Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0007886 Sechium edule HOM05D007342 ORTHO05D009252 1.8e-221 772.3 410 100.0
ClCG06G005120 Citrullus lanatus HOM05D007342 ORTHO05D009252 5.5e-133 478.4 418 67.2
MELO3C021329.2 Cucumis melo HOM05D007342 ORTHO05D009252 1.0e-118 431.0 419 62.8
CsaV3_6G022280 Cucumis sativus L. HOM05D007342 ORTHO05D009252 3.4e-114 416.0 425 60.7
Dinv29744 Davidia involucrata HOM05D007342 ORTHO05D009252 1.7e-41 174.5 400 34.2
CSS0019788 Camellia sinensis var. sinensis HOM05D007342 ORTHO05D009252 2.4e-35 154.1 386 38.3
Duzib212G0754 Durio zibethinus HOM05D007342 ORTHO05D009252 2.9e-33 147.1 328 38.1
Cpa.g.sc16.174 Carica papaya HOM05D007342 ORTHO05D009252 1.1e-32 145.2 343 37.3
GSVIVG01017735001 Vitis vinifera HOM05D007342 ORTHO05D009252 3.9e-30 136.7 373 36.5
Cfa015389 Carpinus fangiana HOM05D007342 ORTHO05D009252 6.7e-30 136.0 381 34.1
Haze_01197 Corylus avellana HOM05D007342 ORTHO05D009252 1.3e-28 131.7 386 34.2
Prupe.1G135700 Prunus persica HOM05D007342 ORTHO05D009252 1.6e-28 131.3 339 38.3
RcHm_v2.0_Chr4g0422351 Rosa chinensis HOM05D007342 ORTHO05D009252 4.8e-28 129.8 384 36.2
TWI53G0473 Tripterygium wilfordii HOM05D007342 ORTHO05D009252 4.8e-28 129.8 410 34.4
Actinidia14301 Actinidia chinensis HOM05D007342 ORTHO05D009252 8.2e-28 129.0 438 32.9
MD13G1168100 Malus domestica HOM05D007342 ORTHO05D009252 1.2e-26 125.2 393 34.9
Potri.008G222000 Populus trichocarpa HOM05D007342 ORTHO05D009252 1.2e-26 125.2 395 33.2
QL06p008994 Quercus lobata HOM05D007342 ORTHO05D009252 2.0e-26 124.4 364 36.3
Actinidia00019 Actinidia chinensis HOM05D007342 ORTHO05D009252 3.4e-26 123.6 436 32.1
COL.COLO4_13866 Corchorus olitorius HOM05D007342 ORTHO05D009252 1.7e-25 121.3 397 33.0
MSTRG.10096 Avicennia marina HOM05D007342 ORTHO05D009252 2.9e-25 120.6 418 32.1
Thecc.04G285100 Theobroma cacao HOM05D007342 ORTHO05D009252 1.1e-24 118.6 384 32.8
FvH4_4g18220 Fragaria vesca HOM05D007342 ORTHO05D009252 5.5e-24 116.3 393 32.8
FAN12G3549 Fragaria x ananassa HOM05D007342 ORTHO05D009252 5.5e-24 116.3 393 32.8
PGR031G1889 Punica granatum HOM05D007342 ORTHO05D009252 5.5e-24 116.3 408 31.6
FAN12G0202 Fragaria x ananassa HOM05D007342 ORTHO05D009252 1.6e-23 114.8 393 32.6
Gorai.006G262500 Gossypium raimondii HOM05D007342 ORTHO05D009252 2.1e-23 114.4 344 37.2
Sabra08G0152900 Salix brachista HOM05D007342 ORTHO05D009252 4.6e-23 113.2 410 31.7
Eucgr.L03117 Eucalyptus grandis HOM05D007342 ORTHO05D009252 6.1e-23 112.8 387 32.3
FAN17G1678 Fragaria x ananassa HOM05D007342 ORTHO05D009252 1.0e-22 112.1 354 34.7
Sc19g0005330 Simmondsia chinensis HOM05D007342 ORTHO05D009252 1.8e-22 111.3 371 32.6
Manes.03G195600 Manihot esculenta HOM05D007342 ORTHO05D009252 5.1e-22 109.8 379 33.5
THA.LOC104820266 Tarenaya hassleriana HOM05D007342 ORTHO05D009252 1.1e-21 108.6 351 33.3
Cc03_g01870 Coffea canephora HOM05D007342 ORTHO05D009252 2.5e-21 107.5 358 30.7
Atru.chr4.2846 Acer truncatum HOM05D007342 ORTHO05D009252 7.4e-21 105.9 339 34.2
Solyc01g080760.4 Solanum lycopersicum HOM05D007342 ORTHO05D009252 7.4e-21 105.9 406 29.8
Sp7g14200 Schrenkiella parvula HOM05D007342 ORTHO05D009252 9.7e-21 105.5 379 33.0
SGA_v2.0_scaffold67G22631 Striga asiatica HOM05D007342 ORTHO05D009252 1.3e-20 105.1 389 29.8
Nitab4.5_0000191g0200 Nicotiana tabacum HOM05D007342 ORTHO05D009252 2.2e-20 104.4 476 27.9
Gohir.A09G238800 Gossypium hirsutum HOM05D007342 ORTHO05D009252 2.8e-20 104.0 330 35.8
Aqoxy5G00727 Aquilegia oxysepala HOM05D007342 ORTHO05D009252 8.2e-20 102.4 357 31.7
CANSAT78G2360 Cannabis sativa HOM05D007342 ORTHO05D009252 2.4e-19 100.9 425 29.6
Sopen01g030760 Solanum pennellii HOM05D007342 ORTHO05D009252 1.5e-18 98.2 406 28.8
Nitab4.5_0000059g0470 Nicotiana tabacum HOM05D007342 ORTHO05D009252 2.6e-18 97.4 443 27.8
PGSC0003DMG400006281 Solanum tuberosum HOM05D007342 ORTHO05D009252 1.7e-17 94.7 406 27.8
Nn4g25834 Nelumbo nucifera HOM05D007342 ORTHO05D009252 2.9e-17 94.0 406 29.1
Ciclev10004639m.g Citrus clementina HOM05D007342 ORTHO05D009252 3.8e-17 93.6 347 30.8
Eucgr.B01323 Eucalyptus grandis HOM05D007342 ORTHO05D009252 5.0e-17 93.2 367 30.2
Glyma.07G247200 Glycine max HOM05D007342 ORTHO05D009252 5.0e-17 93.2 356 32.9
AL7G39470 Arabidopsis lyrata HOM05D007342 ORTHO05D009252 1.1e-16 92.0 369 32.2
Gohir.D09G239700 Gossypium hirsutum HOM05D007342 ORTHO05D009252 1.4e-16 91.7 373 31.6
Hund19378 Selenicereus undatus HOM05D007342 ORTHO05D009252 1.4e-16 91.7 412 32.8
Migut.G00157 Erythranthe guttata HOM05D007342 ORTHO05D009252 1.9e-16 91.3 409 29.3
Lj3P820T26 Lonicera japonica HOM05D007342 ORTHO05D009252 2.7e-15 87.4 419 31.5
Lj4g0010877 Lotus japonicus HOM05D007342 ORTHO05D009252 3.6e-15 87.0 384 31.5
arahy.Tifrunner.gnm1.ann1.4CZB08 Arachis hypogaea HOM05D007342 ORTHO05D009252 4.7e-15 86.7 334 32.3
Phvul.003G105800 Phaseolus vulgaris HOM05D007342 ORTHO05D009252 6.1e-15 86.3 390 31.8
Aa31LG10G6280 Aethionema arabicum HOM05D007342 ORTHO05D009252 7.9e-15 85.9 315 32.7
VMungo1215G0467 Vigna mungo HOM05D005283 ORTHO05D006769 7.9e-15 85.9 360 32.5
Glyma.17G026800 Glycine max HOM05D007342 ORTHO05D009252 2.3e-14 84.3 391 28.4
Peaxi162Scf01123g00234 Petunia axillaris HOM05D007342 ORTHO05D009252 3.0e-14 84.0 374 31.0
Medtr4g119920 Medicago truncatula HOM05D007342 ORTHO05D009252 8.8e-14 82.4 340 31.8
Lj3P817T41 Lonicera japonica HOM05D007342 ORTHO05D009252 1.1e-13 82.0 278 33.8
Lalb_Chr12g0196601 Lupinus albus HOM05D007342 ORTHO05D009252 2.0e-13 81.3 361 29.6
Thhalv10025032m.g Eutrema salsugineum HOM05D007342 ORTHO05D009252 2.6e-13 80.9 367 30.0
Rhsim02G0008900 Rhododendron simsii HOM05D007342 ORTHO05D009252 2.6e-13 80.9 278 32.0
Carub.0007s2583 Capsella rubella HOM05D007342 ORTHO05D009252 3.3e-13 80.5 379 30.9
Ca_21491_v3 Cicer arietinum L. HOM05D005283 ORTHO05D006769 3.3e-13 80.5 350 31.7
AUR62020686 Chenopodium quinoa HOM05D007342 ORTHO05D009252 7.4e-13 79.3 394 30.5
ECA240G4261 Erigeron canadensis HOM05D007342 ORTHO05D009252 2.8e-12 77.4 389 30.3
arahy.Tifrunner.gnm1.ann1.0PW7WM Arachis hypogaea HOM05D007342 ORTHO05D009252 4.8e-12 76.6 436 28.9
CARHR290340 Cardamine hirsuta HOM05D007342 ORTHO05D009252 6.3e-12 76.3 330 31.5
Lsat_1_v5_gn_5_56841 Lactuca sativa HOM05D007342 ORTHO05D009252 1.8e-11 74.7 355 29.0
vmacro15234 Vaccinium macrocarpon HOM05D007342 ORTHO05D009252 2.0e-10 71.2 335 30.7
TPR.G3194 Trifolium pratense HOM05D007342 ORTHO05D009252 4.5e-10 70.1 387 30.5
AT4G15820 Arabidopsis thaliana HOM05D007342 ORTHO05D009252 5.9e-10 69.7 325 29.8
AUR62028039 Chenopodium quinoa HOM05D007342 ORTHO05D009252 1.0e-09 68.9 383 29.5
BcaC06g33445 Brassica carinata HOM05D007342 ORTHO05D009252 1.5e-08 65.1 324 29.6
C07p47420 Brassica napus HOM05D007342 ORTHO05D009252 1.5e-08 65.1 324 29.6
BolC7t45269H Brassica oleracea HOM05D007342 ORTHO05D009252 1.5e-08 65.1 324 29.6
BraA03t14036Z Brassica rapa HOM05D007342 ORTHO05D009252 4.2e-08 63.5 323 28.2
SalBow2G3523 Salvia bowleyana HOM05D007342 ORTHO05D009252 9.4e-08 62.4 360 28.3
unitig_37.g12398 Utricularia gibba HOM05D007342 ORTHO05D009252 3.6e-07 60.5 412 25.7
CiPaw.01G148300 Carya illinoinensis HOM05D007342 ORTHO05D009252 1.4e-06 58.5 203 31.0
PSO210G2737 Papaver somniferum HOM05D007342 ORTHO05D009252 1.4e-06 58.5 372 26.3
PSO832G2203 Papaver somniferum HOM05D007342 ORTHO05D009252 8.8e-06 55.8 249 29.3


User provided reference genes

Program Settings