Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0007775 Sechium edule HOM05D007001 ORTHO05D005587 0.0e+00 1489.2 756 100.0
CsaV3_2G014890 Cucumis sativus L. HOM05D007001 ORTHO05D005587 4.2e-288 994.6 745 72.1
ClCG11G004280 Citrullus lanatus HOM05D007001 ORTHO05D005587 4.8e-284 981.1 776 69.1
MELO3C023308.2 Cucumis melo HOM05D007001 ORTHO05D005587 2.0e-282 975.7 743 71.3
Haze_02407 Corylus avellana HOM05D007001 ORTHO05D005587 8.4e-87 325.9 751 35.6
CiPaw.05G066600 Carya illinoinensis HOM05D007001 ORTHO05D005587 6.7e-84 316.2 755 34.6
QL11p044451 Quercus lobata HOM05D007001 ORTHO05D005587 2.5e-83 314.3 754 34.9
Gohir.D12G029100 Gossypium hirsutum HOM05D007001 ORTHO05D005587 4.9e-79 300.1 761 31.9
Gorai.008G029800 Gossypium raimondii HOM05D007001 ORTHO05D005587 2.5e-78 297.7 756 32.4
Ciclev10027908m.g Citrus clementina HOM05D007001 ORTHO05D005587 1.6e-77 295.0 756 33.3
Atru.chr5.3047 Acer truncatum HOM05D007001 ORTHO05D005587 2.1e-77 294.7 760 33.4
Cfa004981 Carpinus fangiana HOM05D007001 ORTHO05D005587 2.1e-77 294.7 739 35.0
MD10G1072800 Malus domestica HOM05D007001 ORTHO05D005587 6.0e-77 293.1 730 34.4
Thecc.02G082800 Theobroma cacao HOM05D007001 ORTHO05D005587 8.7e-76 289.3 759 32.1
COL.COLO4_25959 Corchorus olitorius HOM05D007001 ORTHO05D005587 2.0e-72 278.1 754 32.4
Duzib132G0641 Durio zibethinus HOM05D007001 ORTHO05D005587 1.0e-71 275.8 760 32.4
Duzib052G0704 Durio zibethinus HOM05D007001 ORTHO05D005587 1.1e-70 272.3 758 31.5
MD05G1064100 Malus domestica HOM05D007001 ORTHO05D005587 1.4e-70 271.9 742 32.1
CiPaw.06G134300 Carya illinoinensis HOM05D007001 ORTHO05D005587 4.2e-70 270.4 683 33.7
Manes.04G089500 Manihot esculenta HOM05D007001 ORTHO05D005587 8.2e-66 256.1 740 31.5
Prupe.8G094200 Prunus persica HOM05D007001 ORTHO05D005587 4.1e-65 253.8 744 31.7
Potri.004G157000 Populus trichocarpa HOM05D007001 ORTHO05D005587 1.5e-64 251.9 781 31.2
Manes.11G085600 Manihot esculenta HOM05D007001 ORTHO05D005587 2.2e-63 248.1 758 30.5
TAR376G0762 Trochodendron aralioides HOM05D007001 ORTHO05D005587 2.5e-62 244.6 808 30.3
Actinidia00536 Actinidia chinensis HOM05D007001 ORTHO05D005587 5.5e-62 243.4 781 31.5
Sabra09G0090900 Salix brachista HOM05D007001 ORTHO05D005587 4.6e-61 240.4 725 32.0
RcHm_v2.0_Chr6g0265031 Rosa chinensis HOM05D007001 ORTHO05D005587 1.0e-60 239.2 748 32.2
TWI79G0124 Tripterygium wilfordii HOM05D007001 ORTHO05D005587 1.8e-60 238.4 753 31.1
Potri.009G118651 Populus trichocarpa HOM05D007001 ORTHO05D005587 1.5e-59 235.3 776 31.6
GSVIVG01023803001 Vitis vinifera HOM05D007001 ORTHO05D005587 9.7e-59 232.6 394 42.1
Glyma.12G042500 Glycine max HOM05D007001 ORTHO05D005587 1.3e-58 232.3 755 29.8
Glyma.11G116700 Glycine max HOM05D007001 ORTHO05D005587 1.1e-57 229.2 748 29.9
Lj3g0024948 Lotus japonicus HOM05D007001 ORTHO05D005587 2.4e-57 228.0 759 29.8
TWI31G1402 Tripterygium wilfordii HOM05D007001 ORTHO05D005587 4.1e-57 227.3 747 30.3
Nn5g29665 Nelumbo nucifera HOM05D007001 ORTHO05D005587 2.6e-56 224.6 798 29.7
FvH4_2g09190 Fragaria vesca HOM05D007001 ORTHO05D005587 3.4e-56 224.2 748 31.3
vmacro02090 Vaccinium macrocarpon HOM05D007001 ORTHO05D005587 2.5e-54 218.0 768 30.2
Sabra04G0104900 Salix brachista HOM05D007001 ORTHO05D005587 4.2e-54 217.2 789 29.9
Phvul.011G044100 Phaseolus vulgaris HOM05D007001 ORTHO05D005587 4.7e-53 213.8 746 29.5
Eucgr.G01689 Eucalyptus grandis HOM05D007001 ORTHO05D005587 6.1e-53 213.4 779 30.3
Rhsim11G0179000 Rhododendron simsii HOM05D007001 ORTHO05D005587 1.8e-52 211.8 493 35.1
Actinidia36006 Actinidia chinensis HOM05D007001 ORTHO05D005587 1.1e-51 209.1 752 30.6
VMungo1127G1486 Vigna mungo HOM05D007001 ORTHO05D005587 2.6e-51 208.0 753 29.7
CSS0022058 Camellia sinensis var. sinensis HOM05D007001 ORTHO05D005587 1.1e-49 202.6 758 29.6
Medtr4g070420 Medicago truncatula HOM05D007001 ORTHO05D005587 9.1e-49 199.5 726 29.2
Cpa.g.sc17.13 Carica papaya HOM05D007001 ORTHO05D005587 4.5e-48 197.2 774 29.2
Lalb_Chr19g0138701 Lupinus albus HOM05D007001 ORTHO05D005587 7.7e-48 196.4 750 28.4
FAN24G0234 Fragaria x ananassa HOM05D007001 ORTHO05D005587 3.8e-47 194.1 730 30.3
FAN15G3137 Fragaria x ananassa HOM05D007001 ORTHO05D005587 5.0e-47 193.7 724 29.8
Ca_20889_v3 Cicer arietinum L. HOM05D007001 ORTHO05D005587 8.5e-47 193.0 757 28.9
TPR.G22545 Trifolium pratense HOM05D007001 ORTHO05D005587 1.1e-46 192.6 741 29.1
FAN27G0151 Fragaria x ananassa HOM05D007001 ORTHO05D005587 4.0e-44 184.1 731 29.3
Lalb_Chr03g0025591 Lupinus albus HOM05D007001 ORTHO05D005587 4.0e-44 184.1 746 27.6
Cc02_g17350 Coffea canephora HOM05D007001 ORTHO05D005587 6.7e-44 183.3 746 28.8
Oeu029153.2 Olea europaea HOM05D007001 ORTHO05D005587 1.5e-43 182.2 744 27.3
arahy.Tifrunner.gnm1.ann1.M1RWF9 Arachis hypogaea HOM05D007001 ORTHO05D005587 2.6e-43 181.4 772 27.7
Dinv23502 Davidia involucrata HOM05D007001 ORTHO05D005587 7.5e-43 179.9 523 31.0
arahy.Tifrunner.gnm1.ann1.I3TCZM Arachis hypogaea HOM05D007001 ORTHO05D005587 9.7e-43 179.5 786 27.9
MBI10_g06730_MAGBIO Magnolia biondii HOM05D007001 ORTHO05D005587 2.2e-42 178.3 545 31.7
Gohir.A12G029800 Gossypium hirsutum HOM05D007001 ORTHO05D005587 2.0e-40 171.8 489 31.3
Psat7g184200 Pisum sativum HOM05D007001 ORTHO05D005587 1.5e-38 165.6 736 27.4
Peaxi162Scf00016g00623 Petunia axillaris HOM05D007001 ORTHO05D005587 6.1e-37 160.2 744 27.8
AUR62011300 Chenopodium quinoa HOM05D007001 ORTHO05D005587 8.0e-37 159.8 418 32.1
AUR62016758 Chenopodium quinoa HOM05D007001 ORTHO05D005587 3.0e-36 157.9 411 31.6
Oeu055597.1 Olea europaea HOM05D007001 ORTHO05D005587 4.0e-36 157.5 540 30.2
ECA240G0129 Erigeron canadensis HOM05D007001 ORTHO05D005587 8.8e-36 156.4 477 30.2
PGSC0003DMG400000714 Solanum tuberosum HOM05D007001 ORTHO05D005587 1.5e-35 155.6 410 32.4
PGR042G0047 Punica granatum HOM05D007001 ORTHO05D005587 2.6e-35 154.8 769 28.0
Nitab4.5_0000308g0260 Nicotiana tabacum HOM05D007001 ORTHO05D005587 1.1e-33 149.4 411 32.6
Hund06244 Selenicereus undatus HOM05D007001 ORTHO05D005587 2.0e-32 145.2 419 31.3
Solyc01g109780.3 Solanum lycopersicum HOM05D007001 ORTHO05D005587 2.0e-32 145.2 750 25.6
Aqoxy5G01586 Aquilegia oxysepala HOM05D007001 ORTHO05D005587 7.7e-32 143.3 671 27.0
Nitab4.5_0008874g0010 Nicotiana tabacum HOM05D007001 ORTHO05D005587 1.3e-31 142.5 439 31.7
Migut.N01249 Erythranthe guttata HOM05D007001 ORTHO05D005587 3.8e-31 141.0 465 31.0
MBI16_g08804_MAGBIO Magnolia biondii HOM05D007001 ORTHO05D005587 5.0e-31 140.6 407 33.9
Sopen01g051970 Solanum pennellii HOM05D007001 ORTHO05D005587 1.1e-30 139.4 755 26.2
Nitab4.5_0009972g0010 Nicotiana tabacum HOM05D007001 ORTHO05D005587 3.6e-29 134.4 393 33.6
SalBow3G2815 Salvia bowleyana HOM05D007001 ORTHO05D005587 8.0e-29 133.3 419 32.2
PSO764G0276 Papaver somniferum HOM05D007001 ORTHO05D005587 4.4e-27 127.5 313 32.9
HanXRQChr03g0074191 Helianthus annuus HOM05D007001 ORTHO05D005587 7.5e-27 126.7 403 30.8
PSO170G6310 Papaver somniferum HOM05D007001 ORTHO05D005587 1.3e-26 125.9 311 31.8
Ah.01g019240 Amaranthus hybridus HOM05D007001 ORTHO05D005587 1.7e-26 125.6 477 28.1
EL10Ac9g21706 Beta vulgaris HOM05D007001 ORTHO05D005587 1.1e-25 122.9 473 26.8
Lalb_Chr01g0002461 Lupinus albus HOM05D007001 ORTHO05D005587 2.4e-25 121.7 327 32.4
Peaxi162Scf00003g01121 Petunia axillaris HOM05D007001 ORTHO05D005587 1.2e-24 119.4 332 33.1
Nitab4.5_0007728g0020 Nicotiana tabacum HOM05D007001 ORTHO05D005587 3.3e-22 111.3 247 34.4
SalBow6G2324 Salvia bowleyana HOM05D007001 ORTHO05D005587 2.3e-20 105.1 433 27.7
Aqoxy6G01158 Aquilegia oxysepala HOM05D007001 ORTHO05D005587 3.7e-18 97.8 526 27.8
Migut.B00223 Erythranthe guttata HOM05D007001 ORTHO05D005587 3.7e-18 97.8 409 28.4
THA.LOC104807308 Tarenaya hassleriana HOM05D007001 ORTHO05D005587 3.7e-18 97.8 397 28.0
PSO675G1875 Papaver somniferum HOM05D007001 ORTHO05D005587 9.2e-17 93.2 751 24.6
AL3G52490 Arabidopsis lyrata HOM05D008776 ORTHO05D005587 1.2e-16 92.8 288 30.9
Carub.0003s3009 Capsella rubella HOM05D008776 ORTHO05D005587 2.7e-16 91.7 351 27.9
PGSC0003DMG400007729 Solanum tuberosum HOM05D007001 ORTHO05D005587 4.6e-16 90.9 255 33.3
Sopen10g023370 Solanum pennellii HOM05D007001 ORTHO05D005587 1.7e-15 89.0 250 32.4
AT2G16365 Arabidopsis thaliana HOM05D008776 ORTHO05D005587 3.0e-15 88.2 287 28.9
Nn1g04928 Nelumbo nucifera HOM05D007001 ORTHO05D005587 3.0e-15 88.2 504 25.4
Aa31LG8G13740 Aethionema arabicum HOM05D008776 ORTHO05D005587 5.0e-15 87.4 302 31.1
BcaB08g34642 Brassica carinata HOM05D008776 ORTHO05D005587 6.6e-15 87.0 430 25.6
DCAR_001566 Daucus carota HOM05D007001 ORTHO05D005587 7.3e-14 83.6 415 27.5
A07p04560 Brassica napus HOM05D008776 ORTHO05D005587 1.6e-13 82.4 287 27.5
BraA07t28245Z Brassica rapa HOM05D008776 ORTHO05D005587 1.6e-13 82.4 287 27.5
Lsat_1_v5_gn_9_108461 Lactuca sativa HOM05D007001 ORTHO05D005587 1.6e-13 82.4 493 26.8
Sp3g29580 Schrenkiella parvula HOM05D008776 ORTHO05D005587 4.7e-13 80.9 288 29.2
BcaB03g16349 Brassica carinata HOM05D008776 ORTHO05D005587 1.0e-12 79.7 288 28.8
BcaC01g03031 Brassica carinata HOM05D008776 ORTHO05D005587 1.0e-12 79.7 303 27.4
BcaC06g36144 Brassica carinata HOM05D008776 ORTHO05D005587 1.0e-12 79.7 287 27.9
C03p56950 Brassica napus HOM05D008776 ORTHO05D005587 1.0e-12 79.7 303 27.4
BolC3t17973H Brassica oleracea HOM05D008776 ORTHO05D005587 1.0e-12 79.7 303 27.4
BolC7t41148H Brassica oleracea HOM05D008776 ORTHO05D005587 1.0e-12 79.7 287 27.9
C07p07280 Brassica napus HOM05D008776 ORTHO05D005587 1.4e-12 79.3 287 27.5
THA.LOC104804555 Tarenaya hassleriana HOM05D007001 ORTHO05D005587 1.4e-12 79.3 431 27.4
Oeu020745.1 Olea europaea HOM05D000342 ORTHO05D000217 2.3e-12 78.6 218 31.7
SGA_v2.0_scaffold125G33736 Striga asiatica HOM05D007001 ORTHO05D005587 2.3e-12 78.6 298 31.5
CDE06G0685 Ceratophyllum demersum HOM05D007001 ORTHO05D005587 4.0e-12 77.8 216 29.6
Thhalv10022682m.g Eutrema salsugineum HOM05D008776 ORTHO05D005587 5.2e-12 77.4 319 27.3
A03p45740 Brassica napus HOM05D008776 ORTHO05D005587 6.8e-12 77.0 302 27.2
BraA03t13706Z Brassica rapa HOM05D008776 ORTHO05D005587 1.5e-11 75.9 301 27.2
CDE05G0774 Ceratophyllum demersum HOM05D007001 ORTHO05D005587 5.8e-11 73.9 175 31.4
DCAR_028976 Daucus carota HOM05D007001 ORTHO05D005587 9.8e-11 73.2 401 25.9
CARHR106580 Cardamine hirsuta HOM05D008776 ORTHO05D005587 6.4e-10 70.5 226 30.1
Solyc10g052650.3 Solanum lycopersicum HOM05D007001 ORTHO05D005587 6.4e-10 70.5 82 45.1
Os01g0687300 Oryza sativa ssp. japonica HOM05D024721 ORTHO05D025980 7.0e-09 67.0 234 29.9
HPP92_021324 Vanilla planifolia HOM05D007001 ORTHO05D005587 1.3e-07 62.8 223 26.9
Carub.0007s0575 Capsella rubella HOM05D008776 ORTHO05D005587 1.9e-06 58.9 207 28.5
BcaC02g07919 Brassica carinata HOM05D008776 ORTHO05D005587 2.5e-06 58.5 74 37.8


User provided reference genes

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