Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0007821 Sechium edule HOM05D000821 ORTHO05D005255 2.9e-16 87.8 56 100.0
MBI15_g07488_MAGBIO Magnolia biondii HOM05D000821 ORTHO05D005255 9.5e-12 72.8 36 91.7
TWI34G0974 Tripterygium wilfordii HOM05D000821 ORTHO05D000931 1.6e-11 72.0 35 91.4
CiPaw.15G163200 Carya illinoinensis HOM05D000821 ORTHO05D005255 2.1e-11 71.6 37 86.5
Haze_19064 Corylus avellana HOM05D000821 ORTHO05D005255 2.8e-11 71.2 37 86.5
Haze_19070 Corylus avellana HOM05D000821 ORTHO05D005255 2.8e-11 71.2 37 86.5
TAR383G0646 Trochodendron aralioides HOM05D000821 ORTHO05D005255 2.8e-11 71.2 36 88.9
GSVIVG01023708001 Vitis vinifera HOM05D000821 ORTHO05D005255 3.6e-11 70.9 36 88.9
Cpa.g.sc718.1 Carica papaya HOM05D000821 ORTHO05D005255 4.7e-11 70.5 36 88.9
Hund26423 Selenicereus undatus HOM05D000821 ORTHO05D005255 4.7e-11 70.5 56 82.1
Aqoxy7G03268 Aquilegia oxysepala HOM05D000821 ORTHO05D005255 6.2e-11 70.1 36 88.9
Manes.14G114200 Manihot esculenta HOM05D000821 ORTHO05D005255 6.2e-11 70.1 36 88.9
Gohir.A05G007400 Gossypium hirsutum HOM05D000821 ORTHO05D005255 8.0e-11 69.7 36 86.1
Gohir.D05G008300 Gossypium hirsutum HOM05D000821 ORTHO05D005255 8.0e-11 69.7 36 86.1
PSO063G0195 Papaver somniferum HOM05D000821 ORTHO05D000931 8.0e-11 69.7 35 85.7
PSO782G4241 Papaver somniferum HOM05D000821 ORTHO05D000931 8.0e-11 69.7 35 85.7
Rhsim01G0021000 Rhododendron simsii HOM05D000821 ORTHO05D005255 8.0e-11 69.7 36 86.1
Thecc.09G155600 Theobroma cacao HOM05D000821 ORTHO05D005255 8.0e-11 69.7 36 86.1
Mapoly0001s0544 Marchantia polymorpha HOM05D000821 ORTHO05D005255 1.4e-10 68.9 36 77.8
Nn2g12502 Nelumbo nucifera HOM05D000821 ORTHO05D005255 1.8e-10 68.6 36 86.1
Potri.018G101400 Populus trichocarpa HOM05D000821 ORTHO05D005255 3.1e-10 67.8 36 86.1
ATR0580G204 Amborella trichopoda HOM05D000821 ORTHO05D005255 5.2e-10 67.0 35 85.7
Cfa010145 Carpinus fangiana HOM05D000821 ORTHO05D005255 5.2e-10 67.0 37 73.0
CiPaw.03G007300 Carya illinoinensis HOM05D000821 ORTHO05D005255 5.2e-10 67.0 35 82.9
Phvul.008G022200 Phaseolus vulgaris HOM05D000821 ORTHO05D005255 5.2e-10 67.0 35 82.9
Potri.004G106750 Populus trichocarpa HOM05D000821 ORTHO05D005255 5.2e-10 67.0 35 82.9
Atru.chr8.734 Acer truncatum HOM05D000821 ORTHO05D005255 6.8e-10 66.6 35 85.7
Actinidia24035 Actinidia chinensis HOM05D000821 ORTHO05D005255 6.8e-10 66.6 56 76.8
Cpa.g.sc70.17 Carica papaya HOM05D000821 ORTHO05D005255 6.8e-10 66.6 35 85.7
CDE07G0496 Ceratophyllum demersum HOM05D000821 ORTHO05D005255 6.8e-10 66.6 36 83.3
ClCG05G011880 Citrullus lanatus HOM05D000821 ORTHO05D005255 6.8e-10 66.6 35 85.7
Ciclev10013834m.g Citrus clementina HOM05D000821 ORTHO05D005255 6.8e-10 66.6 35 85.7
MELO3C023786.2 Cucumis melo HOM05D000821 ORTHO05D005255 6.8e-10 66.6 35 85.7
CsaV3_3G020550 Cucumis sativus L. HOM05D000821 ORTHO05D005255 6.8e-10 66.6 35 85.7
FAN02G3078 Fragaria x ananassa HOM05D000821 ORTHO05D005255 6.8e-10 66.6 35 85.7
FAN05G4080 Fragaria x ananassa HOM05D000821 ORTHO05D005255 6.8e-10 66.6 35 85.7
FAN09G0163 Fragaria x ananassa HOM05D000821 ORTHO05D005255 6.8e-10 66.6 35 85.7
FAN14G4322 Fragaria x ananassa HOM05D000821 ORTHO05D005255 6.8e-10 66.6 35 85.7
Gohir.D08G046400 Gossypium hirsutum HOM05D000821 ORTHO05D005255 6.8e-10 66.6 35 85.7
Lalb_Chr10g0099471 Lupinus albus HOM05D000821 ORTHO05D005255 6.8e-10 66.6 35 85.7
MD17G1070400 Malus domestica HOM05D000821 ORTHO05D005255 6.8e-10 66.6 35 85.7
Manes.02G063600 Manihot esculenta HOM05D000821 ORTHO05D005255 6.8e-10 66.6 35 85.7
Prupe.3G243800 Prunus persica HOM05D000821 ORTHO05D005255 6.8e-10 66.6 35 85.7
RcHm_v2.0_Chr2g0163951 Rosa chinensis HOM05D000821 ORTHO05D005255 6.8e-10 66.6 35 85.7
Sed0003314 Sechium edule HOM05D000821 ORTHO05D005255 6.8e-10 66.6 35 85.7
vmacro01279 Vaccinium macrocarpon HOM05D000821 ORTHO05D005255 6.8e-10 66.6 37 81.1
Gohir.A08G035700 Gossypium hirsutum HOM05D000821 ORTHO05D005255 8.9e-10 66.2 35 82.9
Potri.017G108901 Populus trichocarpa HOM05D000821 ORTHO05D005255 8.9e-10 66.2 35 82.9
CSS0024970 Camellia sinensis var. sinensis HOM05D000821 ORTHO05D005255 1.2e-09 65.9 37 81.1
CSS0036603 Camellia sinensis var. sinensis HOM05D000821 ORTHO05D005255 1.2e-09 65.9 37 81.1
Cc07_g04850 Coffea canephora HOM05D000821 ORTHO05D005255 1.2e-09 65.9 35 82.9
Glyma.08G255850 Glycine max HOM05D000821 ORTHO05D005255 1.2e-09 65.9 35 82.9
Lj1g0021287 Lotus japonicus HOM05D000821 ORTHO05D005255 1.2e-09 65.9 35 82.9
TWI32G0656 Tripterygium wilfordii HOM05D000821 ORTHO05D000931 1.2e-09 65.9 34 82.4
Haze_14083 Corylus avellana HOM05D000821 ORTHO05D005255 1.5e-09 65.5 35 80.0
Lalb_Chr04g0255261 Lupinus albus HOM05D000821 ORTHO05D005255 1.5e-09 65.5 35 82.9
MBI14_g04840_MAGBIO Magnolia biondii HOM05D000821 ORTHO05D005255 1.5e-09 65.5 35 82.9
MBI14_g36371_MAGBIO Magnolia biondii HOM05D000821 ORTHO05D005255 1.5e-09 65.5 35 82.9
arahy.Tifrunner.gnm1.ann1.8KG9MP Arachis hypogaea HOM05D000821 ORTHO05D005255 2.0e-09 65.1 35 82.9
CSS0041318 Camellia sinensis var. sinensis HOM05D000821 ORTHO05D005255 2.0e-09 65.1 35 82.9
Dinv27410 Davidia involucrata HOM05D000821 ORTHO05D005255 2.0e-09 65.1 35 82.9
Duzib150G0377 Durio zibethinus HOM05D000821 ORTHO05D000931 2.0e-09 65.1 35 80.0
Migut.H00559 Erythranthe guttata HOM05D000821 ORTHO05D005255 2.0e-09 65.1 35 82.9
Migut.L01129 Erythranthe guttata HOM05D000821 ORTHO05D005255 2.0e-09 65.1 35 80.0
Glyma.01G071400 Glycine max HOM05D000821 ORTHO05D005255 2.0e-09 65.1 35 82.9
Gohir.A03G108166 Gossypium hirsutum HOM05D000821 ORTHO05D005255 2.0e-09 65.1 35 82.9
Gohir.A13G095100 Gossypium hirsutum HOM05D000821 ORTHO05D005255 2.0e-09 65.1 35 82.9
Gohir.D02G133300 Gossypium hirsutum HOM05D000821 ORTHO05D005255 2.0e-09 65.1 35 82.9
Gohir.D13G089300 Gossypium hirsutum HOM05D000821 ORTHO05D005255 2.0e-09 65.1 35 82.9
Gorai.005G149200 Gossypium raimondii HOM05D000821 ORTHO05D005255 2.0e-09 65.1 35 82.9
Lju237C1T16 Lonicera japonica HOM05D000821 ORTHO05D005255 2.0e-09 65.1 35 82.9
Lalb_Chr17g0341711 Lupinus albus HOM05D000821 ORTHO05D005255 2.0e-09 65.1 35 82.9
MD09G1079900 Malus domestica HOM05D000821 ORTHO05D005255 2.0e-09 65.1 35 82.9
RcHm_v2.0_Chr4g0436751 Rosa chinensis HOM05D000821 ORTHO05D005255 2.0e-09 65.1 35 82.9
SGA_v2.0_scaffold14G06782 Striga asiatica HOM05D000821 ORTHO05D005255 2.0e-09 65.1 35 82.9
Thecc.02G316800 Theobroma cacao HOM05D000821 ORTHO05D005255 2.0e-09 65.1 35 82.9
Actinidia30172 Actinidia chinensis HOM05D000821 ORTHO05D005255 2.6e-09 64.7 37 81.1
arahy.Tifrunner.gnm1.ann1.5E9M75 Arachis hypogaea HOM05D000821 ORTHO05D005255 2.6e-09 64.7 35 80.0
arahy.Tifrunner.gnm1.ann1.R5A4WZ Arachis hypogaea HOM05D000821 ORTHO05D005255 2.6e-09 64.7 35 80.0
CAN.G184.34 Capsicum annuum HOM05D000821 ORTHO05D005255 2.6e-09 64.7 35 80.0
CiPaw.06G097100 Carya illinoinensis HOM05D000821 ORTHO05D005255 2.6e-09 64.7 35 82.9
Cc11_g11120 Coffea canephora HOM05D000821 ORTHO05D005255 2.6e-09 64.7 35 80.0
FvH4_4g28640 Fragaria vesca HOM05D000821 ORTHO05D005255 2.6e-09 64.7 35 80.0
Manes.14G094100 Manihot esculenta HOM05D000821 ORTHO05D005255 2.6e-09 64.7 35 80.0
Nitab4.5_0013699g0020 Nicotiana tabacum HOM05D000821 ORTHO05D005255 2.6e-09 64.7 35 80.0
Phvul.003G044300 Phaseolus vulgaris HOM05D000821 ORTHO05D005255 2.6e-09 64.7 35 80.0
Potri.010G133850 Populus trichocarpa HOM05D000821 ORTHO05D005255 2.6e-09 64.7 35 80.0
Prupe.1G299600 Prunus persica HOM05D000821 ORTHO05D005255 2.6e-09 64.7 35 80.0
RcHm_v2.0_Chr7g0221071 Rosa chinensis HOM05D000821 ORTHO05D005255 2.6e-09 64.7 35 82.9
Solyc05g010425.1 Solanum lycopersicum HOM05D000821 ORTHO05D005255 2.6e-09 64.7 35 80.0
vmacro05595 Vaccinium macrocarpon HOM05D000821 ORTHO05D005255 2.6e-09 64.7 35 80.0
Glyma.02G128100 Glycine max HOM05D000821 ORTHO05D005255 3.4e-09 64.3 35 82.9
Lj4C128G17 Lonicera japonica HOM05D000821 ORTHO05D005255 3.4e-09 64.3 35 82.9
Zm00001eb313410 Zea mays HOM05D000821 ORTHO05D005255 3.4e-09 64.3 35 80.0
Dinv33898 Davidia involucrata HOM05D000821 ORTHO05D005255 4.4e-09 63.9 35 80.0
Glyma.18G278850 Glycine max HOM05D000821 ORTHO05D005255 4.4e-09 63.9 35 80.0
Lj2g0000747 Lotus japonicus HOM05D000821 ORTHO05D005255 4.4e-09 63.9 35 80.0
Manes.01G106700 Manihot esculenta HOM05D000821 ORTHO05D005255 4.4e-09 63.9 35 82.9
Carub.0005s0332 Capsella rubella HOM05D000821 ORTHO05D005255 5.8e-09 63.5 35 82.9
HPP92_018539 Vanilla planifolia HOM05D000821 ORTHO05D005255 5.8e-09 63.5 36 75.0
CiPaw.04G005200 Carya illinoinensis HOM05D000821 ORTHO05D005255 7.5e-09 63.2 35 77.1
Haze_11816 Corylus avellana HOM05D000821 ORTHO05D005255 7.5e-09 63.2 35 80.0
Lalb_Chr17g0336661 Lupinus albus HOM05D000821 ORTHO05D005255 7.5e-09 63.2 35 77.1
SHI33682 Sapria himalayana HOM05D000821 ORTHO05D005255 7.5e-09 63.2 34 85.3
CsaV3_2G007760 Cucumis sativus L. HOM05D000821 ORTHO05D005255 1.7e-08 62.0 30 93.3
A03p07480 Brassica napus HOM05D000821 ORTHO05D005255 2.9e-08 61.2 35 71.4
C03p08680 Brassica napus HOM05D000821 ORTHO05D005255 2.9e-08 61.2 35 71.4
BolC3t13368H Brassica oleracea HOM05D000821 ORTHO05D005255 2.9e-08 61.2 35 71.4
BraA03t10077Z Brassica rapa HOM05D000821 ORTHO05D005255 2.9e-08 61.2 35 71.4
Carub.0006s1414 Capsella rubella HOM05D000821 ORTHO05D005255 2.9e-08 61.2 35 71.4
CARHR197360 Cardamine hirsuta HOM05D000821 ORTHO05D005255 2.9e-08 61.2 35 71.4
Aa31LG2G6740 Aethionema arabicum HOM05D000821 ORTHO05D005255 3.7e-08 60.8 35 80.0
Cpa.g.sc53.16 Carica papaya HOM05D000821 ORTHO05D005255 3.7e-08 60.8 35 80.0
TAR626G1302 Trochodendron aralioides HOM05D000821 ORTHO05D005255 4.9e-08 60.5 29 93.1
EL10Ac2g04650 Beta vulgaris HOM05D000821 ORTHO05D005255 6.4e-08 60.1 35 80.0
BcaC01g04446 Brassica carinata HOM05D000821 ORTHO05D005255 6.4e-08 60.1 35 71.4
BcaC04g18922 Brassica carinata HOM05D000821 ORTHO05D005255 6.4e-08 60.1 35 71.4
BcaC05g30356 Brassica carinata HOM05D000821 ORTHO05D005255 6.4e-08 60.1 35 71.4
BcaC05g30359 Brassica carinata HOM05D000821 ORTHO05D005255 6.4e-08 60.1 35 71.4
BolC3t16271H Brassica oleracea HOM05D000821 ORTHO05D005255 6.4e-08 60.1 35 71.4
BolC5t35081H Brassica oleracea HOM05D000821 ORTHO05D005255 6.4e-08 60.1 35 71.4
BraA10t44380Z Brassica rapa HOM05D000821 ORTHO05D005255 6.4e-08 60.1 35 71.4
CARHR076440 Cardamine hirsuta HOM05D000821 ORTHO05D005255 6.4e-08 60.1 35 71.4
Thhalv10015839m.g Eutrema salsugineum HOM05D000821 ORTHO05D005255 6.4e-08 60.1 35 71.4
Nitab4.5_0001036g0070 Nicotiana tabacum HOM05D000821 ORTHO05D000931 6.4e-08 60.1 29 93.1
Carub.0003s0156 Capsella rubella HOM05D000821 ORTHO05D005255 1.1e-07 59.3 35 71.4
Nitab4.5_0022449g0010 Nicotiana tabacum HOM05D000821 ORTHO05D000931 1.9e-07 58.5 29 89.7
vmacro13068 Vaccinium macrocarpon HOM05D000821 ORTHO05D005255 1.9e-07 58.5 32 78.1
Eucgr.J01448 Eucalyptus grandis HOM05D000821 ORTHO05D005255 4.1e-07 57.4 32 78.1
Lalb_Chr21g0318051 Lupinus albus HOM05D000821 ORTHO05D005255 4.1e-07 57.4 30 80.0
AagrBONN_evm.TU.Sc2ySwM_362.875 Anthoceros agrestis HOM05D000821 ORTHO05D005255 5.4e-07 57.0 38 65.8
BcaB01g05013 Brassica carinata HOM05D000821 ORTHO05D005255 7.0e-07 56.6 35 68.6
Peaxi162Scf00026g00023 Petunia axillaris HOM05D000821 ORTHO05D000931 7.0e-07 56.6 33 75.8
Nitab4.5_0001965g0070 Nicotiana tabacum HOM05D000821 ORTHO05D000931 1.6e-06 55.5 30 80.0
Ca_02275_v3 Cicer arietinum L. HOM05D000821 ORTHO05D000931 2.1e-06 55.1 30 76.7
Ciclev10010716m.g Citrus clementina HOM05D000821 ORTHO05D005255 2.1e-06 55.1 29 82.8
Sabra17G0091400 Salix brachista HOM05D000821 ORTHO05D005255 2.1e-06 55.1 32 75.0
SalBow1G0065 Salvia bowleyana HOM05D000821 ORTHO05D000931 2.1e-06 55.1 30 83.3
SalBow1G6886 Salvia bowleyana HOM05D000821 ORTHO05D000931 2.1e-06 55.1 30 83.3
DCAR_020093 Daucus carota HOM05D000821 ORTHO05D000931 2.7e-06 54.7 29 79.3
Solyc02g150147.1 Solanum lycopersicum HOM05D000821 ORTHO05D005255 2.7e-06 54.7 28 85.7
vmacro18092 Vaccinium macrocarpon HOM05D000821 ORTHO05D005255 2.7e-06 54.7 28 82.1
FAN07G0329 Fragaria x ananassa HOM05D000821 ORTHO05D005255 3.5e-06 54.3 28 85.7
Medtr7g018310 Medicago truncatula HOM05D000821 ORTHO05D000931 3.5e-06 54.3 28 82.1
Nn4g23620 Nelumbo nucifera HOM05D000821 ORTHO05D005255 3.5e-06 54.3 28 85.7
Thecc.04G145800 Theobroma cacao HOM05D000821 ORTHO05D000931 3.5e-06 54.3 28 85.7
unitig_8.g3214 Utricularia gibba HOM05D000821 ORTHO05D005255 3.5e-06 54.3 31 77.4
Ciclev10033607m.g Citrus clementina HOM05D000821 ORTHO05D000931 4.6e-06 53.9 28 82.1
FAN17G0115 Fragaria x ananassa HOM05D000821 ORTHO05D005255 4.6e-06 53.9 28 82.1
Medtr0076s0010 Medicago truncatula HOM05D000821 ORTHO05D005255 4.6e-06 53.9 28 82.1
Nitab4.5_0000259g0260 Nicotiana tabacum HOM05D000821 ORTHO05D000931 4.6e-06 53.9 28 82.1
SalBow8G0588 Salvia bowleyana HOM05D000821 ORTHO05D000931 4.6e-06 53.9 28 82.1
SalBow8G4660 Salvia bowleyana HOM05D000821 ORTHO05D000931 4.6e-06 53.9 28 82.1
SGA_v2.0_scaffold16G07853 Striga asiatica HOM05D000821 ORTHO05D000931 4.6e-06 53.9 28 82.1
TAR622G0438 Trochodendron aralioides HOM05D000821 ORTHO05D005255 4.6e-06 53.9 28 82.1
Oeu054563.1 Olea europaea HOM05D000821 ORTHO05D000931 6.0e-06 53.5 28 82.1
Hma1.2p1_0189F.1_g082770 Hydrangea macrophylla HOM05D000821 ORTHO05D000931 7.8e-06 53.1 28 82.1
unitig_22.g6888 Utricularia gibba HOM05D000821 ORTHO05D000931 7.8e-06 53.1 28 82.1


User provided reference genes

Program Settings