.127 Carica papaya HOM05D006127 ORTHO05D007465 2.6e-146 523.1 395 66.8
AUR62031438 Chenopodium quinoa HOM05D006127 ORTHO05D007465 7.7e-146 521.5 465 58.9
Aqoxy7G00200 Aquilegia oxysepala HOM05D006127 ORTHO05D007465 5.0e-145 518.8 462 58.4
unitig_747.g21859 Utricularia gibba HOM05D006127 ORTHO05D007465 6.1e-143 511.9 568 50.9
Ah.07g206460 Amaranthus hybridus HOM05D006127 ORTHO05D007465 1.5e-138 497.3 560 51.4
SGA_v2.0_scaffold60G21123 Striga asiatica HOM05D006127 ORTHO05D007465 2.0e-138 496.9 568 50.9
Oeu003330.1 Olea europaea HOM05D006127 ORTHO05D007465 3.4e-138 496.1 416 60.1
Rhsim03G0192200 Rhododendron simsii HOM05D006127 ORTHO05D007465 1.3e-137 494.2 567 50.6
Psat0s2186g0040 Pisum sativum HOM05D006127 ORTHO05D007465 3.8e-137 492.7 407 63.4
vmacro06616 Vaccinium macrocarpon HOM05D006127 ORTHO05D007465 1.0e-134 484.6 563 50.3
TPR.G9177 Trifolium pratense HOM05D006127 ORTHO05D007465 6.7e-134 481.9 286 79.4
ATR0721G168 Amborella trichopoda HOM05D006127 ORTHO05D007465 2.0e-133 480.3 474 54.9
CDE04G3725 Ceratophyllum demersum HOM05D006127 ORTHO05D007465 1.7e-132 477.2 511 51.3
Hund04798 Selenicereus undatus HOM05D006127 ORTHO05D007465 1.8e-131 473.8 681 43.3
FvH4_7g30450 Fragaria vesca HOM05D006127 ORTHO05D007465 4.1e-131 472.6 316 73.1
Zm00001eb119480 Zea mays HOM05D006127 ORTHO05D007465 1.3e-129 467.6 524 49.8
Ah.13g069260 Amaranthus hybridus HOM05D006127 ORTHO05D007465 4.7e-127 459.1 414 57.5
AUR62021102 Chenopodium quinoa HOM05D006127 ORTHO05D007465 2.4e-123 446.8 462 53.0
HPP92_008801 Vanilla planifolia HOM05D006127 ORTHO05D007465 2.7e-122 443.4 511 48.5
Oeu027861.1 Olea europaea HOM05D006127 ORTHO05D007465 2.5e-104 383.6 438 50.2
VMungo0464G0768 Vigna mungo HOM05D006127 ORTHO05D007465 1.4e-99 367.9 312 60.3
BcaB02g09671 Brassica carinata HOM05D006127 ORTHO05D007465 1.2e-98 364.8 461 47.9
Nn1g01683 Nelumbo nucifera HOM05D006127 ORTHO05D007465 1.4e-91 341.3 553 38.9
HPP92_005266 Vanilla planifolia HOM05D006127 ORTHO05D007465 4.6e-90 336.3 368 47.0
SGA_v2.0_scaffold192G40622 Striga asiatica HOM05D006127 ORTHO05D007465 8.3e-84 315.5 259 61.8
CDE03G0317 Ceratophyllum demersum HOM05D006127 ORTHO05D007465 1.1e-83 315.1 235 60.9
FAN01G1207 Fragaria x ananassa HOM05D006127 ORTHO05D007465 2.6e-69 267.3 193 66.3
Mapoly0009s0032 Marchantia polymorpha HOM05D006127 ORTHO05D007465 1.7e-68 264.6 392 40.8
AagrBONN_evm.TU.Sc2ySwM_368.2100 Anthoceros agrestis HOM05D006127 ORTHO05D007465 3.6e-63 246.9 456 34.2
Os01g0225300 Oryza sativa ssp. japonica HOM05D006127 ORTHO05D007465 6.4e-60 236.1 283 46.3
Pp3c17_22580 Physcomitrium patens HOM05D006127 ORTHO05D007465 3.5e-58 230.3 477 31.9
arahy.Tifrunner.gnm1.ann1.KML1I1 Arachis hypogaea HOM05D006127 ORTHO05D007465 2.5e-43 181.0 246 45.1
Cfa002216 Carpinus fangiana HOM05D006127 ORTHO05D007465 5.5e-35 153.3 239 41.8
SEGI_03634 Sequoiadendron giganteum HOM05D006127 ORTHO05D007465 3.6e-34 150.6 122 59.0
SMO266G0103 Selaginella moellendorffii HOM05D006127 ORTHO05D007465 3.0e-33 147.5 194 36.6
AL8G39600 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 2.8e-31 141.0 95 69.5
TPR.G9175 Trifolium pratense HOM05D006127 ORTHO05D007465 2.2e-23 114.8 80 68.8
COL.COLO4_36023 Corchorus olitorius HOM05D006127 ORTHO05D161883 1.1e-22 112.5 62 80.6
Ah.13g069250 Amaranthus hybridus HOM05D006127 ORTHO05D007465 4.7e-18 97.1 157 42.7
TPR.G27774 Trifolium pratense HOM05D006127 ORTHO05D007465 7.4e-16 89.7 168 33.9
SEGI_25179 Sequoiadendron giganteum HOM05D006127 ORTHO05D007465 9.7e-16 89.4 83 49.4


User provided reference genes

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