Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0007814 Sechium edule HOM05D007070 ORTHO05D008892 4.0e-102 374.8 193 100.0
MELO3C012078.2 Cucumis melo HOM05D007070 ORTHO05D008892 4.8e-79 298.1 198 80.3
CsaV3_5G032500 Cucumis sativus L. HOM05D007070 ORTHO05D008892 5.3e-78 294.7 199 78.9
ClCG05G024460 Citrullus lanatus HOM05D007070 ORTHO05D008892 4.3e-72 275.0 196 74.0
COL.COLO4_22972 Corchorus olitorius HOM05D007070 ORTHO05D008892 3.1e-70 268.9 205 69.3
Duzib251G0126 Durio zibethinus HOM05D007070 ORTHO05D008892 5.3e-70 268.1 203 70.4
Haze_12036 Corylus avellana HOM05D007070 ORTHO05D008892 5.0e-68 261.5 199 68.8
Cpa.g.sc183.28 Carica papaya HOM05D007070 ORTHO05D008892 8.5e-68 260.8 200 69.5
Gohir.A13G072600 Gossypium hirsutum HOM05D007070 ORTHO05D008892 3.2e-67 258.8 204 67.2
Gorai.013G083500 Gossypium raimondii HOM05D007070 ORTHO05D008892 3.6e-66 255.4 204 66.7
Gohir.D13G072700 Gossypium hirsutum HOM05D007070 ORTHO05D008892 4.7e-66 255.0 204 66.7
TWI75G1629 Tripterygium wilfordii HOM05D007070 ORTHO05D008892 4.7e-66 255.0 199 70.9
Manes.05G098800 Manihot esculenta HOM05D007070 ORTHO05D008892 6.1e-66 254.6 203 68.5
Duzib268G0688 Durio zibethinus HOM05D007070 ORTHO05D008892 2.3e-65 252.7 210 63.8
Potri.010G093300 Populus trichocarpa HOM05D007070 ORTHO05D008892 5.1e-65 251.5 204 67.6
Ah.02g131260 Amaranthus hybridus HOM05D007070 ORTHO05D008892 6.7e-65 251.1 173 73.4
Thecc.02G352500 Theobroma cacao HOM05D007070 ORTHO05D008892 6.7e-65 251.1 181 72.4
Phvul.002G088700 Phaseolus vulgaris HOM05D007070 ORTHO05D008892 8.8e-65 250.8 193 71.0
Atru.chr11.1834 Acer truncatum HOM05D007070 ORTHO05D008892 1.1e-64 250.4 203 69.0
Dinv34174 Davidia involucrata HOM05D007070 ORTHO05D008892 1.1e-64 250.4 155 76.1
arahy.Tifrunner.gnm1.ann1.H49BTR Arachis hypogaea HOM05D007070 ORTHO05D008892 3.3e-64 248.8 196 66.8
VMungo1215G0639 Vigna mungo HOM05D007070 ORTHO05D008892 4.4e-64 248.4 156 78.8
RcHm_v2.0_Chr4g0440151 Rosa chinensis HOM05D007070 ORTHO05D008892 5.7e-64 248.1 169 74.0
MD13G1074900 Malus domestica HOM05D007070 ORTHO05D008892 7.4e-64 247.7 171 72.5
TAR622G0001 Trochodendron aralioides HOM05D007070 ORTHO05D008892 7.4e-64 247.7 197 67.5
Ciclev10032797m.g Citrus clementina HOM05D007070 ORTHO05D008892 9.7e-64 247.3 198 67.2
TAR374G1105 Trochodendron aralioides HOM05D007070 ORTHO05D008892 9.7e-64 247.3 197 66.0
Lj3P1040T26 Lonicera japonica HOM05D007070 ORTHO05D008892 2.2e-63 246.1 203 67.0
PGR119G1526 Punica granatum HOM05D007070 ORTHO05D008892 2.2e-63 246.1 173 71.1
arahy.Tifrunner.gnm1.ann1.P1GF9J Arachis hypogaea HOM05D007070 ORTHO05D008892 6.3e-63 244.6 195 66.7
CANSAT56G2723 Cannabis sativa HOM05D007070 ORTHO05D008892 6.3e-63 244.6 169 74.6
FAN07G2888 Fragaria x ananassa HOM05D007070 ORTHO05D008892 6.3e-63 244.6 158 77.2
CSS0037166 Camellia sinensis var. sinensis HOM05D007070 ORTHO05D008892 8.2e-63 244.2 197 67.5
CSS0050316 Camellia sinensis var. sinensis HOM05D007070 ORTHO05D008892 8.2e-63 244.2 197 67.5
AL1G26230 Arabidopsis lyrata HOM05D007070 ORTHO05D008892 1.1e-62 243.8 196 64.8
Hma1.2p1_0598F.1_g186810 Hydrangea macrophylla HOM05D007070 ORTHO05D008892 1.8e-62 243.0 192 67.7
SGA_v2.0_scaffold302G47841 Striga asiatica HOM05D007070 ORTHO05D008892 1.8e-62 243.0 199 65.8
Carub.0001s1403 Capsella rubella HOM05D007070 ORTHO05D008892 2.4e-62 242.7 202 64.9
FAN17G0782 Fragaria x ananassa HOM05D007070 ORTHO05D008892 2.4e-62 242.7 165 75.2
Medtr5g038970 Medicago truncatula HOM05D007070 ORTHO05D008892 3.1e-62 242.3 200 65.0
FAN22G1781 Fragaria x ananassa HOM05D007070 ORTHO05D008892 4.1e-62 241.9 155 77.4
AT1G14345 Arabidopsis thaliana HOM05D007070 ORTHO05D008892 7.0e-62 241.1 200 65.5
Cc11_g13320 Coffea canephora HOM05D007070 ORTHO05D008892 7.0e-62 241.1 192 64.6
Glyma.01G044500 Glycine max HOM05D007070 ORTHO05D008892 9.1e-62 240.7 196 66.3
Actinidia31196 Actinidia chinensis HOM05D007070 ORTHO05D008892 1.2e-61 240.4 195 64.6
DCAR_007140 Daucus carota HOM05D007070 ORTHO05D008892 1.5e-61 240.0 171 71.9
FvH4_4g31650 Fragaria vesca HOM05D007070 ORTHO05D008892 1.5e-61 240.0 158 75.9
Lalb_Chr10g0098121 Lupinus albus HOM05D007070 ORTHO05D008892 1.5e-61 240.0 206 64.6
Nitab4.5_0000141g0310 Nicotiana tabacum HOM05D007070 ORTHO05D008892 1.5e-61 240.0 195 67.7
CiPaw.05G138000 Carya illinoinensis HOM05D007070 ORTHO05D008892 2.0e-61 239.6 196 66.8
AUR62005745 Chenopodium quinoa HOM05D007070 ORTHO05D008892 2.0e-61 239.6 193 64.2
Migut.L01320 Erythranthe guttata HOM05D007070 ORTHO05D008892 2.0e-61 239.6 199 65.8
Nitab4.5_0012600g0010 Nicotiana tabacum HOM05D007070 ORTHO05D008892 2.6e-61 239.2 195 68.7
CARHR014780 Cardamine hirsuta HOM05D007070 ORTHO05D008892 3.5e-61 238.8 197 65.0
SalBow2G0737 Salvia bowleyana HOM05D007070 ORTHO05D008892 3.5e-61 238.8 189 66.1
SalBow2G1571 Salvia bowleyana HOM05D007070 ORTHO05D008892 3.5e-61 238.8 189 66.1
BcaB02g06484 Brassica carinata HOM05D007070 ORTHO05D008892 4.5e-61 238.4 171 71.9
Sabra10G0065800 Salix brachista HOM05D007070 ORTHO05D008892 4.5e-61 238.4 200 65.5
QL03p064901 Quercus lobata HOM05D007070 ORTHO05D008892 5.9e-61 238.0 205 63.9
Ca_04760_v3 Cicer arietinum L. HOM05D007070 ORTHO05D008892 1.3e-60 236.9 200 65.5
Thhalv10008846m.g Eutrema salsugineum HOM05D007070 ORTHO05D008892 1.7e-60 236.5 196 64.8
FAN12G3127 Fragaria x ananassa HOM05D007070 ORTHO05D008892 1.7e-60 236.5 157 74.5
Sc04g0008310 Simmondsia chinensis HOM05D007070 ORTHO05D008892 2.2e-60 236.1 192 65.6
ATR0564G356 Amborella trichopoda HOM05D007070 ORTHO05D008892 1.1e-59 233.8 196 66.8
Lsat_1_v5_gn_8_52140 Lactuca sativa HOM05D007070 ORTHO05D008892 1.1e-59 233.8 192 64.6
Glyma.02G019200 Glycine max HOM05D007070 ORTHO05D008892 1.5e-59 233.4 193 65.3
MSTRG.13406 Avicennia marina HOM05D007070 ORTHO05D008892 2.5e-59 232.6 177 67.8
Prupe.1G271300 Prunus persica HOM05D007070 ORTHO05D008892 2.5e-59 232.6 204 62.3
Sp1g12710 Schrenkiella parvula HOM05D007070 ORTHO05D008892 4.2e-59 231.9 196 64.3
C05p12140 Brassica napus HOM05D007070 ORTHO05D008892 7.2e-59 231.1 176 65.3
Eucgr.G02521 Eucalyptus grandis HOM05D007070 ORTHO05D008892 7.2e-59 231.1 127 85.0
Rhsim12G0131600 Rhododendron simsii HOM05D007070 ORTHO05D008892 1.2e-58 230.3 166 71.7
PSO591G0158 Papaver somniferum HOM05D007070 ORTHO05D008892 2.1e-58 229.6 201 62.7
RhsimUnG0241900 Rhododendron simsii HOM05D007070 ORTHO05D008892 2.1e-58 229.6 179 68.2
BolC5t29966H Brassica oleracea HOM05D007070 ORTHO05D008892 2.7e-58 229.2 177 65.5
CAN.G375.28 Capsicum annuum HOM05D007070 ORTHO05D008892 3.6e-58 228.8 161 74.5
Psat2g122360 Pisum sativum HOM05D007070 ORTHO05D008892 3.6e-58 228.8 175 70.9
PGSC0003DMG400000874 Solanum tuberosum HOM05D007070 ORTHO05D008892 3.6e-58 228.8 198 65.2
A06p10330 Brassica napus HOM05D007070 ORTHO05D008892 1.8e-57 226.5 193 61.7
Lj2g0006172 Lotus japonicus HOM05D007070 ORTHO05D008892 1.8e-57 226.5 128 84.4
PSO832G2327 Papaver somniferum HOM05D007070 ORTHO05D008892 1.8e-57 226.5 201 61.7
BraA06t24215Z Brassica rapa HOM05D007070 ORTHO05D008892 3.0e-57 225.7 193 61.7
Solyc01g010640.3 Solanum lycopersicum HOM05D007070 ORTHO05D008892 5.2e-57 224.9 191 67.0
Aqoxy3G03327 Aquilegia oxysepala HOM05D007070 ORTHO05D008892 1.1e-56 223.8 205 59.5
Peaxi162Scf00026g00288 Petunia axillaris HOM05D007070 ORTHO05D008892 1.5e-56 223.4 197 65.0
Sopen01g006270 Solanum pennellii HOM05D007070 ORTHO05D008892 5.7e-56 221.5 205 62.4
CDE05G3062 Ceratophyllum demersum HOM05D007070 ORTHO05D008892 7.4e-56 221.1 195 63.6
HanXRQChr08g0209191 Helianthus annuus HOM05D007070 ORTHO05D008892 9.7e-56 220.7 195 62.6
MBI05_g00391_MAGBIO Magnolia biondii HOM05D007070 ORTHO05D008892 3.7e-55 218.8 204 64.2
TPR.G36542 Trifolium pratense HOM05D007070 ORTHO05D008892 1.1e-54 217.2 116 86.2
THA.LOC104805942 Tarenaya hassleriana HOM05D007070 ORTHO05D008892 2.4e-54 216.1 186 64.0
ECA236G0127 Erigeron canadensis HOM05D007070 ORTHO05D008892 1.6e-53 213.4 216 57.4
Aa31LG1G700 Aethionema arabicum HOM05D007070 ORTHO05D008892 1.1e-51 207.2 192 57.3
CDE05G3277 Ceratophyllum demersum HOM05D007070 ORTHO05D008892 5.5e-51 204.9 121 78.5
HPP92_018585 Vanilla planifolia HOM05D007070 ORTHO05D008892 2.1e-50 203.0 198 55.6
HPP92_018595 Vanilla planifolia HOM05D007070 ORTHO05D008892 8.0e-50 201.1 198 55.1
unitig_699.g19919 Utricularia gibba HOM05D007070 ORTHO05D008892 1.8e-49 199.9 191 59.2
MSTRG.684 Avicennia marina HOM05D007070 ORTHO05D008892 4.0e-49 198.7 198 57.1
BcaC05g25332 Brassica carinata HOM05D007070 ORTHO05D008892 8.8e-49 197.6 134 73.9
AagrBONN_evm.TU.Sc2ySwM_362.2904 Anthoceros agrestis HOM05D007070 ORTHO05D008892 1.4e-46 190.3 132 65.2
Os03g0170500 Oryza sativa ssp. japonica HOM05D007070 ORTHO05D008892 9.1e-46 187.6 113 77.0
SEGI_28311 Sequoiadendron giganteum HOM05D007070 ORTHO05D008892 1.2e-45 187.2 113 77.0
SMO329G0045 Selaginella moellendorffii HOM05D007070 ORTHO05D008892 1.6e-45 186.8 123 72.4
Zm00001eb402240 Zea mays HOM05D007070 ORTHO05D008892 7.7e-45 184.5 172 58.1
Mapoly0002s0258 Marchantia polymorpha HOM05D007070 ORTHO05D008892 2.5e-43 179.5 150 61.3
Sc04g0008340 Simmondsia chinensis HOM05D007070 ORTHO05D008892 1.1e-38 164.1 192 50.5
CBR_g47945 Chara braunii HOM05D007070 ORTHO05D008892 7.0e-38 161.4 110 63.6
AUR62028813 Chenopodium quinoa HOM05D007070 ORTHO05D008892 5.5e-35 151.8 191 46.1
Cre08.g358540 Chlamydomonas reinhardtii HOM05D007070 ORTHO05D008892 4.4e-24 115.5 129 38.8
MCO16G462 Micromonas commoda HOM05D007070 ORTHO05D008892 3.9e-20 102.4 128 42.2
PRCOL_00004582 Prasinoderma coloniale HOM05D007070 ORTHO05D008892 8.9e-17 91.3 106 42.5
Atru.chr2.2148 Acer truncatum HOM05D007070 ORTHO05D008892 4.4e-16 89.0 52 76.9
Cre07.g321300 Chlamydomonas reinhardtii HOM05D007070 ORTHO05D008892 3.7e-15 85.9 166 29.5


User provided reference genes

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