Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0007980 Sechium edule HOM05D004572 ORTHO05D005425 6.6e-57 223.8 111 100.0
MELO3C022741.2 Cucumis melo HOM05D004572 ORTHO05D005425 3.1e-30 135.2 132 56.8
ClCG07G002440 Citrullus lanatus HOM05D004572 ORTHO05D005425 5.3e-30 134.4 116 60.3
CsaV3_3G030260 Cucumis sativus L. HOM05D004572 ORTHO05D005425 5.8e-29 131.0 132 55.3
Sed0022149 Sechium edule HOM05D004572 ORTHO05D005425 2.1e-26 122.5 111 58.6
Dinv09440 Davidia involucrata HOM05D004572 ORTHO05D005425 2.1e-23 112.5 90 57.8
Hma1.2p1_0127F.1_g059630 Hydrangea macrophylla HOM05D004572 ORTHO05D005425 1.4e-22 109.8 92 58.7
TAR622G1008 Trochodendron aralioides HOM05D004924 ORTHO05D005896 1.4e-22 109.8 84 60.7
Sc07g0008270 Simmondsia chinensis HOM05D004572 ORTHO05D005425 4.0e-22 108.2 80 61.2
Manes.03G127100 Manihot esculenta HOM05D004572 ORTHO05D005425 9.0e-22 107.1 72 69.4
Manes.03G127200 Manihot esculenta HOM05D004572 ORTHO05D005425 9.0e-22 107.1 72 69.4
Potri.001G129700 Populus trichocarpa HOM05D004572 ORTHO05D005425 9.0e-22 107.1 125 47.2
Potri.003G104200 Populus trichocarpa HOM05D004572 ORTHO05D005425 9.0e-22 107.1 108 47.2
Sabra03G0071200 Salix brachista HOM05D004572 ORTHO05D005425 9.0e-22 107.1 125 43.2
Hund14323 Selenicereus undatus HOM05D004572 ORTHO05D005425 9.0e-22 107.1 83 60.2
Cpa.g.sc21.98 Carica papaya HOM05D004572 ORTHO05D005425 1.5e-21 106.3 83 56.6
AUR62019030 Chenopodium quinoa HOM05D004572 ORTHO05D005425 7.6e-21 104.0 120 49.2
Duzib177G0040 Durio zibethinus HOM05D004572 ORTHO05D005425 7.6e-21 104.0 78 61.5
Duzib268G1853 Durio zibethinus HOM05D004572 ORTHO05D005425 7.6e-21 104.0 76 63.2
Sabra01G0100000 Salix brachista HOM05D004572 ORTHO05D005425 7.6e-21 104.0 74 63.5
Thecc.04G269400 Theobroma cacao HOM05D004572 ORTHO05D005425 7.6e-21 104.0 74 64.9
Gohir.D05G255680 Gossypium hirsutum HOM05D004572 ORTHO05D005425 1.0e-20 103.6 78 61.5
Gorai.009G267300 Gossypium raimondii HOM05D004572 ORTHO05D005425 1.0e-20 103.6 78 61.5
Nn5g27612 Nelumbo nucifera HOM05D004572 ORTHO05D005425 1.0e-20 103.6 82 56.1
TAR629G0838 Trochodendron aralioides HOM05D004572 ORTHO05D005425 1.7e-20 102.8 91 52.7
vmacro05137 Vaccinium macrocarpon HOM05D004572 ORTHO05D005425 1.7e-20 102.8 127 44.1
VMungo0720G3103 Vigna mungo HOM05D004572 ORTHO05D005425 1.7e-20 102.8 81 59.3
Gohir.A05G253900 Gossypium hirsutum HOM05D004572 ORTHO05D005425 2.2e-20 102.4 74 63.5
Medtr1g038340 Medicago truncatula HOM05D004572 ORTHO05D005425 2.9e-20 102.1 101 50.5
CANSAT56G0747 Cannabis sativa HOM05D004572 ORTHO05D005425 4.9e-20 101.3 91 56.0
CANSAT56G1258 Cannabis sativa HOM05D004572 ORTHO05D005425 8.4e-20 100.5 96 54.2
Lj2g0021533 Lotus japonicus HOM05D004572 ORTHO05D005425 8.4e-20 100.5 75 58.7
Phvul.003G026500 Phaseolus vulgaris HOM05D004572 ORTHO05D005425 1.1e-19 100.1 80 60.0
Phvul.003G004000 Phaseolus vulgaris HOM05D004572 ORTHO05D005425 1.4e-19 99.8 80 60.0
DCAR_023418 Daucus carota HOM05D004572 ORTHO05D005425 1.9e-19 99.4 87 50.6
HanXRQChr04g0098951 Helianthus annuus HOM05D004572 ORTHO05D005425 1.9e-19 99.4 102 52.9
Lalb_Chr20g0109201 Lupinus albus HOM05D004572 ORTHO05D005425 1.9e-19 99.4 86 57.0
arahy.Tifrunner.gnm1.ann1.41JFP3 Arachis hypogaea HOM05D004572 ORTHO05D005425 2.5e-19 99.0 93 52.7
arahy.Tifrunner.gnm1.ann1.GWI8GZ Arachis hypogaea HOM05D004572 ORTHO05D005425 2.5e-19 99.0 90 54.4
AUR62008525 Chenopodium quinoa HOM05D004572 ORTHO05D005425 2.5e-19 99.0 79 59.5
arahy.Tifrunner.gnm1.ann1.Z20ZUZ Arachis hypogaea HOM05D004572 ORTHO05D005425 3.2e-19 98.6 93 52.7
TWI32G1304 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 4.2e-19 98.2 84 54.8
DCAR_017646 Daucus carota HOM05D004572 ORTHO05D005425 7.1e-19 97.4 87 49.4
Rhsim01G0089200 Rhododendron simsii HOM05D004572 ORTHO05D005425 7.1e-19 97.4 129 44.2
CiPaw.11G104400 Carya illinoinensis HOM05D004572 ORTHO05D005425 9.3e-19 97.1 78 57.7
Psat6g099680 Pisum sativum HOM05D004572 ORTHO05D005425 9.3e-19 97.1 83 54.2
Aqoxy7G00153 Aquilegia oxysepala HOM05D004572 ORTHO05D005425 1.2e-18 96.7 77 53.2
Glyma.07G197900 Glycine max HOM05D004572 ORTHO05D005425 1.2e-18 96.7 80 57.5
Glyma.20G002200 Glycine max HOM05D004572 ORTHO05D005425 1.2e-18 96.7 80 57.5
QL12p001966 Quercus lobata HOM05D004572 ORTHO05D005425 1.2e-18 96.7 76 59.2
QL93p0146_0040 Quercus lobata HOM05D004572 ORTHO05D005425 1.2e-18 96.7 82 58.5
Ca_12422_v3 Cicer arietinum L. HOM05D004572 ORTHO05D005425 1.6e-18 96.3 83 55.4
Ca_12425_v3 Cicer arietinum L. HOM05D004572 ORTHO05D005425 1.6e-18 96.3 83 55.4
QL06p018920 Quercus lobata HOM05D004572 ORTHO05D005425 1.6e-18 96.3 76 59.2
CSS0029181 Camellia sinensis var. sinensis HOM05D004572 ORTHO05D005425 2.1e-18 95.9 76 55.3
CSS0036523 Camellia sinensis var. sinensis HOM05D004572 ORTHO05D005425 2.1e-18 95.9 76 55.3
Cc04_g13510 Coffea canephora HOM05D004572 ORTHO05D005425 2.1e-18 95.9 105 49.5
Haze_21257 Corylus avellana HOM05D004572 ORTHO05D005425 2.7e-18 95.5 79 58.2
TWI34G1093 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 2.7e-18 95.5 86 51.2
Cfa012912 Carpinus fangiana HOM05D004572 ORTHO05D005425 3.5e-18 95.1 79 57.0
MBI12_g26901_MAGBIO Magnolia biondii HOM05D004572 ORTHO05D005425 6.0e-18 94.4 116 42.2
Aqoxy5G04375 Aquilegia oxysepala HOM05D004572 ORTHO05D005425 7.9e-18 94.0 83 54.2
AL1G47900 Arabidopsis lyrata HOM05D004572 ORTHO05D005425 7.9e-18 94.0 84 57.1
Lj8P410T5 Lonicera japonica HOM05D004572 ORTHO05D005425 7.9e-18 94.0 69 63.8
Aa31LG6G7980 Aethionema arabicum HOM05D004572 ORTHO05D005425 1.0e-17 93.6 103 49.5
Cfa012902 Carpinus fangiana HOM05D004572 ORTHO05D005425 1.0e-17 93.6 79 57.0
Cc04_g13460 Coffea canephora HOM05D004572 ORTHO05D005425 1.0e-17 93.6 81 56.8
COL.COLO4_28616 Corchorus olitorius HOM05D004572 ORTHO05D005425 1.0e-17 93.6 74 54.1
MSTRG.11833 Avicennia marina HOM05D004572 ORTHO05D005425 1.3e-17 93.2 87 54.0
Carub.0001s3171 Capsella rubella HOM05D004572 ORTHO05D005425 3.0e-17 92.0 75 57.3
MD11G1222200 Malus domestica HOM05D004572 ORTHO05D005425 3.0e-17 92.0 92 46.7
CARHR032960 Cardamine hirsuta HOM05D004572 ORTHO05D005425 3.9e-17 91.7 81 58.0
PSO675G6986 Papaver somniferum HOM05D004572 ORTHO05D005425 3.9e-17 91.7 79 51.9
VMungo0251G2350 Vigna mungo HOM05D004572 ORTHO05D005425 3.9e-17 91.7 80 53.8
Ah.08g210120 Amaranthus hybridus HOM05D004572 ORTHO05D005425 5.1e-17 91.3 74 56.8
HanXRQChr03g0083281 Helianthus annuus HOM05D004572 ORTHO05D005425 5.1e-17 91.3 81 54.3
Migut.A00508 Erythranthe guttata HOM05D004572 ORTHO05D005425 6.7e-17 90.9 93 44.1
PSO541G6108 Papaver somniferum HOM05D004572 ORTHO05D005425 6.7e-17 90.9 79 50.6
THA.LOC104815806 Tarenaya hassleriana HOM05D004572 ORTHO05D005425 6.7e-17 90.9 80 51.2
AT1G33520 Arabidopsis thaliana HOM05D004572 ORTHO05D005425 8.7e-17 90.5 84 54.8
Cfa021184 Carpinus fangiana HOM05D004572 ORTHO05D005425 8.7e-17 90.5 74 59.5
FvH4_3g22160 Fragaria vesca HOM05D004572 ORTHO05D005425 8.7e-17 90.5 90 52.2
FAN11G3304 Fragaria x ananassa HOM05D004572 ORTHO05D005425 8.7e-17 90.5 90 52.2
Solyc08g074570.1 Solanum lycopersicum HOM05D004572 ORTHO05D005425 8.7e-17 90.5 73 56.2
Sopen08g023180 Solanum pennellii HOM05D004572 ORTHO05D005425 8.7e-17 90.5 73 56.2
PGSC0003DMG400029573 Solanum tuberosum HOM05D004572 ORTHO05D005425 8.7e-17 90.5 73 56.2
Thhalv10007601m.g Eutrema salsugineum HOM05D004572 ORTHO05D005425 1.1e-16 90.1 99 48.5
Sp1g28990 Schrenkiella parvula HOM05D004572 ORTHO05D005425 1.1e-16 90.1 86 52.3
BcaC05g27801 Brassica carinata HOM05D004572 ORTHO05D005425 1.5e-16 89.7 75 56.0
C05p37990 Brassica napus HOM05D004572 ORTHO05D005425 1.5e-16 89.7 75 56.0
BolC5t32530H Brassica oleracea HOM05D004572 ORTHO05D005425 1.5e-16 89.7 75 56.0
CAN.G195.29 Capsicum annuum HOM05D004572 ORTHO05D005425 1.9e-16 89.4 73 54.8
FAN16G2201 Fragaria x ananassa HOM05D004572 ORTHO05D005425 1.9e-16 89.4 90 51.1
FAN21G2024 Fragaria x ananassa HOM05D004572 ORTHO05D005425 1.9e-16 89.4 90 51.1
Glyma.09G283500 Glycine max HOM05D004572 ORTHO05D005425 1.9e-16 89.4 79 53.2
ECA248G3611 Erigeron canadensis HOM05D004572 ORTHO05D005425 2.5e-16 89.0 74 54.1
MD03G1208000 Malus domestica HOM05D004572 ORTHO05D005425 2.5e-16 89.0 87 49.4
RcHm_v2.0_Chr5g0038051 Rosa chinensis HOM05D004572 ORTHO05D005425 2.5e-16 89.0 87 51.7
BcaB03g13695 Brassica carinata HOM05D004572 ORTHO05D005425 3.3e-16 88.6 87 49.4
BraA05t21310Z Brassica rapa HOM05D004572 ORTHO05D005425 3.3e-16 88.6 89 49.4
RcHm_v2.0_Chr5g0037991 Rosa chinensis HOM05D004572 ORTHO05D005425 5.7e-16 87.8 84 51.2
Lsat_1_v5_gn_6_80001 Lactuca sativa HOM05D004572 ORTHO05D005425 7.4e-16 87.4 84 51.2
Nitab4.5_0000907g0020 Nicotiana tabacum HOM05D004572 ORTHO05D005425 7.4e-16 87.4 73 52.1
Nitab4.5_0001131g0030 Nicotiana tabacum HOM05D004572 ORTHO05D005425 7.4e-16 87.4 73 52.1
SGA_v2.0_scaffold27G11714 Striga asiatica HOM05D004572 ORTHO05D005425 7.4e-16 87.4 72 54.2
ECA233G3653 Erigeron canadensis HOM05D004572 ORTHO05D005425 1.3e-15 86.7 74 52.7
Oeu028098.1 Olea europaea HOM05D004572 ORTHO05D005425 2.8e-15 85.5 77 51.9
PSO170G2332 Papaver somniferum HOM05D004572 ORTHO05D005425 3.7e-15 85.1 77 48.1
Prupe.4G208800 Prunus persica HOM05D004572 ORTHO05D005425 8.2e-15 84.0 101 43.6
FAN16G0157 Fragaria x ananassa HOM05D004572 ORTHO05D005425 1.1e-14 83.6 68 57.4
PGR042G2393 Punica granatum HOM05D004572 ORTHO05D005425 1.1e-14 83.6 101 43.6
Os03g0253500 Oryza sativa ssp. japonica HOM05D004572 ORTHO05D005425 3.1e-14 82.0 70 52.9
CDE11G0183 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 4.1e-14 81.6 77 44.2
SalBow4G0115 Salvia bowleyana HOM05D004572 ORTHO05D005425 4.1e-14 81.6 68 54.4
unitig_748.g8160 Utricularia gibba HOM05D004572 ORTHO05D005425 5.3e-14 81.3 75 48.0
Peaxi162Scf00445g00102 Petunia axillaris HOM05D004572 ORTHO05D005425 6.9e-14 80.9 68 50.0
TWI74G0109 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 1.2e-13 80.1 74 48.6
Zm00001eb398470 Zea mays HOM05D004572 ORTHO05D005425 2.0e-13 79.3 71 52.1
Prupe.4G208700 Prunus persica HOM05D004572 ORTHO05D005425 3.4e-13 78.6 93 45.2
Aa31LG9G8960 Aethionema arabicum HOM05D000113 ORTHO05D002571 1.3e-12 76.6 79 45.6
AL7G28150 Arabidopsis lyrata HOM05D004572 ORTHO05D005425 2.9e-12 75.5 84 44.0
AT4G25020 Arabidopsis thaliana HOM05D004572 ORTHO05D005425 5.0e-12 74.7 85 42.4
Carub.0007s1601 Capsella rubella HOM05D004572 ORTHO05D005425 8.5e-12 73.9 75 45.3
Thhalv10027298m.g Eutrema salsugineum HOM05D004572 ORTHO05D005425 5.5e-11 71.2 83 43.4
SalBow7G4536 Salvia bowleyana HOM05D000482 ORTHO05D000349 5.5e-11 71.2 68 50.0
ATR0579G060 Amborella trichopoda HOM05D004572 ORTHO05D005425 1.6e-10 69.7 58 50.0
Atru.chr6.2109 Acer truncatum HOM05D004572 ORTHO05D005425 2.7e-10 68.9 57 54.4
CARHR232410 Cardamine hirsuta HOM05D004572 ORTHO05D005425 4.6e-10 68.2 77 42.9
Pp3c1_630 Physcomitrium patens HOM05D004572 ORTHO05D005425 4.6e-10 68.2 76 46.1
Mapoly0027s0115 Marchantia polymorpha HOM05D004572 ORTHO05D005425 1.4e-09 66.6 75 40.0
TPR.G29795 Trifolium pratense HOM05D004572 ORTHO05D005425 1.8e-09 66.2 54 51.9
Ciclev10001464m.g Citrus clementina HOM05D004572 ORTHO05D005425 3.0e-09 65.5 67 38.8
SMO347G0031 Selaginella moellendorffii HOM05D004572 ORTHO05D005425 3.0e-09 65.5 91 40.7
AagrBONN_evm.TU.Sc2ySwM_344.5065 Anthoceros agrestis HOM05D004572 ORTHO05D005425 1.5e-08 63.2 66 43.9
Eucgr.E01208 Eucalyptus grandis HOM05D004572 ORTHO05D005425 3.3e-08 62.0 68 44.1
SHI08932 Sapria himalayana HOM05D004572 ORTHO05D005425 3.3e-08 62.0 74 44.6
MCO10G255 Micromonas commoda HOM05D004572 ORTHO05D005425 5.7e-08 61.2 67 40.3
AagrBONN_evm.TU.Sc2ySwM_344.715 Anthoceros agrestis HOM05D004572 ORTHO05D005425 2.2e-07 59.3 66 43.9
Oeu048006.1 Olea europaea HOM05D004572 ORTHO05D005425 3.7e-07 58.5 93 37.6
HPP92_014435 Vanilla planifolia HOM05D004572 ORTHO05D005425 1.4e-06 56.6 47 46.8
Cre06.g303500 Chlamydomonas reinhardtii HOM05D004572 ORTHO05D005425 1.8e-06 56.2 63 42.9
CBR_g54973 Chara braunii HOM05D004572 ORTHO05D005425 6.9e-06 54.3 66 36.4
CBR_g50444 Chara braunii HOM05D004572 ORTHO05D005425 9.1e-06 53.9 66 36.4
PRCOL_00000575 Prasinoderma coloniale HOM05D004572 ORTHO05D005425 9.1e-06 53.9 61 41.0


User provided reference genes

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