Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0007664 Sechium edule HOM05D002873 ORTHO05D002978 1.3e-15 85.9 66 100.0
Prupe.3G244200 Prunus persica HOM05D002873 ORTHO05D002978 1.7e-12 75.5 68 66.2
Prupe.3G244300 Prunus persica HOM05D002873 ORTHO05D002978 1.7e-12 75.5 68 66.2
Prupe.3G244600 Prunus persica HOM05D002873 ORTHO05D002978 1.7e-12 75.5 68 66.2
Sed0012567 Sechium edule HOM05D002873 ORTHO05D002978 2.3e-12 75.1 66 92.4
Prupe.3G244500 Prunus persica HOM05D002873 ORTHO05D002978 5.0e-12 73.9 68 64.7
Prupe.3G244100 Prunus persica HOM05D002873 ORTHO05D002978 8.6e-12 73.2 68 64.7
Prupe.3G244400 Prunus persica HOM05D002873 ORTHO05D002978 1.5e-11 72.4 68 63.2
RcHm_v2.0_Chr2g0164011 Rosa chinensis HOM05D002873 ORTHO05D002978 1.9e-11 72.0 68 82.4
MD17G1070100 Malus domestica HOM05D002873 ORTHO05D002978 5.6e-11 70.5 68 86.8
CsaV3_5G004610 Cucumis sativus L. HOM05D002873 ORTHO05D002978 3.6e-10 67.8 68 75.0
MELO3C022078.2 Cucumis melo HOM05D002873 ORTHO05D002978 8.0e-10 66.6 68 75.0
CsaV3_5G004620 Cucumis sativus L. HOM05D002873 ORTHO05D002978 8.0e-10 66.6 68 70.6
RcHm_v2.0_Chr2g0163991 Rosa chinensis HOM05D002873 ORTHO05D002978 1.0e-09 66.2 66 60.6
TWI34G1371 Tripterygium wilfordii HOM05D002873 ORTHO05D002978 2.3e-09 65.1 68 55.9
MELO3C005501.2 Cucumis melo HOM05D002873 ORTHO05D002978 3.1e-09 64.7 68 80.9
Sabra04G0074500 Salix brachista HOM05D002873 ORTHO05D002978 3.1e-09 64.7 68 79.4
THA.LOC109117084 Tarenaya hassleriana HOM05D002873 ORTHO05D002978 4.0e-09 64.3 61 59.0
FAN02G0494 Fragaria x ananassa HOM05D002873 ORTHO05D002978 5.2e-09 63.9 65 66.2
FAN05G4367 Fragaria x ananassa HOM05D002873 ORTHO05D002978 5.2e-09 63.9 66 75.8
Sed0018450 Sechium edule HOM05D002873 ORTHO05D002978 5.2e-09 63.9 68 76.5
Sabra04G0074600 Salix brachista HOM05D002873 ORTHO05D002978 6.8e-09 63.5 68 75.0
CsaV3_5G038880 Cucumis sativus L. HOM05D002873 ORTHO05D002978 8.9e-09 63.2 68 67.6
Prupe.3G244700 Prunus persica HOM05D002873 ORTHO05D002978 8.9e-09 63.2 67 56.7
Cpa.g.sc188.26 Carica papaya HOM05D002873 ORTHO05D002978 1.5e-08 62.4 69 68.1
Potri.017G108300 Populus trichocarpa HOM05D002873 ORTHO05D002978 1.5e-08 62.4 68 72.1
Potri.017G108350 Populus trichocarpa HOM05D002873 ORTHO05D002978 1.5e-08 62.4 68 72.1
Thecc.04G146000 Theobroma cacao HOM05D002873 ORTHO05D002978 2.0e-08 62.0 68 80.9
Cc00_g21590 Coffea canephora HOM05D002873 ORTHO05D002978 2.6e-08 61.6 66 80.3
MELO3C005500.2 Cucumis melo HOM05D002873 ORTHO05D002978 2.6e-08 61.6 68 72.1
FvH4_6g45802 Fragaria vesca HOM05D002873 ORTHO05D002978 2.6e-08 61.6 33 93.9
FAN05G0873 Fragaria x ananassa HOM05D002873 ORTHO05D002978 2.6e-08 61.6 33 93.9
Sed0008680 Sechium edule HOM05D002873 ORTHO05D002978 2.6e-08 61.6 61 62.3
Sed0018699 Sechium edule HOM05D002873 ORTHO05D002978 2.6e-08 61.6 68 73.5
Sed0026500 Sechium edule HOM05D002873 ORTHO05D002978 2.6e-08 61.6 33 93.9
Haze_14075 Corylus avellana HOM05D002873 ORTHO05D002978 3.4e-08 61.2 68 54.4
MD09G1079600 Malus domestica HOM05D002873 ORTHO05D002978 3.4e-08 61.2 68 55.9
Potri.017G108400 Populus trichocarpa HOM05D002873 ORTHO05D002978 4.4e-08 60.8 68 67.6
Sed0026183 Sechium edule HOM05D002873 ORTHO05D002978 4.4e-08 60.8 68 66.2
Sc11g0008050 Simmondsia chinensis HOM05D002873 ORTHO05D002978 4.4e-08 60.8 66 68.2
Lalb_Chr04g0258251 Lupinus albus HOM05D002873 ORTHO05D002978 5.8e-08 60.5 64 56.2
Nitab4.5_0015566g0010 Nicotiana tabacum HOM05D002873 ORTHO05D002978 5.8e-08 60.5 58 86.2
Atru.chr10.1869 Acer truncatum HOM05D002873 ORTHO05D002978 7.5e-08 60.1 61 86.9
Potri.004G107500 Populus trichocarpa HOM05D002873 ORTHO05D002978 7.5e-08 60.1 68 79.4
Sp6g15890 Schrenkiella parvula HOM05D002873 ORTHO05D002978 7.5e-08 60.1 66 69.7
CsaV3_5G038870 Cucumis sativus L. HOM05D002873 ORTHO05D002978 9.8e-08 59.7 33 90.9
FAN09G4825 Fragaria x ananassa HOM05D002873 ORTHO05D002978 9.8e-08 59.7 33 90.9
Actinidia26314 Actinidia chinensis HOM05D002873 ORTHO05D002978 1.3e-07 59.3 66 68.2
Ca_20748_v3 Cicer arietinum L. HOM05D002873 ORTHO05D002978 1.3e-07 59.3 65 81.5
MELO3C033537.2 Cucumis melo HOM05D002873 ORTHO05D002978 1.3e-07 59.3 33 90.9
BcaB08g35740 Brassica carinata HOM05D002873 ORTHO05D002978 1.7e-07 58.9 68 73.5
Cfa020560 Carpinus fangiana HOM05D002873 ORTHO05D002978 1.7e-07 58.9 61 54.1
C09p43800 Brassica napus HOM05D002873 ORTHO05D002978 2.2e-07 58.5 60 76.7
BolC9t57265H Brassica oleracea HOM05D002873 ORTHO05D002978 2.2e-07 58.5 60 76.7
Ca_06717_v3 Cicer arietinum L. HOM05D002873 ORTHO05D002978 2.2e-07 58.5 62 56.5
MELO3C022079.2 Cucumis melo HOM05D002873 ORTHO05D002978 2.2e-07 58.5 31 93.5
Glyma.19G040000 Glycine max HOM05D002873 ORTHO05D002978 2.2e-07 58.5 58 79.3
PGR042G3018 Punica granatum HOM05D002873 ORTHO05D002978 2.2e-07 58.5 61 77.0
Carub.0008s1411 Capsella rubella HOM05D002873 ORTHO05D002978 2.9e-07 58.2 61 68.9
Thhalv10015216m.g Eutrema salsugineum HOM05D002873 ORTHO05D002978 2.9e-07 58.2 68 69.1
arahy.Tifrunner.gnm1.ann1.4T36CH Arachis hypogaea HOM05D002873 ORTHO05D002978 3.7e-07 57.8 65 53.8
arahy.Tifrunner.gnm1.ann1.JTM1YJ Arachis hypogaea HOM05D002873 ORTHO05D002978 3.7e-07 57.8 65 53.8
Eucgr.I02095 Eucalyptus grandis HOM05D002873 ORTHO05D002978 3.7e-07 57.8 68 60.3
A10p11190 Brassica napus HOM05D002873 ORTHO05D002978 4.9e-07 57.4 60 75.0
AL8G28870 Arabidopsis lyrata HOM05D002873 ORTHO05D002978 6.4e-07 57.0 60 75.0
A02p10830 Brassica napus HOM05D002873 ORTHO05D002978 6.4e-07 57.0 60 50.0
BraA02t06145Z Brassica rapa HOM05D002873 ORTHO05D002978 6.4e-07 57.0 60 50.0
Migut.H00561 Erythranthe guttata HOM05D002873 ORTHO05D002978 8.3e-07 56.6 66 69.7
Solyc02g065640.3 Solanum lycopersicum HOM05D002873 ORTHO05D002978 8.3e-07 56.6 66 74.2
BraA10t43210Z Brassica rapa HOM05D002873 ORTHO05D002978 1.1e-06 56.2 60 71.7
Migut.N00991 Erythranthe guttata HOM05D002873 ORTHO05D002978 1.1e-06 56.2 66 80.3
FAN14G0065 Fragaria x ananassa HOM05D003981 ORTHO05D003666 1.1e-06 56.2 30 93.3
THA.LOC109116088 Tarenaya hassleriana HOM05D002873 ORTHO05D002978 1.1e-06 56.2 61 60.7
vmacro18088 Vaccinium macrocarpon HOM05D002873 ORTHO05D002978 1.1e-06 56.2 60 81.7
THA.LOC109116670 Tarenaya hassleriana HOM05D002873 ORTHO05D002978 1.4e-06 55.8 33 84.8
AT5G53820 Arabidopsis thaliana HOM05D002873 ORTHO05D002978 1.9e-06 55.5 60 70.0
BcaC03g14385 Brassica carinata HOM05D002873 ORTHO05D002978 1.9e-06 55.5 60 48.3
C02p17950 Brassica napus HOM05D002873 ORTHO05D002978 1.9e-06 55.5 60 48.3
BolC2t07926H Brassica oleracea HOM05D002873 ORTHO05D002978 1.9e-06 55.5 60 48.3
MELO3C022081.2 Cucumis melo HOM05D002873 ORTHO05D002978 1.9e-06 55.5 34 91.2
Lalb_Chr04g0258241 Lupinus albus HOM05D002873 ORTHO05D015153 1.9e-06 55.5 61 75.4
Peaxi162Scf00479g00423 Petunia axillaris HOM05D002873 ORTHO05D002978 1.9e-06 55.5 66 66.7
Peaxi162Scf00479g00427 Petunia axillaris HOM05D002873 ORTHO05D002978 1.9e-06 55.5 61 75.4
Migut.N00988 Erythranthe guttata HOM05D002873 ORTHO05D002978 2.4e-06 55.1 66 77.3
Solyc02g089570.3 Solanum lycopersicum HOM05D002873 ORTHO05D002978 2.4e-06 55.1 66 69.7
Sopen02g015850 Solanum pennellii HOM05D002873 ORTHO05D002978 2.4e-06 55.1 66 72.7
CARHR266960 Cardamine hirsuta HOM05D002873 ORTHO05D002978 3.2e-06 54.7 60 75.0
Thhalv10028020m.g Eutrema salsugineum HOM05D002873 ORTHO05D002978 3.2e-06 54.7 68 70.6
Glyma.18G278600 Glycine max HOM05D002873 ORTHO05D002978 3.2e-06 54.7 62 67.7
Nitab4.5_0012845g0030 Nicotiana tabacum HOM05D002873 ORTHO05D002978 3.2e-06 54.7 59 78.0
A03p32950 Brassica napus HOM05D002873 ORTHO05D002978 4.1e-06 54.3 67 58.2
BraA03t12463Z Brassica rapa HOM05D002873 ORTHO05D002978 4.1e-06 54.3 67 58.2
Dinv33895 Davidia involucrata HOM05D002873 ORTHO05D002978 4.1e-06 54.3 66 59.1
Lalb_Chr06g0174781 Lupinus albus HOM05D002873 ORTHO05D002978 4.1e-06 54.3 65 80.0
Sc11g0008060 Simmondsia chinensis HOM05D002873 ORTHO05D002978 4.1e-06 54.3 65 67.7
Solyc02g082990.4 Solanum lycopersicum HOM05D002873 ORTHO05D002978 5.4e-06 53.9 68 60.3
THA.LOC109116986 Tarenaya hassleriana HOM05D002873 ORTHO05D002978 5.4e-06 53.9 61 65.6
FAN05G2856 Fragaria x ananassa HOM05D040180 ORTHO05D035606 7.0e-06 53.5 61 78.7
Sopen02g027770 Solanum pennellii HOM05D002873 ORTHO05D002978 7.0e-06 53.5 66 59.1
Potri.004G107600 Populus trichocarpa HOM05D002873 ORTHO05D002978 9.2e-06 53.1 68 70.6
PGSC0003DMG400001534 Solanum tuberosum HOM05D002873 ORTHO05D002978 9.2e-06 53.1 66 59.1


User provided reference genes

Program Settings