Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0007870 Sechium edule HOM05D000003 ORTHO05D000167 5.5e-98 360.9 176 100.0
Sed0025544 Sechium edule HOM05D000003 ORTHO05D000167 2.0e-84 315.8 174 87.4
Sed0019631 Sechium edule HOM05D000003 ORTHO05D000167 1.4e-64 250.0 175 72.0
Sed0009227 Sechium edule HOM05D000003 ORTHO05D000167 4.7e-41 171.8 104 87.5
Sed0001005 Sechium edule HOM05D015284 ORTHO05D000167 1.2e-31 140.6 87 87.4
Sed0026194 Sechium edule HOM05D000003 ORTHO05D000167 7.6e-31 137.9 182 38.5
Sed0005170 Sechium edule HOM05D000003 ORTHO05D000167 4.9e-22 108.6 156 34.6
Sed0025910 Sechium edule HOM05D000003 ORTHO05D000167 1.5e-18 97.1 143 36.4
Sed0021352 Sechium edule HOM05D000003 ORTHO05D000167 1.3e-17 94.0 172 31.4
Sed0016145 Sechium edule HOM05D000003 ORTHO05D000004 3.1e-16 89.4 156 32.7
Sed0017704 Sechium edule HOM05D000003 ORTHO05D000167 6.9e-16 88.2 151 36.4
Sed0005803 Sechium edule HOM05D000003 ORTHO05D000167 1.5e-15 87.0 97 42.3
Sed0010381 Sechium edule HOM05D000003 ORTHO05D000004 1.5e-15 87.0 129 34.1
Sed0008661 Sechium edule HOM05D000003 ORTHO05D000167 1.3e-14 84.0 180 28.9
Sed0028005 Sechium edule HOM05D000003 ORTHO05D000167 2.9e-14 82.8 136 32.4
Sed0011524 Sechium edule HOM05D000003 ORTHO05D000167 1.1e-13 80.9 107 40.2
Sed0001376 Sechium edule HOM05D000003 ORTHO05D000167 9.3e-13 77.8 140 32.9
Sed0008336 Sechium edule HOM05D000003 ORTHO05D000004 1.6e-12 77.0 128 32.8
RcHm_v2.0_Chr4g0402201 Rosa chinensis HOM05D000003 ORTHO05D000004 3.5e-12 75.9 175 29.7
QL08p050440 Quercus lobata HOM05D000003 ORTHO05D000167 2.3e-11 73.2 107 39.3
Sed0023716 Sechium edule HOM05D000003 ORTHO05D000167 3.0e-11 72.8 103 36.9
Atru.chr10.1536 Acer truncatum HOM05D000003 ORTHO05D000167 5.1e-11 72.0 167 28.1
Duzib170G1100 Durio zibethinus HOM05D000003 ORTHO05D000167 1.5e-10 70.5 137 32.1
Sed0004185 Sechium edule HOM05D000003 ORTHO05D000004 1.5e-10 70.5 130 36.9
Atru.chr2.108 Acer truncatum HOM05D000003 ORTHO05D000004 1.9e-10 70.1 172 25.6
Atru.chr2.2135 Acer truncatum HOM05D000003 ORTHO05D000004 2.5e-10 69.7 164 26.8
Atru.chr4.1214 Acer truncatum HOM05D000003 ORTHO05D000167 2.5e-10 69.7 165 28.5
CANSAT01G1765 Cannabis sativa HOM05D000003 ORTHO05D000167 2.5e-10 69.7 175 23.4
Atru.chr10.298 Acer truncatum HOM05D000003 ORTHO05D000004 3.3e-10 69.3 168 29.8
Atru.chr10.544 Acer truncatum HOM05D000003 ORTHO05D000004 3.3e-10 69.3 163 27.0
Sed0016476 Sechium edule HOM05D024375 ORTHO05D000167 3.3e-10 69.3 108 38.0
Atru.chr12.1232 Acer truncatum HOM05D000003 ORTHO05D000167 4.3e-10 68.9 173 28.9
FAN09G3474 Fragaria x ananassa HOM05D000003 ORTHO05D006737 5.6e-10 68.6 174 27.6
Atru.chr2.2733 Acer truncatum HOM05D000003 ORTHO05D000167 7.4e-10 68.2 164 26.8
FvH4_5g06193 Fragaria vesca HOM05D000003 ORTHO05D015112 7.4e-10 68.2 172 25.6
Prupe.3G063400 Prunus persica HOM05D000003 ORTHO05D000167 7.4e-10 68.2 112 34.8
Sed0022157 Sechium edule HOM05D000003 ORTHO05D000167 7.4e-10 68.2 175 26.9
Atru.chr13.1294 Acer truncatum HOM05D000003 ORTHO05D000167 9.6e-10 67.8 159 28.3
Ciclev10007098m.g Citrus clementina HOM05D000003 ORTHO05D000167 9.6e-10 67.8 98 39.8
Atru.chr8.96 Acer truncatum HOM05D000003 ORTHO05D000167 1.3e-09 67.4 168 28.6
FvH4_2g20801 Fragaria vesca HOM05D008097 ORTHO05D000167 1.3e-09 67.4 162 32.7
Atru.chr7.130 Acer truncatum HOM05D000003 ORTHO05D000126 1.6e-09 67.0 172 27.3
Sed0009616 Sechium edule HOM05D015284 ORTHO05D000167 1.6e-09 67.0 105 34.3
FvH4_2g00211 Fragaria vesca HOM05D000003 ORTHO05D006737 2.8e-09 66.2 173 25.4
Atru.chr11.542 Acer truncatum HOM05D000003 ORTHO05D000167 3.7e-09 65.9 163 29.4
Sed0017531 Sechium edule HOM05D000003 ORTHO05D000126 3.7e-09 65.9 177 29.9
Sed0019207 Sechium edule HOM05D000003 ORTHO05D000167 3.7e-09 65.9 104 31.7
Atru.chr4.686 Acer truncatum HOM05D000003 ORTHO05D000126 4.8e-09 65.5 165 29.7
Atru.chr8.816 Acer truncatum HOM05D000003 ORTHO05D000004 4.8e-09 65.5 169 29.0
Sed0005147 Sechium edule HOM05D015284 ORTHO05D000167 4.8e-09 65.5 184 27.2
Atru.chr12.386 Acer truncatum HOM05D000003 ORTHO05D000004 6.2e-09 65.1 140 30.0
Atru.chr13.1037 Acer truncatum HOM05D000003 ORTHO05D000167 6.2e-09 65.1 171 26.9
Sed0009635 Sechium edule HOM05D015284 ORTHO05D000167 6.2e-09 65.1 77 39.0
Atru.chr3.1768 Acer truncatum HOM05D000003 ORTHO05D000167 8.1e-09 64.7 164 29.3
Dinv14511 Davidia involucrata HOM05D002972 ORTHO05D002272 8.1e-09 64.7 154 25.3
QL03p066006 Quercus lobata HOM05D001020 ORTHO05D014173 8.1e-09 64.7 112 29.5
Sed0015376 Sechium edule HOM05D000003 ORTHO05D000167 8.1e-09 64.7 111 31.5
Atru.chr1.3159 Acer truncatum HOM05D000003 ORTHO05D000167 1.1e-08 64.3 170 27.1
Atru.chr4.2116 Acer truncatum HOM05D000003 ORTHO05D000004 1.1e-08 64.3 146 25.3
QL12p001149 Quercus lobata HOM05D000003 ORTHO05D000167 1.1e-08 64.3 114 29.8
QL93p0138_0008 Quercus lobata HOM05D000003 ORTHO05D000167 1.4e-08 63.9 173 27.7
EL10Ac8g18252 Beta vulgaris HOM05D000003 ORTHO05D000004 2.4e-08 63.2 167 25.7
Sed0015769 Sechium edule HOM05D000003 ORTHO05D000004 2.4e-08 63.2 166 28.9
Sed0023448 Sechium edule HOM05D015284 ORTHO05D000167 2.4e-08 63.2 118 33.1
Atru.chr1.3779 Acer truncatum HOM05D000003 ORTHO05D000167 3.1e-08 62.8 163 27.6
Atru.chr10.535 Acer truncatum HOM05D000003 ORTHO05D000004 3.1e-08 62.8 107 30.8
EL10Ac9g22665 Beta vulgaris HOM05D000003 ORTHO05D000167 3.1e-08 62.8 115 33.0
Haze_13874 Corylus avellana HOM05D016406 ORTHO05D000167 3.1e-08 62.8 104 31.7
QL10p011272 Quercus lobata HOM05D000003 ORTHO05D000167 3.1e-08 62.8 163 28.2
RcHm_v2.0_Chr3g0486981 Rosa chinensis HOM05D000003 ORTHO05D006737 3.1e-08 62.8 159 25.8
Atru.chr1.2556 Acer truncatum HOM05D000003 ORTHO05D000004 5.3e-08 62.0 165 26.7
Atru.chr2.176 Acer truncatum HOM05D000003 ORTHO05D000167 5.3e-08 62.0 174 28.7
RcHm_v2.0_Chr6g0286611 Rosa chinensis HOM05D000003 ORTHO05D006737 5.3e-08 62.0 151 26.5
Sed0016108 Sechium edule HOM05D015284 ORTHO05D000167 5.3e-08 62.0 152 28.9
Atru.chr1.1940 Acer truncatum HOM05D000003 ORTHO05D000004 6.9e-08 61.6 164 26.8
Atru.chr2.931 Acer truncatum HOM05D000003 ORTHO05D000004 6.9e-08 61.6 168 25.6
Atru.chr6.885 Acer truncatum HOM05D000003 ORTHO05D000167 6.9e-08 61.6 165 25.5
EL10Ac6g13992 Beta vulgaris HOM05D000003 ORTHO05D000004 6.9e-08 61.6 172 25.6
QL04p064882 Quercus lobata HOM05D000003 ORTHO05D000167 6.9e-08 61.6 112 28.6
QL93p0215_0031 Quercus lobata HOM05D000003 ORTHO05D000167 6.9e-08 61.6 112 28.6
Atru.chr13.1676 Acer truncatum HOM05D000003 ORTHO05D000006 9.0e-08 61.2 169 27.2
Atru.chr2.1340 Acer truncatum HOM05D000003 ORTHO05D000167 9.0e-08 61.2 166 24.7
Atru.chr5.2472 Acer truncatum HOM05D000003 ORTHO05D000004 9.0e-08 61.2 172 23.8
QL11p036979 Quercus lobata HOM05D000003 ORTHO05D000167 9.0e-08 61.2 151 27.2
Sed0006726 Sechium edule HOM05D000003 ORTHO05D000167 9.0e-08 61.2 177 28.8
Atru.chr5.1534 Acer truncatum HOM05D000003 ORTHO05D000167 1.2e-07 60.8 97 36.1
Atru.chr9.679 Acer truncatum HOM05D000003 ORTHO05D000167 1.2e-07 60.8 166 24.7
Atru.ctg24.6 Acer truncatum HOM05D000003 ORTHO05D000004 1.2e-07 60.8 163 28.2
COL.COLO4_35519 Corchorus olitorius HOM05D009774 ORTHO05D000167 1.2e-07 60.8 172 25.6
CANSAT64G2879 Cannabis sativa HOM05D000003 ORTHO05D000004 1.5e-07 60.5 172 25.0
CANSAT78G1794 Cannabis sativa HOM05D000003 ORTHO05D000004 1.5e-07 60.5 199 25.1
Gorai.001G187600 Gossypium raimondii HOM05D016941 ORTHO05D019244 1.5e-07 60.5 166 29.5
QL02p082090 Quercus lobata HOM05D000003 ORTHO05D000167 1.5e-07 60.5 110 31.8
QL07p038559 Quercus lobata HOM05D000003 ORTHO05D000167 1.5e-07 60.5 165 26.7
Sed0002454 Sechium edule HOM05D000003 ORTHO05D000167 1.5e-07 60.5 86 34.9
Atru.chr1.2640 Acer truncatum HOM05D000003 ORTHO05D000126 2.0e-07 60.1 109 30.3
QL11p009033 Quercus lobata HOM05D000003 ORTHO05D000004 2.0e-07 60.1 164 25.6
Sed0010684 Sechium edule HOM05D000003 ORTHO05D000167 2.0e-07 60.1 141 29.1
QL04p069059 Quercus lobata HOM05D000003 ORTHO05D000167 2.6e-07 59.7 104 28.8
Atru.chr2.2391 Acer truncatum HOM05D000003 ORTHO05D000167 3.4e-07 59.3 102 35.3
Atru.chr4.1218 Acer truncatum HOM05D000003 ORTHO05D000167 3.4e-07 59.3 173 26.0
EL10Ac1g02112 Beta vulgaris HOM05D000003 ORTHO05D000006 3.4e-07 59.3 164 27.4
Dinv08495 Davidia involucrata HOM05D000003 ORTHO05D000167 3.4e-07 59.3 106 30.2
QL11p039844 Quercus lobata HOM05D000003 ORTHO05D011877 3.4e-07 59.3 151 25.8
QL11p050659 Quercus lobata HOM05D002097 ORTHO05D002248 3.4e-07 59.3 106 34.0
Sed0027684 Sechium edule HOM05D000003 ORTHO05D000167 3.4e-07 59.3 86 34.9
Atru.chr5.1709 Acer truncatum HOM05D000003 ORTHO05D000167 4.5e-07 58.9 168 22.6
Cc00_g21050 Coffea canephora HOM05D000155 ORTHO05D000022 4.5e-07 58.9 182 24.2
Cc00_g24940 Coffea canephora HOM05D000155 ORTHO05D000022 4.5e-07 58.9 182 24.2
Cc06_g22510 Coffea canephora HOM05D000155 ORTHO05D000022 4.5e-07 58.9 182 24.2
Dinv21289 Davidia involucrata HOM05D000079 ORTHO05D000211 4.5e-07 58.9 105 30.5
Sed0019957 Sechium edule HOM05D000003 ORTHO05D000004 4.5e-07 58.9 166 28.3
EL10Ac6g13741 Beta vulgaris HOM05D008685 ORTHO05D000022 5.8e-07 58.5 170 27.6
CANSAT11G0139 Cannabis sativa HOM05D000003 ORTHO05D000167 5.8e-07 58.5 162 23.5
Prupe.7G049300 Prunus persica HOM05D000003 ORTHO05D000004 7.6e-07 58.2 86 36.0
Atru.chr13.1818 Acer truncatum HOM05D000003 ORTHO05D000004 9.9e-07 57.8 163 23.9
Atru.chr8.838 Acer truncatum HOM05D000003 ORTHO05D000167 9.9e-07 57.8 113 31.0
Ciclev10013872m.g Citrus clementina HOM05D000003 ORTHO05D000167 9.9e-07 57.8 113 27.4
QL05p038991 Quercus lobata HOM05D000003 ORTHO05D000167 9.9e-07 57.8 119 27.7
QL05p042365 Quercus lobata HOM05D000003 ORTHO05D000167 9.9e-07 57.8 165 25.5
Sed0016831 Sechium edule HOM05D015284 ORTHO05D000167 9.9e-07 57.8 68 39.7
Atru.chr10.114 Acer truncatum HOM05D000003 ORTHO05D000167 1.3e-06 57.4 173 25.4
Atru.chr10.97 Acer truncatum HOM05D000003 ORTHO05D000167 1.3e-06 57.4 173 25.4
Atru.chr6.1288 Acer truncatum HOM05D000003 ORTHO05D000004 1.3e-06 57.4 112 33.0
Atru.chr8.605 Acer truncatum HOM05D000003 ORTHO05D000167 1.7e-06 57.0 167 24.6
Atru.chr8.965 Acer truncatum HOM05D000003 ORTHO05D000167 1.7e-06 57.0 163 25.2
Atru.chr9.1174 Acer truncatum HOM05D000003 ORTHO05D000004 1.7e-06 57.0 163 26.4
FvH4_3g05211 Fragaria vesca HOM05D000003 ORTHO05D000022 1.7e-06 57.0 113 28.3
Prupe.4G143500 Prunus persica HOM05D000003 ORTHO05D000167 1.7e-06 57.0 77 39.0
QL05p060814 Quercus lobata HOM05D000003 ORTHO05D000167 1.7e-06 57.0 111 30.6
RcHm_v2.0_Chr1g0344421 Rosa chinensis HOM05D000003 ORTHO05D006737 1.7e-06 57.0 163 23.3
Atru.chr12.998 Acer truncatum HOM05D000003 ORTHO05D000167 2.2e-06 56.6 138 26.1
Atru.chr5.1665 Acer truncatum HOM05D000003 ORTHO05D000167 2.2e-06 56.6 169 24.9
FvH4_4g01552 Fragaria vesca HOM05D000003 ORTHO05D006737 2.2e-06 56.6 121 28.1
FAN24G1917 Fragaria x ananassa HOM05D000011 ORTHO05D000157 2.2e-06 56.6 176 24.4
QL06p046108 Quercus lobata HOM05D028670 ORTHO05D000167 2.2e-06 56.6 175 25.1
Atru.chr11.994 Acer truncatum HOM05D000003 ORTHO05D000167 2.9e-06 56.2 101 29.7
Atru.chr13.2083 Acer truncatum HOM05D000003 ORTHO05D000006 2.9e-06 56.2 165 23.0
QL04p056296 Quercus lobata HOM05D000003 ORTHO05D000004 2.9e-06 56.2 90 34.4
Atru.chr9.643 Acer truncatum HOM05D000003 ORTHO05D000167 3.8e-06 55.8 168 22.0
Atru.chr9.909 Acer truncatum HOM05D000003 ORTHO05D000004 3.8e-06 55.8 169 26.0
EL10Ac9g21339 Beta vulgaris HOM05D000003 ORTHO05D000167 3.8e-06 55.8 180 26.1
CANSAT35G0312 Cannabis sativa HOM05D000003 ORTHO05D000167 3.8e-06 55.8 177 26.6
Ciclev10010478m.g Citrus clementina HOM05D000003 ORTHO05D000167 3.8e-06 55.8 167 25.1
Ciclev10027161m.g Citrus clementina HOM05D000003 ORTHO05D000167 3.8e-06 55.8 101 29.7
QL10p056321 Quercus lobata HOM05D000003 ORTHO05D000167 3.8e-06 55.8 165 24.2
Atru.chr10.239 Acer truncatum HOM05D000003 ORTHO05D000167 4.9e-06 55.5 177 24.3
Atru.chr5.1622 Acer truncatum HOM05D000003 ORTHO05D000004 4.9e-06 55.5 174 23.6
CANSAT11G0573 Cannabis sativa HOM05D000003 ORTHO05D000167 4.9e-06 55.5 163 23.9
CANSAT21G0052 Cannabis sativa HOM05D000003 ORTHO05D000004 4.9e-06 55.5 150 25.3
Atru.chr11.235 Acer truncatum HOM05D000003 ORTHO05D000167 6.4e-06 55.1 103 29.1
Duzib205G1150 Durio zibethinus HOM05D000003 ORTHO05D000167 6.4e-06 55.1 136 24.3
QL01p014938 Quercus lobata HOM05D000003 ORTHO05D000167 6.4e-06 55.1 109 30.3
QL08p011385 Quercus lobata HOM05D000003 ORTHO05D000167 6.4e-06 55.1 101 34.7
QL11p020651 Quercus lobata HOM05D000003 ORTHO05D000167 6.4e-06 55.1 98 30.6
RcHm_v2.0_Chr1g0328181 Rosa chinensis HOM05D000003 ORTHO05D000004 6.4e-06 55.1 162 25.3
RcHm_v2.0_Chr5g0040041 Rosa chinensis HOM05D000003 ORTHO05D006737 6.4e-06 55.1 136 22.8
TWI12G0720 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 6.4e-06 55.1 171 25.7
Atru.chr12.1749 Acer truncatum HOM05D000003 ORTHO05D000167 8.4e-06 54.7 138 28.3
Atru.chr13.1583 Acer truncatum HOM05D000003 ORTHO05D000167 8.4e-06 54.7 146 26.0
Atru.chr4.1036 Acer truncatum HOM05D000003 ORTHO05D000167 8.4e-06 54.7 137 25.5
Atru.chr9.146 Acer truncatum HOM05D000003 ORTHO05D000167 8.4e-06 54.7 104 31.7
BolC7t41032H Brassica oleracea HOM05D000003 ORTHO05D000004 8.4e-06 54.7 170 24.7
CANSAT11G1818 Cannabis sativa HOM05D000003 ORTHO05D000004 8.4e-06 54.7 185 22.7
AUR62008864 Chenopodium quinoa HOM05D000051 ORTHO05D000004 8.4e-06 54.7 84 33.3
AUR62015045 Chenopodium quinoa HOM05D000003 ORTHO05D000004 8.4e-06 54.7 115 28.7
Cc00_g15230 Coffea canephora HOM05D000155 ORTHO05D000022 8.4e-06 54.7 182 23.6
COL.COLO4_29577 Corchorus olitorius HOM05D000003 ORTHO05D000004 8.4e-06 54.7 167 26.3
FvH4_5g15581 Fragaria vesca HOM05D000003 ORTHO05D000022 8.4e-06 54.7 115 30.4
FAN11G0642 Fragaria x ananassa HOM05D000355 ORTHO05D000227 8.4e-06 54.7 160 25.0
MBI03_g12752_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 8.4e-06 54.7 110 35.5
QL10p030412 Quercus lobata HOM05D000003 ORTHO05D000167 8.4e-06 54.7 104 28.8
RcHm_v2.0_Chr5g0018821 Rosa chinensis HOM05D000003 ORTHO05D000022 8.4e-06 54.7 165 27.9
Sed0017730 Sechium edule HOM05D000003 ORTHO05D000004 8.4e-06 54.7 172 27.3


User provided reference genes

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