Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0007905 Sechium edule HOM05D005412 ORTHO05D006096 0.0e+00 3876.6 1941 100.0
ClCG05G010030 Citrullus lanatus HOM05D005412 ORTHO05D006096 0.0e+00 3236.8 1977 83.3
MELO3C019513.2 Cucumis melo HOM05D005412 ORTHO05D006096 0.0e+00 3204.8 1949 83.3
CsaV3_3G018540 Cucumis sativus L. HOM05D005412 ORTHO05D006096 0.0e+00 3102.0 1882 83.3
Haze_01830 Corylus avellana HOM05D005412 ORTHO05D006096 0.0e+00 1995.3 2042 54.0
Prupe.8G123400 Prunus persica HOM05D005412 ORTHO05D006096 0.0e+00 1991.9 2012 55.2
Dinv42150 Davidia involucrata HOM05D005412 ORTHO05D006096 0.0e+00 1974.1 2021 54.2
Potri.009G102900 Populus trichocarpa HOM05D005412 ORTHO05D006096 0.0e+00 1932.1 2005 52.6
QL11p036050 Quercus lobata HOM05D005412 ORTHO05D006096 0.0e+00 1929.1 2012 53.2
CiPaw.05G051900 Carya illinoinensis HOM05D005412 ORTHO05D006096 0.0e+00 1913.7 2015 53.1
Potri.004G141700 Populus trichocarpa HOM05D005412 ORTHO05D006096 0.0e+00 1913.3 2005 53.0
MD05G1079500 Malus domestica HOM05D005412 ORTHO05D006096 0.0e+00 1912.1 1981 54.1
MD10G1093800 Malus domestica HOM05D005412 ORTHO05D006096 0.0e+00 1909.0 2007 53.6
COL.COLO4_32667 Corchorus olitorius HOM05D005412 ORTHO05D006096 0.0e+00 1898.2 2005 52.9
GSVIVG01031759001 Vitis vinifera HOM05D005412 ORTHO05D006096 0.0e+00 1892.9 1985 52.8
Dinv23615 Davidia involucrata HOM05D005412 ORTHO05D006096 0.0e+00 1886.3 2009 53.0
CiPaw.06G143300 Carya illinoinensis HOM05D005412 ORTHO05D006096 0.0e+00 1880.5 2008 53.3
RcHm_v2.0_Chr6g0256971 Rosa chinensis HOM05D005412 ORTHO05D006096 0.0e+00 1880.5 2002 52.7
TWI75G0165 Tripterygium wilfordii HOM05D005412 ORTHO05D006096 0.0e+00 1868.2 2007 50.9
Ciclev10027665m.g Citrus clementina HOM05D005412 ORTHO05D006096 0.0e+00 1865.9 2004 51.7
Thecc.02G099500 Theobroma cacao HOM05D005412 ORTHO05D006096 0.0e+00 1864.0 2010 52.3
FAN24G2004 Fragaria x ananassa HOM05D005412 ORTHO05D006096 0.0e+00 1863.6 2024 52.5
TWI79G0096 Tripterygium wilfordii HOM05D005412 ORTHO05D006096 0.0e+00 1860.9 2006 50.9
FAN15G2385 Fragaria x ananassa HOM05D005412 ORTHO05D006096 0.0e+00 1860.5 2030 52.2
Duzib052G1101 Durio zibethinus HOM05D005412 ORTHO05D006096 0.0e+00 1853.6 2006 51.8
TAR628G0752 Trochodendron aralioides HOM05D005412 ORTHO05D006096 0.0e+00 1853.6 2044 51.3
CSS0011349 Camellia sinensis var. sinensis HOM05D005412 ORTHO05D006096 0.0e+00 1844.7 2018 51.2
Duzib248G0232 Durio zibethinus HOM05D005412 ORTHO05D006096 0.0e+00 1843.2 1989 51.8
TAR376G0189 Trochodendron aralioides HOM05D005412 ORTHO05D006096 0.0e+00 1840.1 2047 50.6
Manes.10G065500 Manihot esculenta HOM05D005412 ORTHO05D006096 0.0e+00 1824.7 2016 51.4
Sabra09G0078800 Salix brachista HOM05D005412 ORTHO05D006096 0.0e+00 1824.7 2025 50.3
Gorai.005G238500 Gossypium raimondii HOM05D005412 ORTHO05D006096 0.0e+00 1816.2 2035 50.7
FAN27G2299 Fragaria x ananassa HOM05D005412 ORTHO05D006096 0.0e+00 1815.4 2019 51.6
Rhsim11G0166400 Rhododendron simsii HOM05D005412 ORTHO05D006096 0.0e+00 1766.9 2017 49.5
Glyma.02G133400 Glycine max HOM05D005412 ORTHO05D006096 0.0e+00 1764.6 2016 49.9
Sabra04G0093700 Salix brachista HOM05D005412 ORTHO05D006096 0.0e+00 1757.3 2027 50.4
Eucgr.I01159 Eucalyptus grandis HOM05D005412 ORTHO05D006096 0.0e+00 1749.6 2008 48.6
Glyma.07G211600 Glycine max HOM05D005412 ORTHO05D006096 0.0e+00 1740.7 2015 49.4
Lalb_Chr09g0328271 Lupinus albus HOM05D005412 ORTHO05D006096 0.0e+00 1740.3 2016 49.7
Medtr4g086370 Medicago truncatula HOM05D005412 ORTHO05D006096 0.0e+00 1734.5 2021 48.6
Nn5g30243 Nelumbo nucifera HOM05D005412 ORTHO05D006096 0.0e+00 1731.1 2036 49.0
Ca_18676_v3 Cicer arietinum L. HOM05D005412 ORTHO05D006096 0.0e+00 1729.5 2023 48.5
Lj4g0027932 Lotus japonicus HOM05D005412 ORTHO05D006096 0.0e+00 1719.9 1995 48.7
VMungo0251G1021 Vigna mungo HOM05D005412 ORTHO05D006096 0.0e+00 1694.5 2017 48.5
arahy.Tifrunner.gnm1.ann1.Q5Y61J Arachis hypogaea HOM05D005412 ORTHO05D006096 0.0e+00 1687.2 2002 48.0
Psat7g124160 Pisum sativum HOM05D005412 ORTHO05D006096 0.0e+00 1684.8 2024 47.6
PSO210G3961 Papaver somniferum HOM05D005412 ORTHO05D006096 0.0e+00 1679.5 2007 47.5
PSO170G0229 Papaver somniferum HOM05D005412 ORTHO05D006096 0.0e+00 1674.1 2006 47.4
arahy.Tifrunner.gnm1.ann1.4LZP30 Arachis hypogaea HOM05D005412 ORTHO05D006096 0.0e+00 1657.9 2003 47.4
vmacro02202 Vaccinium macrocarpon HOM05D005412 ORTHO05D006096 0.0e+00 1654.8 2031 47.7
Phvul.003G295800 Phaseolus vulgaris HOM05D005412 ORTHO05D006096 0.0e+00 1647.5 2017 47.8
THA.LOC104800351 Tarenaya hassleriana HOM05D005412 ORTHO05D006096 0.0e+00 1622.1 1982 46.6
Cc02_g18700 Coffea canephora HOM05D005412 ORTHO05D006096 0.0e+00 1620.5 2030 46.3
Thhalv10019879m.g Eutrema salsugineum HOM05D005412 ORTHO05D006096 0.0e+00 1591.2 1980 46.6
DCAR_022030 Daucus carota HOM05D005412 ORTHO05D006096 0.0e+00 1590.1 1997 45.5
AT3G19190 Arabidopsis thaliana HOM05D005412 ORTHO05D006096 0.0e+00 1587.0 1986 46.2
Migut.B00339 Erythranthe guttata HOM05D005412 ORTHO05D006096 0.0e+00 1584.3 1998 46.6
CAN.G1041.23 Capsicum annuum HOM05D005412 ORTHO05D006096 0.0e+00 1569.3 2019 45.9
AL3G32570 Arabidopsis lyrata HOM05D005412 ORTHO05D006096 0.0e+00 1562.7 1986 45.9
Carub.0003s1902 Capsella rubella HOM05D005412 ORTHO05D006096 0.0e+00 1561.6 1987 45.9
Sp3g17260 Schrenkiella parvula HOM05D005412 ORTHO05D006096 0.0e+00 1557.7 1986 46.1
Solyc01g108160.3 Solanum lycopersicum HOM05D005412 ORTHO05D006096 0.0e+00 1556.2 2008 45.7
Aa31LG8G5990 Aethionema arabicum HOM05D005412 ORTHO05D006096 0.0e+00 1555.8 1975 45.9
CARHR094600 Cardamine hirsuta HOM05D005412 ORTHO05D006096 0.0e+00 1553.9 1976 46.4
Sopen01g050390 Solanum pennellii HOM05D005412 ORTHO05D006096 0.0e+00 1545.4 2010 45.7
BcaB06g25975 Brassica carinata HOM05D005412 ORTHO05D006096 0.0e+00 1543.5 1971 46.0
AUR62011444 Chenopodium quinoa HOM05D005412 ORTHO05D006096 0.0e+00 1543.5 2027 45.0
MBI02_g17325_MAGBIO Magnolia biondii HOM05D005412 ORTHO05D006096 0.0e+00 1542.7 2074 44.3
Peaxi162Scf00016g01825 Petunia axillaris HOM05D005412 ORTHO05D006096 0.0e+00 1539.6 2000 46.0
A05p30450 Brassica napus HOM05D005412 ORTHO05D006096 0.0e+00 1536.5 1987 45.6
Aqoxy5G01253 Aquilegia oxysepala HOM05D005412 ORTHO05D006096 0.0e+00 1533.1 2040 45.8
BraA05t21884Z Brassica rapa HOM05D005412 ORTHO05D006096 0.0e+00 1520.0 1991 45.5
BcaNung06981 Brassica carinata HOM05D005412 ORTHO05D006096 0.0e+00 1512.7 1987 45.2
BolC5t33332H Brassica oleracea HOM05D005412 ORTHO05D006096 0.0e+00 1512.7 1987 45.2
C05p46050 Brassica napus HOM05D005412 ORTHO05D006096 0.0e+00 1510.4 1987 45.2
Lj9C358T17 Lonicera japonica HOM05D005412 ORTHO05D006096 0.0e+00 1500.7 1958 46.1
Nitab4.5_0003503g0010 Nicotiana tabacum HOM05D005412 ORTHO05D006096 0.0e+00 1474.5 1926 45.3
Hund00331 Selenicereus undatus HOM05D005412 ORTHO05D006096 0.0e+00 1470.3 2003 43.7
Sc14g0001650 Simmondsia chinensis HOM05D005412 ORTHO05D006096 0.0e+00 1466.1 1929 44.9
HanXRQChr03g0072341 Helianthus annuus HOM05D005412 ORTHO05D006096 0.0e+00 1461.4 1967 43.7
EL10Ac9g21835 Beta vulgaris HOM05D005412 ORTHO05D006096 0.0e+00 1449.1 2123 42.0
FvH4_2g06220 Fragaria vesca HOM05D005412 ORTHO05D006096 0.0e+00 1448.7 1725 48.8
Ah.02g117120 Amaranthus hybridus HOM05D005412 ORTHO05D006096 0.0e+00 1444.5 2012 43.6
FAN20G2783 Fragaria x ananassa HOM05D005412 ORTHO05D006096 0.0e+00 1436.8 1719 48.5
Lsat_1_v5_gn_9_110121 Lactuca sativa HOM05D005412 ORTHO05D006096 0.0e+00 1434.9 1956 43.7
SGA_v2.0_scaffold90G27665 Striga asiatica HOM05D005412 ORTHO05D006096 0.0e+00 1425.6 2004 43.8
Nitab4.5_0003080g0090 Nicotiana tabacum HOM05D005412 ORTHO05D006096 0.0e+00 1402.5 1936 43.9
ECA240G0709 Erigeron canadensis HOM05D005412 ORTHO05D006096 0.0e+00 1387.9 1919 42.6
Gohir.D02G210500 Gossypium hirsutum HOM05D005412 ORTHO05D006096 0.0e+00 1375.1 1457 52.4
Gohir.A03G189900 Gossypium hirsutum HOM05D005412 ORTHO05D006096 0.0e+00 1365.9 1450 52.3
TPR.G30829 Trifolium pratense HOM05D005412 ORTHO05D006096 0.0e+00 1311.6 1784 43.0
ATR0100G063 Amborella trichopoda HOM05D005412 ORTHO05D006096 0.0e+00 1273.5 2059 40.2
Cpa.g.sc62.21 Carica papaya HOM05D005412 ORTHO05D006096 0.0e+00 1251.9 2005 39.8
AUR62016618 Chenopodium quinoa HOM05D005412 ORTHO05D006096 0.0e+00 1173.7 1733 41.8
Zm00001eb280540 Zea mays HOM05D005412 ORTHO05D006096 0.0e+00 1081.2 2004 35.1
Oeu025571.1 Olea europaea HOM05D005412 ORTHO05D006096 1.2e-289 1001.1 1707 38.5
Atru.chr5.2730 Acer truncatum HOM05D005412 ORTHO05D006096 4.1e-287 992.6 1202 47.9
SEGI_28745 Sequoiadendron giganteum HOM05D005412 ORTHO05D006096 7.0e-279 965.3 2131 32.8
Zm00001eb380180 Zea mays HOM05D005412 ORTHO05D006096 4.3e-252 876.3 1464 36.7
CDE09G1352 Ceratophyllum demersum HOM05D005412 ORTHO05D006096 1.1e-250 871.7 1655 35.0
Mapoly0038s0067 Marchantia polymorpha HOM05D005412 ORTHO05D006096 1.7e-237 827.8 2168 30.7
AagrBONN_evm.TU.Sc2ySwM_369.474 Anthoceros agrestis HOM05D005412 ORTHO05D006096 2.1e-206 724.5 2080 29.7
unitig_21.g20750 Utricularia gibba HOM05D005412 ORTHO05D006096 3.9e-197 693.7 1965 30.1
Atru.chr5.2729 Acer truncatum HOM05D005412 ORTHO05D006096 3.6e-190 670.6 672 56.0
Pp3c13_15610 Physcomitrium patens HOM05D005412 ORTHO05D006096 1.1e-159 569.3 1856 27.1
SHI05373 Sapria himalayana HOM05D005412 ORTHO05D006096 2.6e-148 531.6 1174 31.9
HPP92_028321 Vanilla planifolia HOM05D005412 ORTHO05D006096 5.4e-146 523.9 1692 27.3
Actinidia12956 Actinidia chinensis HOM05D005412 ORTHO05D006096 1.6e-142 512.3 428 62.9
CDE09G1277 Ceratophyllum demersum HOM05D005412 ORTHO05D006096 1.4e-138 499.2 399 62.4
Oeu025573.1 Olea europaea HOM05D005412 ORTHO05D006096 1.4e-125 456.1 337 69.4
Os06g0267600 Oryza sativa ssp. japonica HOM05D005412 ORTHO05D006096 5.1e-120 437.6 384 57.0
FvH4_2g06211 Fragaria vesca HOM05D005412 ORTHO05D006096 1.9e-119 435.6 277 80.1
AUR62016617 Chenopodium quinoa HOM05D005412 ORTHO05D006096 2.5e-103 382.1 276 68.8
Actinidia00446 Actinidia chinensis HOM05D005412 ORTHO05D006096 9.6e-103 380.2 358 57.3
Actinidia00447 Actinidia chinensis HOM05D005412 ORTHO05D006096 6.3e-102 377.5 442 48.4
Actinidia12957 Actinidia chinensis HOM05D005412 ORTHO05D006096 1.1e-98 366.7 1121 29.3
TPR.G30995 Trifolium pratense HOM05D005412 ORTHO05D006096 7.9e-81 307.4 198 76.3
SMO196G0062 Selaginella moellendorffii HOM05D005412 ORTHO05D006096 2.0e-71 276.2 370 44.6
SHI05374 Sapria himalayana HOM05D005412 ORTHO05D006096 1.2e-65 256.9 499 35.9
Oeu003689.1 Olea europaea HOM05D005412 ORTHO05D006096 1.2e-60 240.4 246 53.3
MBI18_g07589_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D006096 1.4e-56 226.9 183 62.3
MBI11_g39905_MAGBIO Magnolia biondii HOM05D005412 ORTHO05D006096 3.5e-52 212.2 181 62.4
HPP92_028322 Vanilla planifolia HOM05D005412 ORTHO05D006096 5.0e-51 208.4 218 49.5
MCO03G368 Micromonas commoda HOM05D005412 ORTHO05D006096 1.1e-40 174.1 367 32.4
SHI05371 Sapria himalayana HOM05D005412 ORTHO05D006096 4.6e-36 158.7 174 52.3
Migut.B00336 Erythranthe guttata HOM05D005412 ORTHO05D006096 8.9e-32 144.4 319 31.3
CBR_g37898 Chara braunii HOM05D000019 ORTHO05D000048 2.2e-30 139.8 595 23.2
Hma1.2p1_0028F.1_g017490 Hydrangea macrophylla HOM05D005412 ORTHO05D006096 4.6e-28 132.1 83 73.5
Cre09.g408950 Chlamydomonas reinhardtii HOM05D005412 ORTHO05D006096 7.3e-26 124.8 215 36.3
PRCOL_00003309 Prasinoderma coloniale HOM05D005412 ORTHO05D006096 7.3e-26 124.8 319 27.9
CsaV3_3G018530 Cucumis sativus L. HOM05D005412 ORTHO05D006096 2.6e-23 116.3 108 63.0
Dinv23623 Davidia involucrata HOM05D005412 ORTHO05D006096 1.9e-21 110.2 67 74.6
Dinv23614 Davidia involucrata HOM05D005412 ORTHO05D006096 5.4e-21 108.6 67 73.1
Dinv23622 Davidia involucrata HOM05D005412 ORTHO05D006096 1.3e-19 104.0 64 75.0
Migut.B00338 Erythranthe guttata HOM05D005412 ORTHO05D006096 3.9e-19 102.4 284 26.1
CDE02G1280 Ceratophyllum demersum HOM05D005412 ORTHO05D006096 2.5e-18 99.8 80 61.2
CBR_g37914 Chara braunii HOM05D000019 ORTHO05D000048 3.3e-18 99.4 100 49.0
PGSC0003DMG400025793 Solanum tuberosum HOM05D005412 ORTHO05D006096 1.8e-16 93.6 65 66.2
TPR.G30833 Trifolium pratense HOM05D005412 ORTHO05D006096 1.8e-16 93.6 68 72.1
Rhsim11G0175200 Rhododendron simsii HOM05D063897 ORTHO05D006096 2.9e-14 86.3 99 49.5
CBR_g37896 Chara braunii HOM05D012618 ORTHO05D000497 3.8e-14 85.9 125 40.8
BcaNung06609 Brassica carinata HOM05D005412 ORTHO05D006096 1.3e-11 77.4 56 69.6
Hma1.2p1_0027F.1_g017200 Hydrangea macrophylla HOM05D005412 ORTHO05D006096 3.6e-09 69.3 55 60.0


User provided reference genes

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