Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0007946 Sechium edule HOM05D005777 ORTHO05D006854 1.6e-305 1052.0 529 100.0
CsaV3_5G001940 Cucumis sativus L. HOM05D005777 ORTHO05D006854 4.1e-205 718.4 547 71.1
MELO3C033830.2 Cucumis melo HOM05D005777 ORTHO05D006854 7.7e-196 687.6 500 72.6
Cfa011969 Carpinus fangiana HOM05D005777 ORTHO05D006854 2.7e-100 370.2 682 39.4
Prupe.5G124500 Prunus persica HOM05D005777 ORTHO05D006854 1.1e-98 364.8 665 38.0
Atru.chr9.1942 Acer truncatum HOM05D005777 ORTHO05D006854 1.7e-97 360.9 599 39.1
CSS0003604 Camellia sinensis var. sinensis HOM05D005777 ORTHO05D006854 1.4e-96 357.8 377 50.1
Potri.007G058050 Populus trichocarpa HOM05D005777 ORTHO05D006854 4.5e-95 352.8 568 42.1
MD06G1111700 Malus domestica HOM05D005777 ORTHO05D006854 5.9e-95 352.4 555 42.0
Haze_09107 Corylus avellana HOM05D005777 ORTHO05D006854 6.5e-94 349.0 675 38.5
QL02p029612 Quercus lobata HOM05D005777 ORTHO05D006854 1.4e-91 341.3 564 41.0
TWI60G0567 Tripterygium wilfordii HOM05D005777 ORTHO05D006854 1.3e-89 334.7 463 43.0
Peaxi162Scf00074g00526 Petunia axillaris HOM05D005777 ORTHO05D006854 1.8e-88 330.9 354 50.8
TAR629G1222 Trochodendron aralioides HOM05D005777 ORTHO05D006854 1.3e-86 324.7 408 46.3
Rhsim07G0080700 Rhododendron simsii HOM05D005777 ORTHO05D006854 2.2e-86 323.9 380 46.8
Nitab4.5_0002793g0030 Nicotiana tabacum HOM05D005777 ORTHO05D006854 9.4e-85 318.5 368 46.5
Nitab4.5_0002367g0090 Nicotiana tabacum HOM05D005777 ORTHO05D006854 4.7e-84 316.2 358 47.5
CAN.G567.32 Capsicum annuum HOM05D005777 ORTHO05D006854 2.3e-83 313.9 356 49.2
FvH4_5g11630 Fragaria vesca HOM05D005777 ORTHO05D006854 3.0e-83 313.5 378 46.8
RcHm_v2.0_Chr7g0186161 Rosa chinensis HOM05D005777 ORTHO05D006854 8.8e-83 312.0 382 46.6
FAN04G0792 Fragaria x ananassa HOM05D005777 ORTHO05D006854 1.3e-81 308.1 352 48.0
Lj8C204T6 Lonicera japonica HOM05D005777 ORTHO05D006854 2.8e-81 307.0 507 38.9
Glyma.08G025000 Glycine max HOM05D005777 ORTHO05D006854 8.2e-81 305.4 571 38.5
Solyc08g082720.4 Solanum lycopersicum HOM05D005777 ORTHO05D006854 2.2e-78 297.4 509 39.7
Sopen08g030950 Solanum pennellii HOM05D005777 ORTHO05D006854 2.9e-78 297.0 513 39.6
FAN13G2465 Fragaria x ananassa HOM05D005777 ORTHO05D006854 5.0e-78 296.2 629 35.9
PGSC0003DMG400012134 Solanum tuberosum HOM05D005777 ORTHO05D006854 6.5e-78 295.8 382 44.8
Phvul.002G300700 Phaseolus vulgaris HOM05D005777 ORTHO05D006854 8.5e-78 295.4 576 37.5
Glyma.05G218900 Glycine max HOM05D005777 ORTHO05D006854 2.5e-77 293.9 579 36.1
Lj4g0026879 Lotus japonicus HOM05D005777 ORTHO05D006854 7.2e-77 292.4 358 46.1
Lsat_1_v5_gn_6_83361 Lactuca sativa HOM05D005777 ORTHO05D006854 1.2e-76 291.6 502 39.0
MBI07_g24771_MAGBIO Magnolia biondii HOM05D005777 ORTHO05D006854 1.2e-76 291.6 449 42.1
Cpa.g.sc79.3 Carica papaya HOM05D005777 ORTHO05D006854 1.6e-76 291.2 580 36.7
Psat7g024000 Pisum sativum HOM05D005777 ORTHO05D006854 1.8e-75 287.7 347 45.0
vmacro13879 Vaccinium macrocarpon HOM05D005777 ORTHO05D006854 3.0e-75 287.0 410 40.7
Lalb_Chr05g0223951 Lupinus albus HOM05D005777 ORTHO05D006854 6.7e-75 285.8 396 41.7
CANSAT21G0853 Cannabis sativa HOM05D005777 ORTHO05D006854 7.5e-74 282.3 520 36.0
Nn1g00296 Nelumbo nucifera HOM05D005777 ORTHO05D006854 7.5e-74 282.3 431 40.8
CiPaw.11G117200 Carya illinoinensis HOM05D005777 ORTHO05D006854 6.3e-73 279.3 557 37.3
ECA240G0322 Erigeron canadensis HOM05D005777 ORTHO05D006854 5.3e-72 276.2 455 38.7
HanXRQChr03g0083721 Helianthus annuus HOM05D005777 ORTHO05D006854 1.2e-71 275.0 350 43.1
Eucgr.E00747 Eucalyptus grandis HOM05D005777 ORTHO05D006854 3.5e-71 273.5 612 34.5
Sabra07G0049700 Salix brachista HOM05D005777 ORTHO05D006854 4.5e-71 273.1 641 33.7
Actinidia22740 Actinidia chinensis HOM05D005777 ORTHO05D006854 1.0e-70 271.9 397 42.8
Medtr8g099725 Medicago truncatula HOM05D005777 ORTHO05D006854 2.9e-70 270.4 398 42.0
Thecc.08G166000 Theobroma cacao HOM05D005777 ORTHO05D006854 4.2e-69 266.5 458 38.6
FAN18G2480 Fragaria x ananassa HOM05D005777 ORTHO05D006854 2.7e-68 263.8 383 43.3
PGR042G2859 Punica granatum HOM05D005777 ORTHO05D006854 4.7e-68 263.1 468 38.0
Eucgr.E00956 Eucalyptus grandis HOM05D005777 ORTHO05D006854 8.0e-68 262.3 374 39.8
Oeu055021.1 Olea europaea HOM05D005777 ORTHO05D006854 5.2e-67 259.6 251 54.2
Eucgr.E00744 Eucalyptus grandis HOM05D005777 ORTHO05D006854 2.6e-66 257.3 632 31.5
Migut.E00735 Erythranthe guttata HOM05D005777 ORTHO05D006854 5.0e-62 243.0 246 53.3
Cc08_g16390 Coffea canephora HOM05D005777 ORTHO05D006854 8.6e-62 242.3 238 53.4
Manes.01G049500 Manihot esculenta HOM05D005777 ORTHO05D006854 4.7e-60 236.5 250 54.4
TPR.G3378 Trifolium pratense HOM05D005777 ORTHO05D006854 4.7e-60 236.5 397 37.5
DCAR_006511 Daucus carota HOM05D005777 ORTHO05D006854 2.3e-59 234.2 425 36.7
Migut.E01651 Erythranthe guttata HOM05D005777 ORTHO05D006854 2.3e-59 234.2 239 53.1
Sc01g0010430 Simmondsia chinensis HOM05D005777 ORTHO05D006854 2.4e-56 224.2 266 46.2
Aqoxy5G04312 Aquilegia oxysepala HOM05D005777 ORTHO05D006854 5.4e-56 223.0 400 37.2
PSO170G4328 Papaver somniferum HOM05D005777 ORTHO05D006854 5.9e-55 219.5 373 36.7
Ah.12g052840 Amaranthus hybridus HOM05D005777 ORTHO05D006854 3.8e-54 216.9 278 45.3
FAN08G0729 Fragaria x ananassa HOM05D005777 ORTHO05D006854 1.9e-53 214.5 341 40.8
EL10Ac5g12951 Beta vulgaris HOM05D005777 ORTHO05D006854 3.1e-51 207.2 246 48.0
Eucgr.E00762 Eucalyptus grandis HOM05D005777 ORTHO05D006854 4.0e-51 206.8 291 39.5
Hund14203 Selenicereus undatus HOM05D005777 ORTHO05D006854 2.0e-50 204.5 276 43.5
Gorai.005G117300 Gossypium raimondii HOM05D005777 ORTHO05D006854 1.1e-48 198.7 256 46.1
Gohir.A02G088000 Gossypium hirsutum HOM05D005777 ORTHO05D006854 2.7e-47 194.1 232 49.1
VMungo0251G0419 Vigna mungo HOM05D003100 ORTHO05D003533 8.6e-46 189.1 598 30.6
Eucgr.E00939 Eucalyptus grandis HOM05D005777 ORTHO05D006854 2.5e-45 187.6 199 49.2
Ca_17460_v3 Cicer arietinum L. HOM05D005777 ORTHO05D006854 2.8e-44 184.1 375 33.9
Duzib116G0305 Durio zibethinus HOM05D005777 ORTHO05D006854 1.5e-42 178.3 231 42.4
Eucgr.E00752 Eucalyptus grandis HOM05D005777 ORTHO05D006854 2.2e-41 174.5 649 27.0
FAN18G2579 Fragaria x ananassa HOM05D005777 ORTHO05D006854 4.9e-41 173.3 275 40.4
Dinv37498 Davidia involucrata HOM05D005777 ORTHO05D006854 8.3e-41 172.6 178 50.0
Ciclev10023874m.g Citrus clementina HOM05D005777 ORTHO05D006854 2.4e-40 171.0 159 56.0
AUR62019875 Chenopodium quinoa HOM05D005777 ORTHO05D006854 1.6e-39 168.3 197 46.2
Ciclev10023944m.g Citrus clementina HOM05D005777 ORTHO05D006854 4.3e-37 160.2 194 46.9
SGA_v2.0_scaffold74G24601 Striga asiatica HOM05D005777 ORTHO05D006854 2.8e-36 157.5 262 37.8
HPP92_024143 Vanilla planifolia HOM05D005777 ORTHO05D006854 2.3e-35 154.5 224 40.2
GSVIVG01019597001 Vitis vinifera HOM05D005777 ORTHO05D006854 2.3e-35 154.5 130 60.8
COL.COLO4_25066 Corchorus olitorius HOM05D000316 ORTHO05D006854 4.4e-34 150.2 191 45.0
ATR0602G092 Amborella trichopoda HOM05D005777 ORTHO05D006854 9.2e-32 142.5 242 36.4
Lsat_1_v5_gn_5_82800 Lactuca sativa HOM05D005777 ORTHO05D006854 7.8e-31 139.4 285 34.0
Lsat_1_v5_gn_9_112141 Lactuca sativa HOM05D005777 ORTHO05D006854 1.7e-30 138.3 115 59.1
Eucgr.E00969 Eucalyptus grandis HOM05D005777 ORTHO05D006854 3.3e-29 134.0 170 44.1
Eucgr.E00749 Eucalyptus grandis HOM05D005777 ORTHO05D006854 4.3e-29 133.7 157 45.2
AL6G44960 Arabidopsis lyrata HOM05D005777 ORTHO05D006854 1.2e-28 132.1 158 48.1
Thhalv10028849m.g Eutrema salsugineum HOM05D005777 ORTHO05D006854 1.2e-28 132.1 158 47.5
Eucgr.E01013 Eucalyptus grandis HOM05D005777 ORTHO05D006854 3.6e-28 130.6 170 43.5
Eucgr.E00900 Eucalyptus grandis HOM05D005777 ORTHO05D006854 4.7e-28 130.2 162 43.8
THA.LOC104813047 Tarenaya hassleriana HOM05D005777 ORTHO05D006854 1.8e-27 128.3 156 49.4
FAN04G0565 Fragaria x ananassa HOM05D005777 ORTHO05D006854 2.4e-27 127.9 100 62.0
AT4G10890 Arabidopsis thaliana HOM05D005777 ORTHO05D006854 3.1e-27 127.5 156 46.8
Carub.0006s2962 Capsella rubella HOM05D005777 ORTHO05D006854 8.9e-27 125.9 158 44.9
Sp6g06640 Schrenkiella parvula HOM05D005777 ORTHO05D006854 8.9e-27 125.9 158 49.4
CARHR255730 Cardamine hirsuta HOM05D005777 ORTHO05D006854 1.5e-26 125.2 158 47.5
BcaB01g01556 Brassica carinata HOM05D005777 ORTHO05D006854 1.1e-24 119.0 148 47.3
Eucgr.E00726 Eucalyptus grandis HOM05D005777 ORTHO05D006854 1.9e-24 118.2 137 46.0
Os09g0363400 Oryza sativa ssp. japonica HOM05D005777 ORTHO05D006854 1.9e-24 118.2 231 32.0
Eucgr.E00912 Eucalyptus grandis HOM05D005777 ORTHO05D006854 2.7e-23 114.4 109 49.5
Eucgr.E00696 Eucalyptus grandis HOM05D005777 ORTHO05D006854 4.6e-23 113.6 117 47.9
BcaC04g21086 Brassica carinata HOM05D005777 ORTHO05D006854 1.1e-21 109.0 158 43.0
Eucgr.E00895 Eucalyptus grandis HOM05D005777 ORTHO05D006854 1.1e-21 109.0 102 51.0
BraA09t38398Z Brassica rapa HOM05D005777 ORTHO05D006854 1.5e-21 108.6 156 42.9
AUR62007011 Chenopodium quinoa HOM05D005777 ORTHO05D006854 3.3e-21 107.5 477 26.6
Aa31LG9G11240 Aethionema arabicum HOM05D005777 ORTHO05D006854 9.6e-21 105.9 110 51.8
C09p35860 Brassica napus HOM05D005777 ORTHO05D006854 9.6e-21 105.9 159 41.5
Eucgr.E00894 Eucalyptus grandis HOM05D005777 ORTHO05D006854 9.6e-21 105.9 117 43.6
A09p28290 Brassica napus HOM05D005777 ORTHO05D006854 3.6e-20 104.0 151 45.0
BolC9t56419H Brassica oleracea HOM05D005777 ORTHO05D006854 1.1e-19 102.4 159 40.9
Actinidia27306 Actinidia chinensis HOM05D005777 ORTHO05D006854 1.4e-19 102.1 70 65.7
CDE03G0022 Ceratophyllum demersum HOM05D002476 ORTHO05D002652 2.4e-19 101.3 228 30.7
Eucgr.E00686 Eucalyptus grandis HOM05D005777 ORTHO05D006854 7.1e-16 89.7 94 47.9
Gohir.D02G103200 Gossypium hirsutum HOM05D005777 ORTHO05D006854 2.1e-15 88.2 406 27.6
SHI06955 Sapria himalayana HOM05D005777 ORTHO05D006854 3.0e-14 84.3 98 45.9
Eucgr.H03743 Eucalyptus grandis HOM05D005777 ORTHO05D006854 1.1e-13 82.4 77 55.8
Hma1.2p1_0338F.1_g129700 Hydrangea macrophylla HOM05D005777 ORTHO05D006854 1.8e-11 75.1 74 52.7
AagrBONN_evm.TU.Sc2ySwM_368.2767 Anthoceros agrestis HOM05D005777 ORTHO05D006854 2.6e-10 71.2 214 29.9
QL08p034398 Quercus lobata HOM05D000176 ORTHO05D000106 1.3e-09 68.9 81 39.5
QL06p042986 Quercus lobata HOM05D000529 ORTHO05D000472 1.7e-09 68.6 81 39.5
Eucgr.H03760 Eucalyptus grandis HOM05D005777 ORTHO05D006854 6.0e-07 60.1 59 57.6
FAN18G0036 Fragaria x ananassa HOM05D005777 ORTHO05D006854 7.9e-07 59.7 37 70.3
Lsat_1_v5_gn_3_40061 Lactuca sativa HOM05D005777 ORTHO05D006854 1.3e-06 58.9 34 70.6
SHI06954 Sapria himalayana HOM05D000023 ORTHO05D000014 1.8e-06 58.5 61 45.9


User provided reference genes

Program Settings