Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0007878 Sechium edule HOM05D005015 ORTHO05D005696 1.4e-84 316.2 164 100.0
Sed0007367 Sechium edule HOM05D005015 ORTHO05D005696 5.3e-79 297.7 190 86.3
Sed0025514 Sechium edule HOM05D005015 ORTHO05D005696 5.3e-79 297.7 190 86.3
CSS0020927 Camellia sinensis var. sinensis HOM05D005015 ORTHO05D005696 5.7e-73 277.7 192 78.1
Potri.013G137900 Populus trichocarpa HOM05D005015 ORTHO05D005696 1.1e-71 273.5 185 80.0
PGR111G0021 Punica granatum HOM05D005015 ORTHO05D005696 1.2e-70 270.0 185 78.4
RcHm_v2.0_CPg0502451 Rosa chinensis HOM05D005015 ORTHO05D005696 1.0e-69 266.9 185 77.3
Lsat_1_v5_gn_1_38680 Lactuca sativa HOM05D005015 ORTHO05D005696 5.0e-69 264.6 182 78.6
BolSC37t60772H Brassica oleracea HOM05D005015 ORTHO05D005696 8.5e-69 263.8 195 72.8
BraSC140t45592Z Brassica rapa HOM05D005015 ORTHO05D005696 8.5e-69 263.8 195 72.8
LjContig00489g0021854 Lotus japonicus HOM05D005015 ORTHO05D005696 8.5e-69 263.8 190 75.8
Ah.10g027630 Amaranthus hybridus HOM05D005015 ORTHO05D005696 1.1e-68 263.5 182 78.0
CARHR281880 Cardamine hirsuta HOM05D005015 ORTHO05D005696 1.5e-68 263.1 185 76.2
Solyc00g500333.1 Solanum lycopersicum HOM05D005015 ORTHO05D005696 2.5e-68 262.3 165 84.2
ATCG00130 Arabidopsis thaliana HOM05D005015 ORTHO05D005696 7.2e-68 260.8 185 75.1
BolSC46t60983H Brassica oleracea HOM05D005015 ORTHO05D005696 2.1e-67 259.2 196 71.4
Solyc00g500322.1 Solanum lycopersicum HOM05D005015 ORTHO05D005696 4.0e-66 255.0 170 80.6
BolSC29t60569H Brassica oleracea HOM05D005015 ORTHO05D005696 5.2e-66 254.6 197 70.1
CAN.G877.4 Capsicum annuum HOM05D005015 ORTHO05D005696 1.5e-65 253.1 186 74.2
DCAR_032470 Daucus carota HOM05D005015 ORTHO05D005696 1.5e-65 253.1 181 75.1
LjContig00318g0021444 Lotus japonicus HOM05D005015 ORTHO05D005696 2.0e-65 252.7 192 71.4
Aa31csc39G190 Aethionema arabicum HOM05D005015 ORTHO05D005696 3.3e-65 251.9 192 71.9
BraSC140t45595Z Brassica rapa HOM05D005015 ORTHO05D005696 5.7e-65 251.1 194 70.6
BolSC45t60880H Brassica oleracea HOM05D005015 ORTHO05D005696 7.5e-65 250.8 188 72.3
Hund03959 Selenicereus undatus HOM05D005015 ORTHO05D005696 9.7e-65 250.4 182 75.3
Hund19316 Selenicereus undatus HOM05D005015 ORTHO05D005696 9.7e-65 250.4 182 75.3
Hund27454 Selenicereus undatus HOM05D005015 ORTHO05D005696 9.7e-65 250.4 182 75.3
Hund27640 Selenicereus undatus HOM05D005015 ORTHO05D005696 9.7e-65 250.4 182 75.3
Hund27652 Selenicereus undatus HOM05D005015 ORTHO05D005696 9.7e-65 250.4 182 75.3
Hund27672 Selenicereus undatus HOM05D005015 ORTHO05D005696 9.7e-65 250.4 182 75.3
Hund27697 Selenicereus undatus HOM05D005015 ORTHO05D005696 9.7e-65 250.4 182 75.3
Hund27742 Selenicereus undatus HOM05D005015 ORTHO05D005696 9.7e-65 250.4 182 75.3
Hund27807 Selenicereus undatus HOM05D005015 ORTHO05D005696 9.7e-65 250.4 182 75.3
Hund27824 Selenicereus undatus HOM05D005015 ORTHO05D005696 9.7e-65 250.4 182 75.3
Hund27931 Selenicereus undatus HOM05D005015 ORTHO05D005696 9.7e-65 250.4 182 75.3
Hund27946 Selenicereus undatus HOM05D005015 ORTHO05D005696 9.7e-65 250.4 182 75.3
Hund27994 Selenicereus undatus HOM05D005015 ORTHO05D005696 9.7e-65 250.4 182 75.3
Hund28016 Selenicereus undatus HOM05D005015 ORTHO05D005696 9.7e-65 250.4 182 75.3
Hund28060 Selenicereus undatus HOM05D005015 ORTHO05D005696 9.7e-65 250.4 182 75.3
Hund28129 Selenicereus undatus HOM05D005015 ORTHO05D005696 9.7e-65 250.4 182 75.3
Hund28142 Selenicereus undatus HOM05D005015 ORTHO05D005696 9.7e-65 250.4 182 75.3
Hund28151 Selenicereus undatus HOM05D005015 ORTHO05D005696 9.7e-65 250.4 182 75.3
Hund28161 Selenicereus undatus HOM05D005015 ORTHO05D005696 9.7e-65 250.4 182 75.3
Hund28177 Selenicereus undatus HOM05D005015 ORTHO05D005696 9.7e-65 250.4 182 75.3
Hund28187 Selenicereus undatus HOM05D005015 ORTHO05D005696 9.7e-65 250.4 182 75.3
Hund28210 Selenicereus undatus HOM05D005015 ORTHO05D005696 9.7e-65 250.4 182 75.3
Hund28258 Selenicereus undatus HOM05D005015 ORTHO05D005696 9.7e-65 250.4 182 75.3
Hund28390 Selenicereus undatus HOM05D005015 ORTHO05D005696 9.7e-65 250.4 182 75.3
Hund28502 Selenicereus undatus HOM05D005015 ORTHO05D005696 9.7e-65 250.4 182 75.3
Hund28650 Selenicereus undatus HOM05D005015 ORTHO05D005696 9.7e-65 250.4 182 75.3
Hund28906 Selenicereus undatus HOM05D005015 ORTHO05D005696 9.7e-65 250.4 182 75.3
Hund29887 Selenicereus undatus HOM05D005015 ORTHO05D005696 9.7e-65 250.4 182 75.3
Hund30205 Selenicereus undatus HOM05D005015 ORTHO05D005696 9.7e-65 250.4 182 75.3
Hund30312 Selenicereus undatus HOM05D005015 ORTHO05D005696 9.7e-65 250.4 182 75.3
Hund30436 Selenicereus undatus HOM05D005015 ORTHO05D005696 9.7e-65 250.4 182 75.3
Hund30665 Selenicereus undatus HOM05D005015 ORTHO05D005696 9.7e-65 250.4 182 75.3
Hund31017 Selenicereus undatus HOM05D005015 ORTHO05D005696 9.7e-65 250.4 182 75.3
EL10As12g24014 Beta vulgaris HOM05D000743 ORTHO05D000580 3.7e-64 248.4 172 77.9
BolSC45t60933H Brassica oleracea HOM05D005015 ORTHO05D005696 1.8e-63 246.1 198 70.7
Peaxi162Scf00379g00087 Petunia axillaris HOM05D005015 ORTHO05D005696 1.6e-62 243.0 229 62.0
Peaxi162Scf00211g00235 Petunia axillaris HOM05D000743 ORTHO05D005696 2.3e-58 229.2 188 69.7
BraSC179t45790Z Brassica rapa HOM05D005015 ORTHO05D005696 2.2e-56 222.6 187 69.0
HanXRQChr00c0313g0573431 Helianthus annuus HOM05D000743 ORTHO05D000580 2.4e-55 219.2 156 76.3
HanXRQChr04g0120711 Helianthus annuus HOM05D000743 ORTHO05D000580 2.4e-55 219.2 156 76.3
HanXRQChr08g0210221 Helianthus annuus HOM05D000743 ORTHO05D000580 2.4e-55 219.2 156 76.3
HanXRQChr11g0326651 Helianthus annuus HOM05D000743 ORTHO05D000580 2.4e-55 219.2 156 76.3
HanXRQCPg0579841 Helianthus annuus HOM05D000743 ORTHO05D000580 2.4e-55 219.2 156 76.3
Hma1.2p1_2181F.1_g316260 Hydrangea macrophylla HOM05D005015 ORTHO05D005696 4.4e-49 198.4 114 91.2
Hma1.2p1_2181F.1_g316275 Hydrangea macrophylla HOM05D005015 ORTHO05D005696 4.4e-49 198.4 114 91.2
Cpa.g.sc30.79 Carica papaya HOM05D005015 ORTHO05D005696 5.7e-49 198.0 115 89.6
BNapus_Darmor_BZH_scaffold_253p00020 Brassica napus HOM05D005015 ORTHO05D005696 8.3e-48 194.1 115 87.0
Gohir.A10G065880 Gossypium hirsutum HOM05D005015 ORTHO05D005696 4.1e-47 191.8 165 67.9
Ah.10g027770 Amaranthus hybridus HOM05D005015 ORTHO05D005696 7.0e-47 191.0 115 87.0
TWI34G0268 Tripterygium wilfordii HOM05D005015 ORTHO05D005696 2.3e-45 186.0 115 87.0
Gohir.A11G101400 Gossypium hirsutum HOM05D005015 ORTHO05D005696 6.6e-45 184.5 115 86.1
CAN.G386.8 Capsicum annuum HOM05D000216 ORTHO05D001131 1.5e-44 183.3 123 79.7
Lalb_Chr03g0042651 Lupinus albus HOM05D005015 ORTHO05D005696 1.9e-44 183.0 115 85.2
Glyma.12G231900 Glycine max HOM05D005015 ORTHO05D005696 4.3e-44 181.8 111 85.6
CAN.G612.5 Capsicum annuum HOM05D005015 ORTHO05D005696 1.2e-43 180.3 115 82.6
CAN.G1648.11 Capsicum annuum HOM05D000216 ORTHO05D005696 3.6e-43 178.7 123 79.7
Hund10285 Selenicereus undatus HOM05D005015 ORTHO05D005696 3.6e-43 178.7 115 83.5
Hund30552 Selenicereus undatus HOM05D005015 ORTHO05D005696 3.6e-43 178.7 115 83.5
Hund30554 Selenicereus undatus HOM05D005015 ORTHO05D005696 3.6e-43 178.7 115 83.5
Eucgr.H02991 Eucalyptus grandis HOM05D005015 ORTHO05D005696 4.7e-43 178.3 122 80.3
Gohir.D03G128101 Gossypium hirsutum HOM05D005015 ORTHO05D005696 8.0e-43 177.6 120 80.8
arahy.Tifrunner.gnm1.ann1.6U43FV Arachis hypogaea HOM05D005015 ORTHO05D005696 2.3e-42 176.0 105 88.6
Gorai.003G134800 Gossypium raimondii HOM05D005015 ORTHO05D005696 4.0e-42 175.3 115 83.5
Lalb_Chr08g0232621 Lupinus albus HOM05D005015 ORTHO05D005696 4.0e-42 175.3 135 71.9
Lj2C1239T52 Lonicera japonica HOM05D005015 ORTHO05D005696 8.9e-42 174.1 115 81.7
Gohir.A05G314033 Gossypium hirsutum HOM05D005015 ORTHO05D005696 2.0e-41 172.9 106 87.7
SabraPtG0000800 Salix brachista HOM05D000743 ORTHO05D000580 1.3e-40 170.2 103 87.4
Nitab4.5_0027992g0020 Nicotiana tabacum HOM05D005015 ORTHO05D005696 1.7e-40 169.9 103 86.4
arahy.Tifrunner.gnm1.ann1.VXR7WZ Arachis hypogaea HOM05D005015 ORTHO05D005696 2.2e-40 169.5 112 79.5
Nitab4.5_0005637g0090 Nicotiana tabacum HOM05D005015 ORTHO05D005696 8.3e-40 167.5 105 84.8
HanXRQChr00c0272g0573041 Helianthus annuus HOM05D005015 ORTHO05D005696 1.1e-39 167.2 115 77.4
Psat0s2754g0200 Pisum sativum HOM05D000743 ORTHO05D000580 5.4e-39 164.9 104 85.6
Psat1g003840 Pisum sativum HOM05D000743 ORTHO05D000580 5.4e-39 164.9 104 85.6
Psat6g219360 Pisum sativum HOM05D000743 ORTHO05D000580 5.4e-39 164.9 104 85.6
BraSC143t45677Z Brassica rapa HOM05D005015 ORTHO05D005696 7.0e-39 164.5 141 64.5
BraSC25t45885Z Brassica rapa HOM05D005015 ORTHO05D005696 9.2e-39 164.1 96 86.5
HanXRQChr00c0300g0573221 Helianthus annuus HOM05D005015 ORTHO05D005696 1.6e-38 163.3 101 83.2
Nitab4.5_0000435g0090 Nicotiana tabacum HOM05D005015 ORTHO05D005696 2.7e-38 162.5 98 85.7
Medtr1g109420 Medicago truncatula HOM05D005015 ORTHO05D005696 3.5e-38 162.2 99 85.9
Medtr0002s0540 Medicago truncatula HOM05D005015 ORTHO05D005696 7.8e-38 161.0 110 74.5
BolSC49t61201H Brassica oleracea HOM05D005015 ORTHO05D005696 1.7e-37 159.8 133 66.2
BraSC58t46477Z Brassica rapa HOM05D005015 ORTHO05D005696 1.7e-37 159.8 92 87.0
arahy.Tifrunner.gnm1.ann1.XNS64L Arachis hypogaea HOM05D001387 ORTHO05D005696 6.6e-37 157.9 103 81.6
Psat0s1586g0080 Pisum sativum HOM05D000743 ORTHO05D000580 1.6e-35 153.3 104 82.7
Psat0s2288g0080 Pisum sativum HOM05D000743 ORTHO05D000580 2.8e-35 152.5 133 68.4
MELO3C000827.2 Cucumis melo HOM05D005015 ORTHO05D005696 1.1e-34 150.6 83 97.6
MELO3C027845.2 Cucumis melo HOM05D005015 ORTHO05D005696 1.1e-34 150.6 83 97.6
Duzib147G0859 Durio zibethinus HOM05D004473 ORTHO05D005696 1.1e-34 150.6 90 86.7
Solyc10g044535.1 Solanum lycopersicum HOM05D005015 ORTHO05D005696 2.0e-33 146.4 167 53.9
HanXRQChr10g0282491 Helianthus annuus HOM05D000743 ORTHO05D000580 3.4e-33 145.6 90 85.6
Solyc02g012020.3 Solanum lycopersicum HOM05D005015 ORTHO05D005696 4.9e-32 141.7 152 55.3
arahy.Tifrunner.gnm1.ann1.MI951N Arachis hypogaea HOM05D005015 ORTHO05D005696 1.5e-28 130.2 111 65.8
Gohir.D10G206350 Gossypium hirsutum HOM05D005015 ORTHO05D005696 1.6e-27 126.7 130 58.5
SEGI_04828 Sequoiadendron giganteum HOM05D005015 ORTHO05D005696 8.1e-27 124.4 114 60.5
SEGI_35208 Sequoiadendron giganteum HOM05D005015 ORTHO05D005696 8.1e-27 124.4 114 60.5
Peaxi162Scf00027g00003 Petunia axillaris HOM05D005015 ORTHO05D005696 4.4e-25 118.6 73 87.7
Lj1P433T25 Lonicera japonica HOM05D005015 ORTHO05D005696 1.7e-24 116.7 73 83.6
Gohir.A07G129651 Gossypium hirsutum HOM05D005015 ORTHO05D005696 1.9e-23 113.2 66 90.9
Gorai.011G231900 Gossypium raimondii HOM05D005015 ORTHO05D005696 1.9e-23 113.2 99 62.6
Migut.D01410 Erythranthe guttata HOM05D005015 ORTHO05D005696 2.4e-23 112.8 144 47.9
Gohir.D05G292450 Gossypium hirsutum HOM05D005015 ORTHO05D005696 7.1e-23 111.3 77 80.5
Gohir.A07G153850 Gossypium hirsutum HOM05D005015 ORTHO05D005696 1.6e-22 110.2 68 88.2
Gorai.009G308800 Gossypium raimondii HOM05D005015 ORTHO05D005696 2.7e-22 109.4 76 80.3
Medtr4g071050 Medicago truncatula HOM05D005015 ORTHO05D005696 1.7e-21 106.7 73 78.1
Atru.chr7.976 Acer truncatum HOM05D005015 ORTHO05D005696 5.1e-21 105.1 68 80.9
HanXRQChr00c0746g0577131 Helianthus annuus HOM05D005015 ORTHO05D005696 1.1e-20 104.0 98 59.2
Gorai.002G106400 Gossypium raimondii HOM05D005015 ORTHO05D005696 3.3e-20 102.4 76 72.4
HanXRQChr04g0099301 Helianthus annuus HOM05D005015 ORTHO05D005696 4.3e-20 102.1 67 79.1
SMO086G0010 Selaginella moellendorffii HOM05D005015 ORTHO05D005696 4.3e-20 102.1 188 36.7
BolC2t10574H Brassica oleracea HOM05D005015 ORTHO05D005696 7.3e-20 101.3 61 85.2
Gohir.A10G154675 Gossypium hirsutum HOM05D005015 ORTHO05D005696 9.5e-20 100.9 80 72.5
Gorai.011G122900 Gossypium raimondii HOM05D005015 ORTHO05D005696 2.8e-19 99.4 88 64.8
Solyc07g021380.1 Solanum lycopersicum HOM05D005015 ORTHO05D005696 1.4e-18 97.1 74 74.3
A03p46590 Brassica napus HOM05D005015 ORTHO05D005696 3.1e-18 95.9 54 87.0
Sc09g0006540 Simmondsia chinensis HOM05D005573 ORTHO05D005696 4.0e-18 95.5 81 64.2
MD08G1060700 Malus domestica HOM05D005015 ORTHO05D005696 8.9e-18 94.4 61 78.7
PSO548G0131 Papaver somniferum HOM05D005015 ORTHO05D005696 8.9e-18 94.4 47 93.6
BolSC29t60447H Brassica oleracea HOM05D005015 ORTHO05D005696 1.2e-17 94.0 94 56.4
Migut.D01335 Erythranthe guttata HOM05D005015 ORTHO05D005696 5.8e-17 91.7 47 89.4
Gohir.D06G126233 Gossypium hirsutum HOM05D005015 ORTHO05D005696 5.8e-17 91.7 57 84.2
Lsat_1_v5_gn_3_117960 Lactuca sativa HOM05D005015 ORTHO05D005696 5.8e-17 91.7 60 83.3
MD16G1272100 Malus domestica HOM05D005015 ORTHO05D005696 3.8e-16 89.0 46 91.3
Hma1.2p1_0414F.1_g147700 Hydrangea macrophylla HOM05D005015 ORTHO05D005696 4.9e-16 88.6 47 87.2
Gohir.D01G157951 Gossypium hirsutum HOM05D005015 ORTHO05D005696 6.4e-16 88.2 47 87.2
Gorai.010G147200 Gossypium raimondii HOM05D005015 ORTHO05D005696 1.9e-15 86.7 55 81.8
Gohir.A10G201450 Gossypium hirsutum HOM05D005015 ORTHO05D005696 4.2e-15 85.5 47 87.2
TPR.G15298 Trifolium pratense HOM05D005015 ORTHO05D005696 5.4e-15 85.1 61 75.4
Lalb_Chr09g0335321 Lupinus albus HOM05D005015 ORTHO05D005696 7.1e-15 84.7 49 81.6
BraSC140t45611Z Brassica rapa HOM05D005015 ORTHO05D005696 1.2e-14 84.0 90 54.4
BraSC151t45691Z Brassica rapa HOM05D005015 ORTHO05D005696 1.2e-14 84.0 46 84.8
Lalb_Chr07g0191421 Lupinus albus HOM05D005015 ORTHO05D005696 6.0e-14 81.6 49 77.6
Nn020s41497 Nelumbo nucifera HOM05D005015 ORTHO05D005696 3.0e-13 79.3 47 85.1
BolSC44t60844H Brassica oleracea HOM05D005015 ORTHO05D005696 5.6e-12 75.1 47 83.0
SEGI_03619 Sequoiadendron giganteum HOM05D000806 ORTHO05D002324 5.6e-12 75.1 64 64.1
Lalb_Chr07g0192191 Lupinus albus HOM05D005015 ORTHO05D005696 7.3e-12 74.7 49 75.5
Gorai.011G235400 Gossypium raimondii HOM05D005015 ORTHO05D005696 9.6e-12 74.3 48 83.3
Gohir.D10G209550 Gossypium hirsutum HOM05D005015 ORTHO05D005696 2.1e-11 73.2 48 81.2
Nitab4.5_0003775g0050 Nicotiana tabacum HOM05D005015 ORTHO05D005696 8.1e-11 71.2 41 85.4
EL10Ac5g12103 Beta vulgaris HOM05D005015 ORTHO05D005696 2.4e-10 69.7 43 81.4
CsaV3_UNG207830 Cucumis sativus L. HOM05D000216 ORTHO05D003638 3.1e-10 69.3 37 97.3
Nn1g01955 Nelumbo nucifera HOM05D005015 ORTHO05D005696 1.5e-09 67.0 38 86.8
Nn2g15007 Nelumbo nucifera HOM05D005015 ORTHO05D005696 1.5e-09 67.0 38 86.8
Gorai.004G111300 Gossypium raimondii HOM05D000743 ORTHO05D000580 2.6e-09 66.2 83 51.8
Lj2C1238T11 Lonicera japonica HOM05D000743 ORTHO05D000580 4.4e-09 65.5 46 76.1


User provided reference genes

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