Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0007704 Sechium edule HOM05D005703 ORTHO05D006643 2.3e-154 548.9 281 100.0
MELO3C002791.2 Cucumis melo HOM05D005703 ORTHO05D006643 6.7e-114 414.5 257 84.0
CsaV3_7G000370 Cucumis sativus L. HOM05D005703 ORTHO05D006643 5.7e-113 411.4 257 84.4
QL11p045612 Quercus lobata HOM05D005703 ORTHO05D006643 2.6e-97 359.4 259 74.9
CiPaw.06G130900 Carya illinoinensis HOM05D005703 ORTHO05D006643 2.8e-96 355.9 262 74.0
Atru.chr5.3109 Acer truncatum HOM05D005703 ORTHO05D006643 3.4e-94 349.0 253 75.9
Potri.004G160800 Populus trichocarpa HOM05D005703 ORTHO05D006643 5.9e-94 348.2 251 74.9
GSVIVG01024205001 Vitis vinifera HOM05D005703 ORTHO05D006643 2.9e-93 345.9 259 72.6
Cpa.g.sc150.43 Carica papaya HOM05D005703 ORTHO05D006643 3.8e-93 345.5 235 77.0
Manes.11G087800 Manihot esculenta HOM05D005703 ORTHO05D006643 5.0e-93 345.1 261 71.6
MD10G1066100 Malus domestica HOM05D005703 ORTHO05D006643 2.5e-92 342.8 235 76.6
Lsat_1_v5_gn_5_125081 Lactuca sativa HOM05D005703 ORTHO05D006643 9.4e-92 340.9 262 70.2
Aqoxy5G01507 Aquilegia oxysepala HOM05D005703 ORTHO05D006643 1.2e-91 340.5 241 73.4
RcHm_v2.0_Chr6g0266981 Rosa chinensis HOM05D005703 ORTHO05D006643 2.1e-91 339.7 262 71.8
Actinidia02238 Actinidia chinensis HOM05D005703 ORTHO05D006643 4.7e-91 338.6 255 70.6
Cfa005074 Carpinus fangiana HOM05D005703 ORTHO05D006643 4.7e-91 338.6 220 80.5
TWI31G0330 Tripterygium wilfordii HOM05D005703 ORTHO05D006643 1.4e-90 337.0 228 76.3
FvH4_2g10050 Fragaria vesca HOM05D005703 ORTHO05D006643 3.9e-90 335.5 254 70.9
Actinidia27862 Actinidia chinensis HOM05D005703 ORTHO05D006643 1.1e-89 334.0 255 69.8
Nn6g32200 Nelumbo nucifera HOM05D005703 ORTHO05D006643 3.3e-89 332.4 240 74.6
CSS0001334 Camellia sinensis var. sinensis HOM05D005703 ORTHO05D006643 7.4e-89 331.3 210 82.9
Hma1.2p1_0066F.1_g035910 Hydrangea macrophylla HOM05D005703 ORTHO05D006643 7.4e-89 331.3 211 80.6
Sabra04G0107600 Salix brachista HOM05D005703 ORTHO05D006643 9.7e-89 330.9 205 83.4
Dinv23475 Davidia involucrata HOM05D005703 ORTHO05D006643 2.8e-88 329.3 236 74.6
ClCG02G004580 Citrullus lanatus HOM05D005703 ORTHO05D006643 5.3e-87 325.1 263 71.1
Gohir.D12G030600 Gossypium hirsutum HOM05D005703 ORTHO05D006643 5.3e-87 325.1 239 72.4
ATR0661G148 Amborella trichopoda HOM05D005703 ORTHO05D006643 1.6e-86 323.6 230 71.3
Glyma.11G112900 Glycine max HOM05D005703 ORTHO05D006643 1.6e-86 323.6 252 69.8
CANSAT11G2682 Cannabis sativa HOM05D005703 ORTHO05D006643 2.0e-86 323.2 224 76.8
Prupe.8G088000 Prunus persica HOM05D005703 ORTHO05D006643 4.5e-86 322.0 237 73.0
VMungo1127G0812 Vigna mungo HOM05D005703 ORTHO05D006643 4.5e-86 322.0 218 77.1
Lalb_Chr03g0025421 Lupinus albus HOM05D005703 ORTHO05D006643 7.7e-86 321.2 221 76.9
MSTRG.20056 Avicennia marina HOM05D005703 ORTHO05D006643 1.0e-85 320.9 234 72.2
Gorai.008G031500 Gossypium raimondii HOM05D005703 ORTHO05D006643 1.7e-85 320.1 238 71.4
Solyc01g110160.4 Solanum lycopersicum HOM05D005703 ORTHO05D006643 2.2e-85 319.7 229 72.9
Sopen01g052320 Solanum pennellii HOM05D005703 ORTHO05D006643 2.2e-85 319.7 210 78.1
THA.LOC104824803 Tarenaya hassleriana HOM05D005703 ORTHO05D006643 2.9e-85 319.3 229 69.9
PSO170G4951 Papaver somniferum HOM05D005703 ORTHO05D006643 3.8e-85 318.9 234 71.8
CARHR112270 Cardamine hirsuta HOM05D005703 ORTHO05D006643 6.5e-85 318.2 221 71.5
ECA234G1754 Erigeron canadensis HOM05D005703 ORTHO05D006643 6.5e-85 318.2 260 66.9
Thecc.02G078100 Theobroma cacao HOM05D005703 ORTHO05D006643 6.5e-85 318.2 232 73.7
Ciclev10028680m.g Citrus clementina HOM05D005703 ORTHO05D006643 1.1e-84 317.4 264 67.0
MELO3C013421.2 Cucumis melo HOM05D005703 ORTHO05D006643 1.5e-84 317.0 263 69.6
Glyma.12G038800 Glycine max HOM05D005703 ORTHO05D006643 1.9e-84 316.6 218 75.2
Aa31LG7G15130 Aethionema arabicum HOM05D005703 ORTHO05D001153 3.2e-84 315.8 221 72.4
COL.COLO4_26014 Corchorus olitorius HOM05D005703 ORTHO05D006643 5.5e-84 315.1 230 72.2
Eucgr.D00178 Eucalyptus grandis HOM05D005703 ORTHO05D006643 1.2e-83 313.9 207 77.8
HanXRQChr12g0373591 Helianthus annuus HOM05D005703 ORTHO05D006643 1.2e-83 313.9 243 70.0
Lj3g0017018 Lotus japonicus HOM05D005703 ORTHO05D006643 2.7e-83 312.8 210 75.2
Medtr4g071190 Medicago truncatula HOM05D005703 ORTHO05D006643 2.7e-83 312.8 219 73.5
PGSC0003DMG400030971 Solanum tuberosum HOM05D005703 ORTHO05D006643 8.0e-83 311.2 220 74.5
Ca_20918_v3 Cicer arietinum L. HOM05D005703 ORTHO05D006643 1.0e-82 310.8 258 66.3
Carub.0004s0043 Capsella rubella HOM05D005703 ORTHO05D006643 1.4e-82 310.5 221 71.0
Sp4g00560 Schrenkiella parvula HOM05D005703 ORTHO05D006643 1.4e-82 310.5 221 71.9
Peaxi162Scf00016g00231 Petunia axillaris HOM05D005703 ORTHO05D006643 1.8e-82 310.1 218 75.2
Migut.B00193 Erythranthe guttata HOM05D005703 ORTHO05D006643 3.0e-82 309.3 205 77.6
TPR.G16235 Trifolium pratense HOM05D005703 ORTHO05D006643 5.2e-82 308.5 217 72.8
AL4G10560 Arabidopsis lyrata HOM05D005703 ORTHO05D006643 6.7e-82 308.1 221 69.7
AT2G21385 Arabidopsis thaliana HOM05D005703 ORTHO05D006643 8.8e-82 307.8 221 69.7
FAN15G0097 Fragaria x ananassa HOM05D005703 ORTHO05D006643 1.2e-81 307.4 307 59.0
Rhsim05G0069500 Rhododendron simsii HOM05D005703 ORTHO05D006643 5.7e-81 305.1 214 73.4
Psat7g139960 Pisum sativum HOM05D005703 ORTHO05D006643 4.8e-80 302.0 219 73.5
arahy.Tifrunner.gnm1.ann1.YBLQ63 Arachis hypogaea HOM05D005703 ORTHO05D006643 6.3e-80 301.6 211 74.9
Sc14g0002020 Simmondsia chinensis HOM05D005703 ORTHO05D006643 6.3e-80 301.6 207 75.4
CDE09G1081 Ceratophyllum demersum HOM05D005703 ORTHO05D006643 1.1e-79 300.8 259 62.9
arahy.Tifrunner.gnm1.ann1.R55P3J Arachis hypogaea HOM05D005703 ORTHO05D006643 1.8e-79 300.1 211 74.9
BraA09t41216Z Brassica rapa HOM05D005703 ORTHO05D006643 2.4e-79 299.7 238 66.8
A09p58290 Brassica napus HOM05D005703 ORTHO05D006643 3.1e-79 299.3 237 66.7
BolC8t51720H Brassica oleracea HOM05D005703 ORTHO05D006643 1.6e-78 297.0 224 70.5
C08p41580 Brassica napus HOM05D005703 ORTHO05D006643 3.5e-78 295.8 223 70.0
AUR62010417 Chenopodium quinoa HOM05D005703 ORTHO05D006643 7.7e-78 294.7 253 65.2
AUR62016798 Chenopodium quinoa HOM05D005703 ORTHO05D006643 1.0e-77 294.3 268 62.7
HPP92_025877 Vanilla planifolia HOM05D005703 ORTHO05D006643 1.9e-76 290.0 206 71.8
Nitab4.5_0011132g0020 Nicotiana tabacum HOM05D005703 ORTHO05D006643 4.2e-76 288.9 216 71.3
Os09g0531100 Oryza sativa ssp. japonica HOM05D005703 ORTHO05D006643 7.2e-76 288.1 207 69.6
Haze_02308 Corylus avellana HOM05D005703 ORTHO05D006643 1.4e-74 283.9 235 68.5
Phvul.011G040900 Phaseolus vulgaris HOM05D005703 ORTHO05D006643 3.4e-73 279.3 184 76.6
Zm00001eb353590 Zea mays HOM05D005703 ORTHO05D006643 1.4e-71 273.9 244 59.8
Thhalv10000241m.g Eutrema salsugineum HOM05D005703 ORTHO05D006643 4.1e-71 272.3 181 75.1
SalBow6G5125 Salvia bowleyana HOM05D005703 ORTHO05D006643 3.0e-66 256.1 229 63.8
Hma1.2p1_0066F.1_g035920 Hydrangea macrophylla HOM05D005703 ORTHO05D006643 2.6e-65 253.1 211 66.4
Gohir.A12G041600 Gossypium hirsutum HOM05D005703 ORTHO05D006643 4.4e-65 252.3 162 79.0
SGA_v2.0_scaffold58G20483 Striga asiatica HOM05D005703 ORTHO05D006643 3.1e-63 246.1 208 64.4
DCAR_022931 Daucus carota HOM05D005703 ORTHO05D006643 4.5e-62 242.3 252 59.5
Nitab4.5_0002723g0090 Nicotiana tabacum HOM05D005703 ORTHO05D006643 2.3e-61 240.0 213 63.4
EL10Ac9g21670 Beta vulgaris HOM05D005703 ORTHO05D006643 5.0e-61 238.8 253 55.7
AagrBONN_evm.TU.Sc2ySwM_228.378 Anthoceros agrestis HOM05D005703 ORTHO05D006643 3.6e-59 232.6 205 61.5
Mapoly0084s0041 Marchantia polymorpha HOM05D005703 ORTHO05D006643 1.4e-58 230.7 268 48.5
Pp3c22_4620 Physcomitrium patens HOM05D005703 ORTHO05D006643 2.6e-57 226.5 218 55.0
Thhalv10005656m.g Eutrema salsugineum HOM05D005703 ORTHO05D006643 7.5e-57 224.9 156 72.4
vmacro17444 Vaccinium macrocarpon HOM05D005703 ORTHO05D006643 2.2e-56 223.4 232 55.6
SMO356G0671 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 2.9e-56 223.0 227 53.3
FAN27G2042 Fragaria x ananassa HOM05D005703 ORTHO05D006643 1.8e-55 220.3 254 53.1
FAN24G3327 Fragaria x ananassa HOM05D005703 ORTHO05D006643 9.2e-55 218.0 254 52.4
FAN20G2472 Fragaria x ananassa HOM05D005703 ORTHO05D006643 3.5e-54 216.1 254 52.4
SMO290G0004 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 4.6e-54 215.7 208 56.2
SMO290G0013 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 4.6e-54 215.7 185 60.5
Lj5C191G8 Lonicera japonica HOM05D005703 ORTHO05D006643 6.0e-54 215.3 228 57.9
Hund00227 Selenicereus undatus HOM05D005703 ORTHO05D006643 1.5e-52 210.7 257 49.0
SMO356G0278 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 6.8e-50 201.8 187 58.8
Cc02_g17090 Coffea canephora HOM05D005703 ORTHO05D006643 8.9e-50 201.4 132 78.8
BcaB06g27102 Brassica carinata HOM05D005703 ORTHO05D006643 2.0e-46 190.3 169 62.1
unitig_0.g54 Utricularia gibba HOM05D005703 ORTHO05D006643 1.3e-45 187.6 125 76.0
MBI01_g29867_MAGBIO Magnolia biondii HOM05D005703 ORTHO05D006643 1.1e-44 184.5 115 81.7
BraA01t01909Z Brassica rapa HOM05D005703 ORTHO05D006643 1.2e-43 181.0 136 70.6
BolC2t11489H Brassica oleracea HOM05D005703 ORTHO05D006643 5.4e-31 139.0 186 47.8
Duzib132G0736 Durio zibethinus HOM05D005703 ORTHO05D006643 8.7e-29 131.7 230 41.7
BcaC01g06448 Brassica carinata HOM05D005703 ORTHO05D006643 5.6e-28 129.0 137 56.2
C02p54250 Brassica napus HOM05D005703 ORTHO05D006643 6.2e-27 125.6 179 46.4
HanXRQChr14g0433731 Helianthus annuus HOM05D005703 ORTHO05D006643 1.4e-26 124.4 78 85.9
C01p09750 Brassica napus HOM05D005703 ORTHO05D006643 1.1e-23 114.8 145 50.3
Cc02_g17080 Coffea canephora HOM05D005703 ORTHO05D006643 4.2e-23 112.8 83 68.7
QL11p045598 Quercus lobata HOM05D005703 ORTHO05D006643 4.2e-23 112.8 69 79.7
unitig_0.g53 Utricularia gibba HOM05D005703 ORTHO05D006643 4.6e-22 109.4 72 75.0
BcaC04g19425 Brassica carinata HOM05D005703 ORTHO05D006643 1.0e-21 108.2 164 45.1
C04p21760 Brassica napus HOM05D005703 ORTHO05D006643 3.3e-20 103.2 147 45.6
C09p55850 Brassica napus HOM05D005703 ORTHO05D006643 5.6e-20 102.4 147 45.6
MBI01_g29866_MAGBIO Magnolia biondii HOM05D005703 ORTHO05D006643 5.6e-20 102.4 84 59.5
CBR_g49480 Chara braunii HOM05D005703 ORTHO05D006643 3.6e-19 99.8 151 37.1
Cre08.g372000 Chlamydomonas reinhardtii HOM05D005703 ORTHO05D006643 4.8e-19 99.4 185 34.6
BolC1t00937H Brassica oleracea HOM05D005703 ORTHO05D006643 5.3e-18 95.9 75 69.3
BolC4t23697H Brassica oleracea HOM05D005703 ORTHO05D006643 1.5e-17 94.4 154 42.2
BcaC09g52221 Brassica carinata HOM05D005703 ORTHO05D006643 4.5e-17 92.8 65 72.3
C03p15450 Brassica napus HOM05D005703 ORTHO05D006643 5.8e-17 92.4 146 41.1
Potri.009G121902 Populus trichocarpa HOM05D005703 ORTHO05D006643 7.6e-17 92.0 80 67.5
BolC1t00936H Brassica oleracea HOM05D005703 ORTHO05D006643 7.1e-15 85.5 65 66.2
C03p56740 Brassica napus HOM05D005703 ORTHO05D006643 2.1e-14 84.0 82 54.9
TAR381G1022 Trochodendron aralioides HOM05D005703 ORTHO05D006643 2.4e-10 70.5 92 47.8
PRCOL_00000952 Prasinoderma coloniale HOM05D005703 ORTHO05D006643 3.1e-10 70.1 163 30.1
Lsat_1_v5_gn_1_61800 Lactuca sativa HOM05D005428 ORTHO05D002547 4.0e-10 69.7 57 63.2
TAR381G0871 Trochodendron aralioides HOM05D005703 ORTHO05D006643 7.6e-09 65.5 61 55.7
Oeu037764.1 Olea europaea HOM05D005703 ORTHO05D006643 1.3e-08 64.7 35 82.9
AUR62033094 Chenopodium quinoa HOM05D005703 ORTHO05D006643 1.7e-08 64.3 34 85.3
C03p56750 Brassica napus HOM05D005703 ORTHO05D006643 4.9e-08 62.8 80 45.0
CAN.G878.5 Capsicum annuum HOM05D000269 ORTHO05D000216 7.1e-07 58.9 39 64.1


User provided reference genes

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