Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0007947 Sechium edule HOM05D005163 ORTHO05D006462 0.0e+00 1413.7 696 100.0
Sed0022975 Sechium edule HOM05D005163 ORTHO05D006462 0.0e+00 1339.7 696 93.5
MELO3C007876.2 Cucumis melo HOM05D005163 ORTHO05D006462 0.0e+00 1338.2 696 94.3
ClCG01G020030 Citrullus lanatus HOM05D005163 ORTHO05D006462 0.0e+00 1337.4 700 93.7
CsaV3_6G046790 Cucumis sativus L. HOM05D005163 ORTHO05D006462 0.0e+00 1327.8 696 93.0
Cfa006924 Carpinus fangiana HOM05D005163 ORTHO05D006462 0.0e+00 1228.8 694 85.0
Manes.02G100000 Manihot esculenta HOM05D005163 ORTHO05D006462 0.0e+00 1225.7 694 84.4
QL06p034609 Quercus lobata HOM05D005163 ORTHO05D006462 0.0e+00 1221.5 694 84.3
Ciclev10025040m.g Citrus clementina HOM05D005163 ORTHO05D006462 0.0e+00 1208.4 694 83.4
Thecc.01G025400 Theobroma cacao HOM05D005163 ORTHO05D006462 0.0e+00 1208.4 694 82.7
GSVIVG01018847001 Vitis vinifera HOM05D005163 ORTHO05D006462 0.0e+00 1207.6 694 83.4
Atru.chr3.745 Acer truncatum HOM05D005163 ORTHO05D006462 0.0e+00 1207.2 693 82.7
RcHm_v2.0_Chr2g0100261 Rosa chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1205.7 693 83.5
Gohir.A12G062100 Gossypium hirsutum HOM05D005163 ORTHO05D006462 0.0e+00 1203.7 694 82.7
Potri.005G118300 Populus trichocarpa HOM05D005163 ORTHO05D006462 0.0e+00 1203.7 697 83.4
Potri.007G017600 Populus trichocarpa HOM05D005163 ORTHO05D006462 0.0e+00 1201.0 695 82.7
Gorai.008G065200 Gossypium raimondii HOM05D005163 ORTHO05D006462 0.0e+00 1196.4 694 82.1
Haze_03825 Corylus avellana HOM05D005163 ORTHO05D006462 0.0e+00 1194.1 673 84.7
Peaxi162Scf00084g01221 Petunia axillaris HOM05D005163 ORTHO05D006462 0.0e+00 1194.1 696 82.2
arahy.Tifrunner.gnm1.ann1.U2HICA Arachis hypogaea HOM05D005163 ORTHO05D006462 0.0e+00 1190.6 694 82.4
MD02G1137100 Malus domestica HOM05D005163 ORTHO05D006462 0.0e+00 1190.6 697 82.2
arahy.Tifrunner.gnm1.ann1.U51VHD Arachis hypogaea HOM05D005163 ORTHO05D006462 0.0e+00 1190.3 694 82.3
Cc07_g10240 Coffea canephora HOM05D005163 ORTHO05D006462 0.0e+00 1190.3 694 81.7
Nitab4.5_0000723g0040 Nicotiana tabacum HOM05D005163 ORTHO05D006462 0.0e+00 1188.7 691 81.8
Ca_24882_v3 Cicer arietinum L. HOM05D005163 ORTHO05D006462 0.0e+00 1188.3 694 82.6
Sabra07G0015000 Salix brachista HOM05D005163 ORTHO05D006462 0.0e+00 1187.9 693 81.5
FvH4_1g12400 Fragaria vesca HOM05D005163 ORTHO05D006462 0.0e+00 1185.2 693 82.1
Glyma.01G170600 Glycine max HOM05D005163 ORTHO05D006462 0.0e+00 1184.1 695 82.4
Phvul.002G166800 Phaseolus vulgaris HOM05D005163 ORTHO05D006462 0.0e+00 1183.7 694 82.4
Eucgr.J02388 Eucalyptus grandis HOM05D005163 ORTHO05D006462 0.0e+00 1182.5 694 80.4
VMungo1215G3295 Vigna mungo HOM05D005163 ORTHO05D006462 0.0e+00 1182.5 694 82.1
Nitab4.5_0007070g0020 Nicotiana tabacum HOM05D005163 ORTHO05D006462 0.0e+00 1182.2 694 81.6
Lj4C212G4 Lonicera japonica HOM05D005163 ORTHO05D006462 0.0e+00 1181.0 694 81.7
Lj2g0010053 Lotus japonicus HOM05D005163 ORTHO05D006462 0.0e+00 1180.6 695 82.0
TAR376G0780 Trochodendron aralioides HOM05D005163 ORTHO05D006462 0.0e+00 1180.6 695 80.3
Medtr5g021150 Medicago truncatula HOM05D005163 ORTHO05D006462 0.0e+00 1180.2 695 82.6
PGR102G2820 Punica granatum HOM05D005163 ORTHO05D006462 0.0e+00 1180.2 694 80.5
Psat2g156920 Pisum sativum HOM05D005163 ORTHO05D006462 0.0e+00 1179.9 694 82.3
TPR.G2381 Trifolium pratense HOM05D005163 ORTHO05D006462 0.0e+00 1179.9 694 82.4
TWI73G0422 Tripterygium wilfordii HOM05D005163 ORTHO05D006462 0.0e+00 1179.1 691 81.3
MD15G1250800 Malus domestica HOM05D005163 ORTHO05D006462 0.0e+00 1178.7 697 81.6
Hma1.2p1_0913F.1_g236050 Hydrangea macrophylla HOM05D005163 ORTHO05D006462 0.0e+00 1177.9 696 81.0
Aqoxy5G01510 Aquilegia oxysepala HOM05D005163 ORTHO05D006462 0.0e+00 1174.1 694 79.7
Glyma.11G072700 Glycine max HOM05D005163 ORTHO05D006462 0.0e+00 1174.1 694 81.8
Sc03g0003300 Simmondsia chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1172.1 693 81.0
CANSAT01G3091 Cannabis sativa HOM05D005163 ORTHO05D006462 0.0e+00 1171.8 694 82.1
PGSC0003DMG400003539 Solanum tuberosum HOM05D005163 ORTHO05D006462 0.0e+00 1169.1 696 80.7
CAN.G358.18 Capsicum annuum HOM05D005163 ORTHO05D006462 0.0e+00 1167.9 696 80.2
Sopen02g029360 Solanum pennellii HOM05D005163 ORTHO05D006462 0.0e+00 1167.1 696 80.7
Solyc02g084690.3 Solanum lycopersicum HOM05D005163 ORTHO05D006462 0.0e+00 1165.6 696 80.6
Ah.02g124830 Amaranthus hybridus HOM05D005163 ORTHO05D006462 0.0e+00 1162.1 693 80.5
HanXRQChr14g0441521 Helianthus annuus HOM05D005163 ORTHO05D006462 0.0e+00 1162.1 694 80.0
Lalb_Chr16g0377681 Lupinus albus HOM05D005163 ORTHO05D006462 0.0e+00 1160.6 694 80.3
Migut.H02494 Erythranthe guttata HOM05D005163 ORTHO05D006462 0.0e+00 1159.8 696 79.6
PSO541G1023 Papaver somniferum HOM05D005163 ORTHO05D006462 0.0e+00 1159.4 695 79.9
Lalb_Chr05g0212611 Lupinus albus HOM05D005163 ORTHO05D006462 0.0e+00 1158.3 694 80.4
Aa31LG4G19160 Aethionema arabicum HOM05D005163 ORTHO05D006462 0.0e+00 1152.9 696 79.2
Hund16465 Selenicereus undatus HOM05D005163 ORTHO05D006462 0.0e+00 1152.5 697 78.8
CARHR160630 Cardamine hirsuta HOM05D005163 ORTHO05D006462 0.0e+00 1151.7 695 78.1
Thhalv10010167m.g Eutrema salsugineum HOM05D005163 ORTHO05D006462 0.0e+00 1150.2 695 78.4
Rhsim08G0123900 Rhododendron simsii HOM05D005163 ORTHO05D006462 0.0e+00 1150.2 719 77.9
Prupe.7G163500 Prunus persica HOM05D005163 ORTHO05D006462 0.0e+00 1149.4 697 80.6
HanXRQChr07g0191281 Helianthus annuus HOM05D005163 ORTHO05D006462 0.0e+00 1148.7 696 78.7
PSO675G4614 Papaver somniferum HOM05D005163 ORTHO05D006462 0.0e+00 1147.5 694 79.1
SalBow8G4654 Salvia bowleyana HOM05D005163 ORTHO05D006462 0.0e+00 1147.5 696 78.7
THA.LOC104826639 Tarenaya hassleriana HOM05D005163 ORTHO05D006462 0.0e+00 1144.8 696 78.7
Sp5g11160 Schrenkiella parvula HOM05D005163 ORTHO05D006462 0.0e+00 1144.0 696 77.7
Gohir.A11G178900 Gossypium hirsutum HOM05D005163 ORTHO05D006462 0.0e+00 1139.0 694 77.8
Carub.0005s1745 Capsella rubella HOM05D005163 ORTHO05D006462 0.0e+00 1138.3 695 77.3
Gorai.007G198300 Gossypium raimondii HOM05D005163 ORTHO05D006462 0.0e+00 1138.3 694 77.8
Actinidia19230 Actinidia chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1137.9 694 79.3
MSTRG.23270 Avicennia marina HOM05D005163 ORTHO05D006462 0.0e+00 1137.9 695 78.6
C07p46120 Brassica napus HOM05D005163 ORTHO05D006462 0.0e+00 1135.6 695 77.0
Oeu024029.1 Olea europaea HOM05D005163 ORTHO05D006462 0.0e+00 1131.7 694 79.1
Lsat_1_v5_gn_2_78240 Lactuca sativa HOM05D005163 ORTHO05D006462 0.0e+00 1130.5 696 77.7
FAN28G1722 Fragaria x ananassa HOM05D005163 ORTHO05D006462 0.0e+00 1130.2 693 79.2
AL5G31470 Arabidopsis lyrata HOM05D005163 ORTHO05D006462 0.0e+00 1129.0 697 77.0
AT3G51050 Arabidopsis thaliana HOM05D005163 ORTHO05D006462 0.0e+00 1126.3 697 76.8
EL10As8g23870 Beta vulgaris HOM05D005163 ORTHO05D006462 0.0e+00 1122.5 692 78.9
BolC7t45128H Brassica oleracea HOM05D005163 ORTHO05D006462 0.0e+00 1119.8 693 76.3
AUR62007635 Chenopodium quinoa HOM05D005163 ORTHO05D006462 0.0e+00 1114.4 718 76.3
Oeu005146.2 Olea europaea HOM05D005163 ORTHO05D006462 0.0e+00 1108.2 747 73.0
A03p48100 Brassica napus HOM05D005163 ORTHO05D006462 0.0e+00 1099.3 719 73.4
Nn5g29168 Nelumbo nucifera HOM05D005163 ORTHO05D006462 0.0e+00 1098.2 694 76.8
SGA_v2.0_scaffold280G46851 Striga asiatica HOM05D005163 ORTHO05D006462 0.0e+00 1096.6 719 75.0
FAN23G1678 Fragaria x ananassa HOM05D005163 ORTHO05D006462 0.0e+00 1095.1 681 78.0
FAN19G3097 Fragaria x ananassa HOM05D005163 ORTHO05D006462 0.0e+00 1094.0 681 77.8
Duzib147G0248 Durio zibethinus HOM05D005163 ORTHO05D006462 0.0e+00 1092.8 694 76.4
Actinidia26108 Actinidia chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1092.4 694 77.1
AUR62004121 Chenopodium quinoa HOM05D005163 ORTHO05D006462 0.0e+00 1092.4 740 74.2
ATR0661G156 Amborella trichopoda HOM05D005163 ORTHO05D006462 0.0e+00 1089.7 694 75.8
ECA238G0541 Erigeron canadensis HOM05D005163 ORTHO05D006462 0.0e+00 1084.7 646 79.4
CSS0019296 Camellia sinensis var. sinensis HOM05D005163 ORTHO05D006462 2.3e-309 1065.1 611 83.0
Duzib187G1632 Durio zibethinus HOM05D005163 ORTHO05D006462 3.4e-308 1061.2 695 75.1
HPP92_021000 Vanilla planifolia HOM05D005163 ORTHO05D006462 4.4e-308 1060.8 694 73.9
DCAR_031672 Daucus carota HOM05D005163 ORTHO05D006462 3.2e-306 1054.7 694 75.5
Cpa.g.sc6.195 Carica papaya HOM05D005163 ORTHO05D006462 1.7e-304 1048.9 694 75.1
CDE04G3147 Ceratophyllum demersum HOM05D005163 ORTHO05D006462 2.3e-304 1048.5 676 74.0
BcaC06g33060 Brassica carinata HOM05D005163 ORTHO05D006462 1.9e-295 1018.8 695 71.4
Os02g0100700 Oryza sativa ssp. japonica HOM05D005163 ORTHO05D006462 2.5e-295 1018.5 701 71.6
Gohir.D12G062000 Gossypium hirsutum HOM05D005163 ORTHO05D006462 1.3e-288 996.1 581 81.4
Zm00001eb228990 Zea mays HOM05D005163 ORTHO05D006462 1.3e-288 996.1 703 69.7
COL.COLO4_21984 Corchorus olitorius HOM05D005163 ORTHO05D006462 8.4e-275 950.3 637 73.3
CiPaw.07G054500 Carya illinoinensis HOM05D005163 ORTHO05D006462 5.3e-269 931.0 540 82.6
Sabra05G0097300 Salix brachista HOM05D005163 ORTHO05D006462 5.1e-264 914.4 707 67.0
Gohir.D11G186500 Gossypium hirsutum HOM05D005163 ORTHO05D006462 1.9e-258 896.0 581 74.2
Mapoly0159s0016 Marchantia polymorpha HOM05D005163 ORTHO05D006462 8.2e-246 854.0 699 60.5
Dinv40040 Davidia involucrata HOM05D005163 ORTHO05D006462 1.2e-236 823.5 539 73.8
SMO340G0175 Selaginella moellendorffii HOM05D005163 ORTHO05D006462 2.0e-228 796.2 698 56.7
Pp3c2_37540 Physcomitrium patens HOM05D005163 ORTHO05D006462 7.2e-226 787.7 708 57.1
Pp3c2_36750 Physcomitrium patens HOM05D005163 ORTHO05D006462 2.7e-225 785.8 707 56.7
Pp3c2_36751 Physcomitrium patens HOM05D005163 ORTHO05D006462 2.7e-225 785.8 707 56.7
Pp3c11_13530 Physcomitrium patens HOM05D005163 ORTHO05D006462 6.3e-222 774.6 707 55.6
AagrBONN_evm.TU.Sc2ySwM_368.2341 Anthoceros agrestis HOM05D005163 ORTHO05D006462 9.7e-215 750.7 711 54.7
vmacro17732 Vaccinium macrocarpon HOM05D005163 ORTHO05D006462 7.0e-213 744.6 470 77.7
FAN26G0993 Fragaria x ananassa HOM05D005163 ORTHO05D006462 1.1e-184 651.0 386 80.3
CBR_g41477 Chara braunii HOM05D005163 ORTHO05D006462 2.9e-158 563.1 721 44.7
unitig_699.g19557 Utricularia gibba HOM05D005163 ORTHO05D006462 6.9e-152 542.0 375 69.9
C08p26360 Brassica napus HOM05D005163 ORTHO05D006462 9.0e-136 488.4 504 54.0
Dinv33585 Davidia involucrata HOM05D005163 ORTHO05D006462 5.0e-110 402.9 248 78.2
MCO09G435 Micromonas commoda HOM05D005163 ORTHO05D006462 1.6e-103 381.3 766 34.7
MBI01_g27921_MAGBIO Magnolia biondii HOM05D005163 ORTHO05D006462 1.9e-101 374.4 344 57.3
Cre07.g336050 Chlamydomonas reinhardtii HOM05D005163 ORTHO05D006462 1.2e-100 371.7 819 33.2
SEGI_18766 Sequoiadendron giganteum HOM05D005163 ORTHO05D006462 3.5e-95 353.6 268 64.6
BcaC07g39583 Brassica carinata HOM05D005163 ORTHO05D006462 8.0e-76 289.3 247 60.7
unitig_699.g19558 Utricularia gibba HOM05D005163 ORTHO05D006462 2.3e-70 271.2 179 73.2
Hma1.2p1_0913F.1_g236060 Hydrangea macrophylla HOM05D005163 ORTHO05D006462 1.5e-69 268.5 250 58.8
SHI08600 Sapria himalayana HOM05D005163 ORTHO05D006462 9.5e-69 265.8 165 75.2
Dinv33586 Davidia involucrata HOM05D005163 ORTHO05D006462 6.8e-67 259.6 184 71.7
PRCOL_00007058 Prasinoderma coloniale HOM05D005163 ORTHO05D006462 4.3e-61 240.4 610 30.5
A09p44140 Brassica napus HOM05D005163 ORTHO05D006462 5.2e-59 233.4 235 54.0
SEGI_33135 Sequoiadendron giganteum HOM05D005163 ORTHO05D006462 4.9e-49 200.3 128 72.7
BcaB05g23544 Brassica carinata HOM05D005163 ORTHO05D006462 1.9e-45 188.3 138 71.0
Dinv33584 Davidia involucrata HOM05D005163 ORTHO05D006462 4.9e-41 173.7 96 84.4
BraA09t39874Z Brassica rapa HOM05D005163 ORTHO05D006462 2.1e-36 158.3 93 79.6
Sabra07G0015100 Salix brachista HOM05D005163 ORTHO05D006462 1.2e-31 142.5 75 88.0
CDE12G0395 Ceratophyllum demersum HOM05D005163 ORTHO05D006462 4.6e-31 140.6 231 40.3
vmacro17731 Vaccinium macrocarpon HOM05D005163 ORTHO05D006462 1.3e-30 139.0 73 87.7
Hund14017 Selenicereus undatus HOM05D005163 ORTHO05D006462 9.0e-27 126.3 84 69.0
SHI08598 Sapria himalayana HOM05D005163 ORTHO05D006462 1.7e-17 95.5 86 57.0
TAR625G0301 Trochodendron aralioides HOM05D005163 ORTHO05D006462 6.5e-17 93.6 90 55.6
BolC8t50252H Brassica oleracea HOM05D005163 ORTHO05D041294 9.7e-13 79.7 48 79.2
C08p26350 Brassica napus HOM05D005163 ORTHO05D041294 8.2e-12 76.6 48 72.9
MBI01_g27920_MAGBIO Magnolia biondii HOM05D005163 ORTHO05D000004 3.0e-06 58.2 33 75.8


User provided reference genes

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