Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0007766 Sechium edule HOM05D006075 ORTHO05D007527 4.6e-261 904.0 466 100.0
MELO3C005634.2 Cucumis melo HOM05D006075 ORTHO05D007527 5.3e-233 810.8 469 88.3
CsaV3_5G003210 Cucumis sativus L. HOM05D006075 ORTHO05D007527 9.1e-233 810.1 470 88.1
ClCG01G003090 Citrullus lanatus HOM05D006075 ORTHO05D007527 6.1e-197 691.0 475 78.1
CiPaw.11G140500 Carya illinoinensis HOM05D006075 ORTHO05D007527 2.9e-191 672.2 468 73.1
QL12p017421 Quercus lobata HOM05D006075 ORTHO05D007527 3.3e-190 668.7 465 71.8
RcHm_v2.0_Chr7g0199111 Rosa chinensis HOM05D006075 ORTHO05D007527 1.6e-184 649.8 466 72.1
Prupe.5G091900 Prunus persica HOM05D006075 ORTHO05D007527 2.0e-184 649.4 468 70.7
Atru.chr9.1549 Acer truncatum HOM05D006075 ORTHO05D007527 3.9e-183 645.2 470 70.2
Ciclev10019953m.g Citrus clementina HOM05D006075 ORTHO05D007527 2.8e-181 639.0 472 69.9
Dinv37681 Davidia involucrata HOM05D006075 ORTHO05D007527 3.6e-181 638.6 448 71.9
FAN18G0544 Fragaria x ananassa HOM05D006075 ORTHO05D007527 8.9e-180 634.0 456 72.1
FAN08G0877 Fragaria x ananassa HOM05D006075 ORTHO05D007527 1.5e-179 633.3 456 72.1
Manes.01G066100 Manihot esculenta HOM05D006075 ORTHO05D007527 1.5e-179 633.3 464 69.0
Potri.001G109200 Populus trichocarpa HOM05D006075 ORTHO05D007527 2.6e-179 632.5 461 69.4
CANSAT21G0515 Cannabis sativa HOM05D006075 ORTHO05D007527 7.5e-179 630.9 459 69.3
FAN04G1557 Fragaria x ananassa HOM05D006075 ORTHO05D007527 1.3e-178 630.2 460 71.3
MD06G1073700 Malus domestica HOM05D006075 ORTHO05D007527 4.9e-178 628.2 472 69.3
GSVIVG01019817001 Vitis vinifera HOM05D006075 ORTHO05D007527 1.4e-177 626.7 455 70.3
Thecc.02G127300 Theobroma cacao HOM05D006075 ORTHO05D007527 1.9e-177 626.3 458 69.9
TWI81G0173 Tripterygium wilfordii HOM05D006075 ORTHO05D007527 1.9e-177 626.3 456 70.2
Lj4g0025720 Lotus japonicus HOM05D006075 ORTHO05D007527 7.1e-177 624.4 462 69.7
Eucgr.E00536 Eucalyptus grandis HOM05D006075 ORTHO05D007527 1.2e-176 623.6 457 69.4
Gorai.002G011900 Gossypium raimondii HOM05D006075 ORTHO05D007527 7.8e-176 620.9 459 70.4
Glyma.17G131000 Glycine max HOM05D006075 ORTHO05D007527 1.3e-175 620.2 461 69.8
Nn6g34229 Nelumbo nucifera HOM05D006075 ORTHO05D007527 1.7e-175 619.8 457 69.1
Gohir.A01G010200 Gossypium hirsutum HOM05D006075 ORTHO05D007527 5.1e-175 618.2 459 69.7
Phvul.003G211900 Phaseolus vulgaris HOM05D006075 ORTHO05D007527 6.6e-175 617.8 457 69.6
Sabra01G0082500 Salix brachista HOM05D006075 ORTHO05D007527 2.5e-174 615.9 500 64.4
Medtr4g102820 Medicago truncatula HOM05D006075 ORTHO05D007527 4.3e-174 615.1 472 68.0
Gohir.D01G009800 Gossypium hirsutum HOM05D006075 ORTHO05D007527 5.6e-174 614.8 450 70.2
AT1G63110 Arabidopsis thaliana HOM05D006075 ORTHO05D007527 3.6e-173 612.1 457 67.8
Thhalv10023435m.g Eutrema salsugineum HOM05D006075 ORTHO05D007527 3.6e-173 612.1 464 67.5
TPR.G19222 Trifolium pratense HOM05D006075 ORTHO05D007527 3.1e-172 609.0 464 67.7
Sp2g01480 Schrenkiella parvula HOM05D006075 ORTHO05D007527 4.0e-172 608.6 456 68.6
Carub.0002s0185 Capsella rubella HOM05D006075 ORTHO05D007527 5.2e-172 608.2 459 68.4
TPR.G23260 Trifolium pratense HOM05D006075 ORTHO05D007527 5.2e-172 608.2 463 67.2
Cc08_g14070 Coffea canephora HOM05D006075 ORTHO05D007527 2.0e-171 606.3 449 69.0
CSS0042428 Camellia sinensis var. sinensis HOM05D006075 ORTHO05D007527 4.4e-171 605.1 436 69.3
Lj2A193G48 Lonicera japonica HOM05D006075 ORTHO05D007527 5.8e-171 604.7 439 69.7
AL2G12410 Arabidopsis lyrata HOM05D006075 ORTHO05D007527 1.7e-170 603.2 453 67.8
BcaB07g31383 Brassica carinata HOM05D006075 ORTHO05D007527 1.7e-170 603.2 456 67.8
THA.LOC104818186 Tarenaya hassleriana HOM05D006075 ORTHO05D007527 4.9e-170 601.7 457 67.0
Aa31LG2G590 Aethionema arabicum HOM05D006075 ORTHO05D007527 1.1e-169 600.5 480 64.8
Psat4g067760 Pisum sativum HOM05D006075 ORTHO05D007527 1.4e-169 600.1 463 67.4
MSTRG.13821 Avicennia marina HOM05D006075 ORTHO05D007527 2.4e-169 599.4 450 68.0
Oeu011664.1 Olea europaea HOM05D006075 ORTHO05D007527 5.4e-169 598.2 461 67.0
Rhsim07G0094000 Rhododendron simsii HOM05D006075 ORTHO05D007527 5.4e-169 598.2 475 65.7
Lalb_Chr09g0333281 Lupinus albus HOM05D006075 ORTHO05D007527 7.1e-169 597.8 462 65.8
BcaC04g22472 Brassica carinata HOM05D006075 ORTHO05D007527 1.2e-168 597.0 460 67.4
A09p15680 Brassica napus HOM05D006075 ORTHO05D007527 6.0e-168 594.7 463 68.0
BraA09t37209Z Brassica rapa HOM05D006075 ORTHO05D007527 6.0e-168 594.7 463 68.0
Lalb_Chr16g0389751 Lupinus albus HOM05D006075 ORTHO05D007527 6.0e-168 594.7 456 67.5
arahy.Tifrunner.gnm1.ann1.M2EVQD Arachis hypogaea HOM05D006075 ORTHO05D007527 7.8e-168 594.3 465 66.7
PSO478G2556 Papaver somniferum HOM05D006075 ORTHO05D007527 1.0e-167 594.0 460 65.2
Psat1g082240 Pisum sativum HOM05D006075 ORTHO05D007527 1.0e-167 594.0 463 67.2
C09p18910 Brassica napus HOM05D006075 ORTHO05D007527 1.3e-167 593.6 463 67.8
MD04G1066500 Malus domestica HOM05D006075 ORTHO05D007527 3.0e-167 592.4 436 70.6
Solyc08g080420.4 Solanum lycopersicum HOM05D006075 ORTHO05D007527 2.5e-166 589.3 460 64.8
Sopen08g028750 Solanum pennellii HOM05D006075 ORTHO05D007527 2.5e-166 589.3 458 65.3
Migut.E01290 Erythranthe guttata HOM05D006075 ORTHO05D007527 4.3e-166 588.6 458 65.7
CAN.G981.23 Capsicum annuum HOM05D006075 ORTHO05D007527 5.6e-166 588.2 451 66.1
PSO782G2103 Papaver somniferum HOM05D006075 ORTHO05D007527 4.7e-165 585.1 460 64.3
ECA240G3011 Erigeron canadensis HOM05D006075 ORTHO05D007527 8.9e-164 580.9 456 66.4
HanXRQChr03g0085661 Helianthus annuus HOM05D006075 ORTHO05D007527 8.9e-164 580.9 449 68.4
BolC9t54793H Brassica oleracea HOM05D006075 ORTHO05D007527 4.2e-161 572.0 465 66.0
arahy.Tifrunner.gnm1.ann1.S8HR28 Arachis hypogaea HOM05D006075 ORTHO05D007527 7.3e-158 561.2 465 64.7
VMungo1215G1399 Vigna mungo HOM05D006075 ORTHO05D007527 4.8e-157 558.5 417 70.3
AT1G12730 Arabidopsis thaliana HOM05D006075 ORTHO05D007527 2.4e-156 556.2 451 63.2
FvH4_5g01570 Fragaria vesca HOM05D006075 ORTHO05D007527 3.4e-155 552.4 411 70.3
PGR042G3166 Punica granatum HOM05D006075 ORTHO05D007527 7.6e-155 551.2 458 63.3
SalBow1G6580 Salvia bowleyana HOM05D006075 ORTHO05D007527 5.4e-153 545.0 555 54.6
Carub.0001s1243 Capsella rubella HOM05D006075 ORTHO05D007527 3.5e-152 542.3 451 62.1
HPP92_001310 Vanilla planifolia HOM05D006075 ORTHO05D007527 7.3e-150 534.6 443 62.8
Actinidia05225 Actinidia chinensis HOM05D006075 ORTHO05D007527 1.8e-148 530.0 456 61.0
Os02g0688900 Oryza sativa ssp. japonica HOM05D006075 ORTHO05D007527 1.8e-148 530.0 445 61.8
SGA_v2.0_scaffold385G50455 Striga asiatica HOM05D006075 ORTHO05D007527 3.4e-147 525.8 465 60.9
CDE11G0531 Ceratophyllum demersum HOM05D006075 ORTHO05D007527 2.4e-145 519.6 448 61.6
Lsat_1_v5_gn_6_87521 Lactuca sativa HOM05D006075 ORTHO05D007527 2.4e-145 519.6 435 64.1
EL10Ac5g12736 Beta vulgaris HOM05D006075 ORTHO05D007527 4.2e-145 518.8 439 61.3
FAN13G2280 Fragaria x ananassa HOM05D006075 ORTHO05D007527 6.2e-141 505.0 380 69.5
Peaxi162Scf00714g00528 Petunia axillaris HOM05D006075 ORTHO05D007527 8.1e-141 504.6 533 54.0
SEGI_27555 Sequoiadendron giganteum HOM05D006075 ORTHO05D007527 5.3e-140 501.9 476 56.1
vmacro13924 Vaccinium macrocarpon HOM05D006075 ORTHO05D007527 2.9e-138 496.1 458 58.5
FAN08G0114 Fragaria x ananassa HOM05D006075 ORTHO05D007527 8.4e-138 494.6 403 66.5
TAR629G3145 Trochodendron aralioides HOM05D006075 ORTHO05D007527 6.0e-136 488.4 370 67.6
Sed0016840 Sechium edule HOM05D006075 ORTHO05D007527 1.0e-135 487.6 269 94.1
HanXRQChr11g0323321 Helianthus annuus HOM05D006075 ORTHO05D007527 1.3e-135 487.3 449 60.6
AL1G24320 Arabidopsis lyrata HOM05D006075 ORTHO05D007527 3.0e-135 486.1 452 57.7
Manes.02G026900 Manihot esculenta HOM05D006075 ORTHO05D007527 1.5e-134 483.8 504 55.2
COL.COLO4_32412 Corchorus olitorius HOM05D006075 ORTHO05D007527 1.6e-133 480.3 476 58.8
Duzib052G1148 Durio zibethinus HOM05D006075 ORTHO05D007527 1.3e-130 470.7 455 57.1
TAR629G0535 Trochodendron aralioides HOM05D006075 ORTHO05D007527 1.1e-126 457.6 340 68.8
unitig_744.g24646 Utricularia gibba HOM05D006075 ORTHO05D007527 4.2e-121 439.1 453 53.2
Nitab4.5_0002853g0070 Nicotiana tabacum HOM05D006075 ORTHO05D007527 3.9e-119 432.6 506 50.6
PSO478G1113 Papaver somniferum HOM05D006075 ORTHO05D007527 3.9e-119 432.6 317 67.8
Sc01g0008740 Simmondsia chinensis HOM05D006075 ORTHO05D007527 2.0e-115 420.2 356 61.8
Nitab4.5_0016932g0010 Nicotiana tabacum HOM05D006075 ORTHO05D007527 3.4e-115 419.5 467 51.4
CARHR013020 Cardamine hirsuta HOM05D006075 ORTHO05D007527 2.2e-114 416.8 359 59.9
ATR0322G053 Amborella trichopoda HOM05D006075 ORTHO05D007527 1.7e-109 400.6 323 62.2
Glyma.05G049100 Glycine max HOM05D006075 ORTHO05D007527 2.8e-109 399.8 325 66.2
Pp3c9_23740 Physcomitrium patens HOM05D006075 ORTHO05D007527 1.8e-108 397.1 466 48.9
PGSC0003DMG400003033 Solanum tuberosum HOM05D006075 ORTHO05D007527 2.4e-108 396.7 434 51.8
Haze_08940 Corylus avellana HOM05D006075 ORTHO05D007527 4.1e-108 396.0 272 73.2
Mapoly0001s0316 Marchantia polymorpha HOM05D006075 ORTHO05D007527 2.7e-104 383.3 465 46.5
Ah.12g057560 Amaranthus hybridus HOM05D006075 ORTHO05D007527 1.6e-99 367.5 433 49.0
SMO270G0127 Selaginella moellendorffii HOM05D006075 ORTHO05D007527 4.5e-99 365.9 460 45.4
CARHR048400 Cardamine hirsuta HOM05D006075 ORTHO05D007527 7.7e-99 365.2 308 61.4
Hund14727 Selenicereus undatus HOM05D006075 ORTHO05D007527 1.7e-93 347.4 462 46.5
Zm00001eb251050 Zea mays HOM05D006075 ORTHO05D007527 1.7e-85 320.9 301 57.1
Cpa.g.sc74.79 Carica papaya HOM05D006075 ORTHO05D007527 1.2e-78 298.1 298 53.7
Dinv39003 Davidia involucrata HOM05D006075 ORTHO05D007527 6.6e-74 282.3 278 56.1
AagrBONN_evm.TU.Sc2ySwM_117.1004 Anthoceros agrestis HOM05D006075 ORTHO05D007527 6.8e-71 272.3 345 46.4
CBR_g17923 Chara braunii HOM05D006075 ORTHO05D007527 2.6e-62 243.8 759 28.3
Os01g0870201 Oryza sativa ssp. japonica HOM05D006075 ORTHO05D007527 4.6e-59 233.0 449 36.5
CSS0009197 Camellia sinensis var. sinensis HOM05D006075 ORTHO05D007527 1.0e-58 231.9 414 38.4
Ca_20251_v3 Cicer arietinum L. HOM05D006075 ORTHO05D007527 6.4e-53 212.6 156 69.2
TAR636G1294 Trochodendron aralioides HOM05D006075 ORTHO05D007527 9.6e-41 172.2 160 61.2
AUR62017286 Chenopodium quinoa HOM05D006075 ORTHO05D007527 3.6e-40 170.2 180 54.4
MCO15G123 Micromonas commoda HOM05D006075 ORTHO05D007527 6.0e-35 152.9 431 29.2
C09p15950 Brassica napus HOM05D006075 ORTHO05D007527 1.7e-29 134.8 88 72.7
AUR62010644 Chenopodium quinoa HOM05D006075 ORTHO05D007527 2.2e-29 134.4 181 45.3
TAR636G2798 Trochodendron aralioides HOM05D006075 ORTHO05D007527 5.1e-26 123.2 67 83.6
Eucgr.H02816 Eucalyptus grandis HOM05D005128 ORTHO05D006227 3.7e-24 117.1 76 72.4
BolC9t54506H Brassica oleracea HOM05D006075 ORTHO05D007527 1.4e-23 115.2 105 59.0
ATR0322G060 Amborella trichopoda HOM05D006075 ORTHO05D007527 1.2e-22 112.1 90 60.0
PRCOL_00005762 Prasinoderma coloniale HOM05D006075 ORTHO05D007527 3.2e-20 104.0 316 27.8
Cre03.g150400 Chlamydomonas reinhardtii HOM05D006075 ORTHO05D007527 7.9e-11 72.8 162 30.2
Actinidia27405 Actinidia chinensis HOM05D006075 ORTHO05D007527 1.5e-09 68.6 60 63.3
Pp3c15_22645 Physcomitrium patens HOM05D006075 ORTHO05D007527 3.3e-09 67.4 113 38.9
Lsat_1_v5_gn_5_145360 Lactuca sativa HOM05D000561 ORTHO05D008162 1.4e-07 62.0 68 48.5
FAN15G2177 Fragaria x ananassa HOM05D004598 ORTHO05D005550 5.9e-06 56.6 305 26.2
SalBow6G7131 Salvia bowleyana HOM05D004598 ORTHO05D005550 7.7e-06 56.2 300 24.3


User provided reference genes

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