Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0007636 Sechium edule HOM05D005120 ORTHO05D006174 2.4e-279 964.9 512 100.0
MELO3C026723.2 Cucumis melo HOM05D005120 ORTHO05D006174 2.1e-227 792.3 530 81.5
ClCG07G002270 Citrullus lanatus HOM05D005120 ORTHO05D006174 2.4e-226 788.9 532 82.5
CsaV3_3G030430 Cucumis sativus L. HOM05D005120 ORTHO05D006174 2.6e-225 785.4 531 82.5
Sed0003941 Sechium edule HOM05D005120 ORTHO05D006174 3.4e-225 785.0 522 82.8
CiPaw.11G101100 Carya illinoinensis HOM05D005120 ORTHO05D006174 8.2e-203 710.7 493 77.5
Manes.17G006500 Manihot esculenta HOM05D005120 ORTHO05D006174 8.5e-200 700.7 467 79.0
MD06G1023600 Malus domestica HOM05D005120 ORTHO05D006174 5.5e-199 698.0 491 77.4
Cfa012552 Carpinus fangiana HOM05D005120 ORTHO05D006174 9.4e-199 697.2 494 76.3
QL12p000342 Quercus lobata HOM05D005120 ORTHO05D006174 3.6e-198 695.3 445 81.1
Prupe.5G024500 Prunus persica HOM05D005120 ORTHO05D006174 1.8e-197 693.0 528 73.7
Duzib205G1724 Durio zibethinus HOM05D005120 ORTHO05D006174 2.6e-196 689.1 533 69.6
Nitab4.5_0000543g0120 Nicotiana tabacum HOM05D005120 ORTHO05D006174 2.6e-196 689.1 450 81.1
CANSAT21G0750 Cannabis sativa HOM05D005120 ORTHO05D006174 9.1e-194 680.6 461 79.0
Eucgr.E01259 Eucalyptus grandis HOM05D005120 ORTHO05D006174 9.1e-194 680.6 457 78.6
Potri.003G099600 Populus trichocarpa HOM05D005120 ORTHO05D006174 2.7e-193 679.1 474 75.9
PGR042G0860 Punica granatum HOM05D005120 ORTHO05D006174 2.7e-193 679.1 493 74.0
Cpa.g.sc757.1 Carica papaya HOM05D005120 ORTHO05D006174 3.5e-193 678.7 486 73.9
Solyc08g076290.3 Solanum lycopersicum HOM05D005120 ORTHO05D006174 1.0e-192 677.2 450 79.1
Sopen08g024900 Solanum pennellii HOM05D005120 ORTHO05D006174 1.0e-192 677.2 450 79.1
BcaC05g27233 Brassica carinata HOM05D005120 ORTHO05D006174 1.3e-192 676.8 505 72.7
FAN04G0205 Fragaria x ananassa HOM05D005120 ORTHO05D006174 1.7e-192 676.4 511 73.2
BraA09t38958Z Brassica rapa HOM05D005120 ORTHO05D006174 2.2e-192 676.0 468 76.5
Carub.0001s3040 Capsella rubella HOM05D005120 ORTHO05D006174 2.9e-192 675.6 512 71.9
FvH4_5g23540 Fragaria vesca HOM05D005120 ORTHO05D006174 5.0e-192 674.9 444 81.3
Gorai.003G186700 Gossypium raimondii HOM05D005120 ORTHO05D006174 5.0e-192 674.9 485 72.8
THA.LOC104798500 Tarenaya hassleriana HOM05D005120 ORTHO05D006174 5.0e-192 674.9 488 73.0
Thhalv10007389m.g Eutrema salsugineum HOM05D005120 ORTHO05D006174 6.5e-192 674.5 435 80.7
TWI60G0565 Tripterygium wilfordii HOM05D005120 ORTHO05D006174 6.5e-192 674.5 445 78.7
C05p31470 Brassica napus HOM05D005120 ORTHO05D006174 8.5e-192 674.1 505 72.3
BolC5t31871H Brassica oleracea HOM05D005120 ORTHO05D006174 8.5e-192 674.1 505 72.3
Lj4g0011317 Lotus japonicus HOM05D005120 ORTHO05D006174 8.5e-192 674.1 437 81.0
Thecc.03G314000 Theobroma cacao HOM05D005120 ORTHO05D006174 8.5e-192 674.1 466 75.1
CARHR031430 Cardamine hirsuta HOM05D005120 ORTHO05D006174 1.1e-191 673.7 513 72.3
Cc08_g03980 Coffea canephora HOM05D005120 ORTHO05D006174 1.1e-191 673.7 507 71.8
FAN08G2640 Fragaria x ananassa HOM05D005120 ORTHO05D006174 1.1e-191 673.7 511 73.2
FAN18G1216 Fragaria x ananassa HOM05D005120 ORTHO05D006174 1.1e-191 673.7 444 81.1
Gohir.D03G177466 Gossypium hirsutum HOM05D005120 ORTHO05D006174 1.1e-191 673.7 485 72.8
Medtr8g070830 Medicago truncatula HOM05D005120 ORTHO05D006174 1.1e-191 673.7 438 80.8
AT1G32080 Arabidopsis thaliana HOM05D005120 ORTHO05D006174 1.5e-191 673.3 461 77.0
Glyma.16G095100 Glycine max HOM05D005120 ORTHO05D006174 1.5e-191 673.3 438 79.9
Lalb_Chr16g0391911 Lupinus albus HOM05D005120 ORTHO05D006174 1.5e-191 673.3 521 72.6
FAN18G2593 Fragaria x ananassa HOM05D005120 ORTHO05D006174 2.5e-191 672.5 444 80.9
RcHm_v2.0_Chr7g0212851 Rosa chinensis HOM05D005120 ORTHO05D006174 2.5e-191 672.5 512 72.7
AL1G46150 Arabidopsis lyrata HOM05D005120 ORTHO05D006174 3.2e-191 672.2 486 74.3
Gohir.A03G000018 Gossypium hirsutum HOM05D005120 ORTHO05D006174 3.2e-191 672.2 481 73.4
COL.COLO4_16896 Corchorus olitorius HOM05D005120 ORTHO05D006174 7.2e-191 671.0 456 77.2
PGSC0003DMG402009291 Solanum tuberosum HOM05D005120 ORTHO05D006174 9.4e-191 670.6 434 80.4
GSVIVG01029984001 Vitis vinifera HOM05D005120 ORTHO05D006174 1.6e-190 669.8 438 81.1
Aa31LG2G13920 Aethionema arabicum HOM05D005120 ORTHO05D006174 2.1e-190 669.5 467 75.4
arahy.Tifrunner.gnm1.ann1.H9FFKJ Arachis hypogaea HOM05D005120 ORTHO05D006174 2.1e-190 669.5 445 78.7
Sabra03G0067700 Salix brachista HOM05D005120 ORTHO05D006174 6.1e-190 667.9 460 77.4
BcaC05g27930 Brassica carinata HOM05D005120 ORTHO05D006174 1.4e-189 666.8 511 71.2
Haze_08107 Corylus avellana HOM05D005120 ORTHO05D006174 1.8e-189 666.4 550 68.5
SGA_v2.0_scaffold42G16013 Striga asiatica HOM05D005120 ORTHO05D006174 4.0e-189 665.2 434 79.0
Sp1g27750 Schrenkiella parvula HOM05D005120 ORTHO05D006174 5.2e-189 664.8 509 70.9
TAR374G0846 Trochodendron aralioides HOM05D005120 ORTHO05D006174 1.2e-188 663.7 486 73.9
BcaB03g13768 Brassica carinata HOM05D005120 ORTHO05D006174 1.5e-188 663.3 467 75.6
Psat4g111760 Pisum sativum HOM05D005120 ORTHO05D006174 2.0e-188 662.9 437 80.3
BraA05t21413Z Brassica rapa HOM05D005120 ORTHO05D006174 2.6e-188 662.5 511 70.5
Phvul.003G274000 Phaseolus vulgaris HOM05D005120 ORTHO05D006174 4.4e-188 661.8 520 70.6
VMungo0251G1066 Vigna mungo HOM05D005120 ORTHO05D006174 4.4e-188 661.8 522 70.3
Nitab4.5_0006395g0010 Nicotiana tabacum HOM05D005120 ORTHO05D006174 7.5e-188 661.0 421 82.4
Nn1g01918 Nelumbo nucifera HOM05D005120 ORTHO05D006174 2.2e-187 659.4 484 74.0
Dinv29029 Davidia involucrata HOM05D005120 ORTHO05D006174 1.8e-186 656.4 431 79.6
Peaxi162Scf00408g00023 Petunia axillaris HOM05D005120 ORTHO05D006174 3.1e-186 655.6 451 77.4
arahy.Tifrunner.gnm1.ann1.PMQ83Q Arachis hypogaea HOM05D005120 ORTHO05D006174 5.4e-186 654.8 438 78.3
Migut.A00586 Erythranthe guttata HOM05D005120 ORTHO05D006174 5.4e-186 654.8 492 70.9
TPR.G6179 Trifolium pratense HOM05D005120 ORTHO05D006174 9.1e-186 654.1 472 74.8
Rhsim11G0027600 Rhododendron simsii HOM05D005120 ORTHO05D006174 1.6e-185 653.3 520 69.2
Sc07g0008440 Simmondsia chinensis HOM05D005120 ORTHO05D006174 2.0e-185 652.9 440 76.6
Atru.chr6.1569 Acer truncatum HOM05D005120 ORTHO05D006174 5.9e-185 651.4 445 76.2
MBI04_g36023_MAGBIO Magnolia biondii HOM05D005120 ORTHO05D006174 1.0e-184 650.6 437 79.2
Aqoxy7G00879 Aquilegia oxysepala HOM05D005120 ORTHO05D006174 1.3e-184 650.2 489 72.2
BcaB07g32869 Brassica carinata HOM05D005120 ORTHO05D006174 2.9e-184 649.0 437 78.5
MSTRG.11896 Avicennia marina HOM05D005120 ORTHO05D006174 5.0e-184 648.3 529 67.5
Actinidia27272 Actinidia chinensis HOM05D005120 ORTHO05D006174 1.5e-183 646.7 512 68.8
SalBow1G1967 Salvia bowleyana HOM05D005120 ORTHO05D006174 1.9e-183 646.4 448 75.4
C05p39360 Brassica napus HOM05D005120 ORTHO05D006174 3.2e-183 645.6 497 71.2
BolC5t32672H Brassica oleracea HOM05D005120 ORTHO05D006174 3.2e-183 645.6 497 71.2
Aa31LG2G11060 Aethionema arabicum HOM05D005120 ORTHO05D006174 9.4e-183 644.0 433 76.4
Lsat_1_v5_gn_6_17781 Lactuca sativa HOM05D005120 ORTHO05D006174 1.2e-182 643.7 488 71.7
Oeu042231.1 Olea europaea HOM05D005120 ORTHO05D006174 1.2e-182 643.7 480 71.5
Ah.07g201110 Amaranthus hybridus HOM05D005120 ORTHO05D006174 3.6e-182 642.1 519 66.9
Ca_22546_v3 Cicer arietinum L. HOM05D005120 ORTHO05D006174 3.6e-182 642.1 404 82.7
A05p25290 Brassica napus HOM05D005120 ORTHO05D006174 4.7e-182 641.7 497 70.6
Lj8A318T44 Lonicera japonica HOM05D005120 ORTHO05D006174 1.8e-181 639.8 511 69.9
CAN.G773.16 Capsicum annuum HOM05D005120 ORTHO05D006174 6.8e-181 637.9 518 68.1
vmacro00236 Vaccinium macrocarpon HOM05D005120 ORTHO05D006174 1.2e-180 637.1 430 78.1
Glyma.01G009900 Glycine max HOM05D005120 ORTHO05D006174 9.8e-180 634.0 452 73.7
SGA_v2.0_scaffold89G27426 Striga asiatica HOM05D005120 ORTHO05D006174 1.3e-179 633.6 437 76.9
AUR62018612 Chenopodium quinoa HOM05D005120 ORTHO05D006174 3.7e-179 632.1 536 65.3
A09p34100 Brassica napus HOM05D005120 ORTHO05D006174 6.3e-179 631.3 440 75.9
HanXRQChr02g0050021 Helianthus annuus HOM05D005120 ORTHO05D006174 6.3e-179 631.3 499 69.1
Glyma.09G211200 Glycine max HOM05D005120 ORTHO05D006174 5.4e-178 628.2 453 73.1
PSO717G0011 Papaver somniferum HOM05D005120 ORTHO05D006174 1.0e-176 624.0 525 67.4
Phvul.002G132800 Phaseolus vulgaris HOM05D005120 ORTHO05D006174 1.3e-176 623.6 455 72.7
AUR62007376 Chenopodium quinoa HOM05D005120 ORTHO05D006174 2.9e-176 622.5 404 78.2
Hund14388 Selenicereus undatus HOM05D005120 ORTHO05D006174 3.8e-176 622.1 455 72.1
CDE06G0533 Ceratophyllum demersum HOM05D005120 ORTHO05D006174 1.5e-175 620.2 438 74.2
PSO675G2578 Papaver somniferum HOM05D005120 ORTHO05D006174 1.2e-174 617.1 524 67.2
ATR0829G037 Amborella trichopoda HOM05D005120 ORTHO05D006174 1.6e-174 616.7 453 73.5
EL10Ac5g11981 Beta vulgaris HOM05D005120 ORTHO05D006174 2.8e-174 615.9 519 64.5
Os01g0511600 Oryza sativa ssp. japonica HOM05D005120 ORTHO05D006174 8.0e-174 614.4 429 74.1
Nn3g19343 Nelumbo nucifera HOM05D005120 ORTHO05D006174 4.4e-172 608.6 486 67.5
Lalb_Chr16g0380871 Lupinus albus HOM05D005120 ORTHO05D006174 5.4e-170 601.7 426 72.8
ECA233G2235 Erigeron canadensis HOM05D005120 ORTHO05D006174 7.0e-170 601.3 421 75.8
Hund11160 Selenicereus undatus HOM05D005120 ORTHO05D006174 1.3e-168 597.0 512 64.1
Zm00001eb025160 Zea mays HOM05D005120 ORTHO05D006174 9.5e-167 590.9 441 70.7
unitig_747.g21935 Utricularia gibba HOM05D005120 ORTHO05D006174 6.6e-160 568.2 465 66.9
DCAR_004262 Daucus carota HOM05D005120 ORTHO05D006174 1.1e-159 567.4 436 69.5
Atru.chr6.1566 Acer truncatum HOM05D005120 ORTHO05D006174 9.5e-159 564.3 514 64.0
CSS0018999 Camellia sinensis var. sinensis HOM05D005120 ORTHO05D006174 9.5e-159 564.3 443 71.1
arahy.Tifrunner.gnm1.ann1.1W9K9Y Arachis hypogaea HOM05D005120 ORTHO05D006174 8.9e-149 531.2 448 64.1
arahy.Tifrunner.gnm1.ann1.5B6WJ4 Arachis hypogaea HOM05D005120 ORTHO05D006174 8.9e-149 531.2 448 64.1
AagrBONN_evm.TU.Sc2ySwM_117.3701 Anthoceros agrestis HOM05D005120 ORTHO05D006174 5.2e-141 505.4 439 60.4
Pp3c1_16500 Physcomitrium patens HOM05D005120 ORTHO05D006174 4.3e-135 485.7 430 59.5
Mapoly0008s0007 Marchantia polymorpha HOM05D005120 ORTHO05D006174 4.8e-134 482.3 440 58.4
Actinidia01339 Actinidia chinensis HOM05D005120 ORTHO05D006174 1.0e-128 464.5 376 69.1
Ciclev10003461m.g Citrus clementina HOM05D005120 ORTHO05D006174 5.5e-122 442.2 350 68.0
SMO347G0341 Selaginella moellendorffii HOM05D005120 ORTHO05D006174 4.6e-121 439.1 367 62.4
Dinv06901 Davidia involucrata HOM05D005120 ORTHO05D006174 3.7e-118 429.5 342 67.5
Atru.chr6.1568 Acer truncatum HOM05D005120 ORTHO05D006174 1.8e-104 384.0 230 86.5
PRCOL_00000663 Prasinoderma coloniale HOM05D005120 ORTHO05D006174 4.5e-100 369.4 442 47.5
Lalb_Chr16g0380881 Lupinus albus HOM05D005120 ORTHO05D006174 5.0e-91 339.3 427 48.7
Cre09.g394850 Chlamydomonas reinhardtii HOM05D005120 ORTHO05D006174 5.5e-82 309.3 457 41.6
Atru.chr6.1567 Acer truncatum HOM05D005120 ORTHO05D006174 6.7e-80 302.4 284 59.9
FAN13G2921 Fragaria x ananassa HOM05D005120 ORTHO05D006174 1.8e-77 294.3 359 52.9
Glyma.08G265967 Glycine max HOM05D005120 ORTHO05D006174 5.7e-71 272.7 167 86.8
SMO367G1009 Selaginella moellendorffii HOM05D005120 ORTHO05D006174 1.1e-69 268.5 384 39.3
CANSAT64G2484 Cannabis sativa HOM05D005120 ORTHO05D006174 1.3e-67 261.5 156 89.1
Pp3c4_7680 Physcomitrium patens HOM05D005120 ORTHO05D006174 2.0e-63 247.7 397 36.0
Zm00001eb025140 Zea mays HOM05D005120 ORTHO05D006174 5.7e-63 246.1 245 56.3
AagrBONN_evm.TU.Sc2ySwM_368.2516 Anthoceros agrestis HOM05D005120 ORTHO05D006174 1.1e-58 231.9 376 36.7
PRCOL_00006607 Prasinoderma coloniale HOM05D005120 ORTHO05D006174 2.2e-54 217.6 452 35.8
arahy.Tifrunner.gnm1.ann1.B01XES Arachis hypogaea HOM05D005120 ORTHO05D006174 1.2e-52 211.8 252 50.8
CBR_g23155 Chara braunii HOM05D005120 ORTHO05D006174 1.2e-52 211.8 162 67.3
PGR044G1750 Punica granatum HOM05D005120 ORTHO05D006174 9.2e-37 159.1 122 69.7
SEGI_09610 Sequoiadendron giganteum HOM05D005120 ORTHO05D006174 6.0e-36 156.4 124 63.7
SEGI_28661 Sequoiadendron giganteum HOM05D005120 ORTHO05D006174 1.1e-29 135.6 122 60.7
CARHR291910 Cardamine hirsuta HOM05D005120 ORTHO05D006174 2.1e-28 131.3 86 74.4
CBR_g23153 Chara braunii HOM05D005120 ORTHO05D006174 2.1e-28 131.3 162 48.1
VMungo0647G0996 Vigna mungo HOM05D005120 ORTHO05D006174 9.0e-24 115.9 98 67.3
MCO13G610 Micromonas commoda HOM05D005120 ORTHO05D006174 1.1e-21 109.0 382 25.9
Oeu023967.3 Olea europaea HOM05D005120 ORTHO05D006174 9.3e-21 105.9 151 45.0
PRCOL_00001036 Prasinoderma coloniale HOM05D001145 ORTHO05D014381 3.9e-11 73.9 427 24.8
CDE03G0049 Ceratophyllum demersum HOM05D005120 ORTHO05D006174 1.1e-08 65.9 67 59.7
PRCOL_00005007 Prasinoderma coloniale HOM05D013059 ORTHO05D014381 3.1e-08 64.3 356 24.7


User provided reference genes

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