Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0007617 Sechium edule HOM05D003513 ORTHO05D004660 2.1e-108 396.0 243 100.0
ClCG02G003790 Citrullus lanatus HOM05D003513 ORTHO05D004660 2.5e-80 302.8 198 82.8
MELO3C013317.2 Cucumis melo HOM05D003513 ORTHO05D004660 2.5e-77 292.7 198 80.8
CsaV3_7G001360 Cucumis sativus L. HOM05D003513 ORTHO05D004660 5.3e-75 285.0 198 78.8
MD05G1110900 Malus domestica HOM05D003513 ORTHO05D004660 1.9e-56 223.4 204 61.3
Prupe.8G155900 Prunus persica HOM05D003513 ORTHO05D004660 7.2e-56 221.5 205 62.4
FAN20G2897 Fragaria x ananassa HOM05D003513 ORTHO05D004660 1.1e-53 214.2 202 59.4
FAN24G3528 Fragaria x ananassa HOM05D003513 ORTHO05D004660 2.6e-53 213.0 205 60.0
Manes.07G049900 Manihot esculenta HOM05D003513 ORTHO05D004660 2.6e-53 213.0 199 61.8
Atru.chr4.2879 Acer truncatum HOM05D003513 ORTHO05D004660 3.3e-53 212.6 196 60.7
FAN15G2646 Fragaria x ananassa HOM05D003513 ORTHO05D004660 5.7e-53 211.8 202 58.9
TWI14G0477 Tripterygium wilfordii HOM05D003513 ORTHO05D004660 7.4e-53 211.5 208 58.7
RcHm_v2.0_Chr6g0247131 Rosa chinensis HOM05D003513 ORTHO05D004660 2.2e-52 209.9 202 58.9
Thecc.02G033900 Theobroma cacao HOM05D003513 ORTHO05D004660 4.8e-52 208.8 199 60.8
FvH4_2g02710 Fragaria vesca HOM05D003513 ORTHO05D004660 8.2e-52 208.0 203 57.6
TWI23G0398 Tripterygium wilfordii HOM05D003513 ORTHO05D004660 8.2e-52 208.0 207 58.5
Actinidia02426 Actinidia chinensis HOM05D003513 ORTHO05D004660 1.4e-51 207.2 205 60.5
CSS0016653 Camellia sinensis var. sinensis HOM05D003513 ORTHO05D004660 2.4e-51 206.5 214 59.3
Actinidia00338 Actinidia chinensis HOM05D003513 ORTHO05D004660 4.1e-51 205.7 205 59.5
FAN27G0638 Fragaria x ananassa HOM05D003513 ORTHO05D004660 4.1e-51 205.7 202 57.9
Sabra09G0063800 Salix brachista HOM05D003513 ORTHO05D004660 2.0e-50 203.4 204 57.8
vmacro01922 Vaccinium macrocarpon HOM05D003513 ORTHO05D004660 4.5e-50 202.2 206 58.3
Cc02_g20350 Coffea canephora HOM05D003513 ORTHO05D004660 5.9e-50 201.8 202 58.9
COL.COLO4_17824 Corchorus olitorius HOM05D003513 ORTHO05D004660 5.9e-50 201.8 205 57.6
Duzib052G1139 Durio zibethinus HOM05D003513 ORTHO05D004660 5.9e-50 201.8 207 58.0
Cfa003376 Carpinus fangiana HOM05D003513 ORTHO05D004660 1.0e-49 201.1 196 60.2
GSVIVG01036987001 Vitis vinifera HOM05D003513 ORTHO05D004660 1.0e-49 201.1 204 58.8
Cfa004752 Carpinus fangiana HOM05D003513 ORTHO05D004660 1.3e-49 200.7 199 61.3
Eucgr.I02512 Eucalyptus grandis HOM05D003513 ORTHO05D004660 2.2e-49 199.9 200 58.5
Oeu010478.1 Olea europaea HOM05D003513 ORTHO05D004660 8.5e-49 198.0 209 57.9
Potri.009G082200 Populus trichocarpa HOM05D003513 ORTHO05D004660 1.1e-48 197.6 204 57.4
CANSAT11G1387 Cannabis sativa HOM05D003513 ORTHO05D004660 1.5e-48 197.2 201 61.2
Duzib248G1448 Durio zibethinus HOM05D003513 ORTHO05D004660 1.5e-48 197.2 202 58.4
Gorai.005G262600 Gossypium raimondii HOM05D003513 ORTHO05D004660 1.5e-48 197.2 205 55.6
Ciclev10028868m.g Citrus clementina HOM05D003513 ORTHO05D004660 1.9e-48 196.8 199 56.3
Hma1.2p1_0661F.1_g197860 Hydrangea macrophylla HOM05D003513 ORTHO05D004660 1.9e-48 196.8 209 56.5
Gohir.A03G213100 Gossypium hirsutum HOM05D003513 ORTHO05D004660 3.2e-48 196.1 206 57.3
Gohir.D02G234600 Gossypium hirsutum HOM05D003513 ORTHO05D004660 3.2e-48 196.1 199 56.3
Lj9A339T51 Lonicera japonica HOM05D003513 ORTHO05D004660 4.2e-48 195.7 203 56.2
Rhsim11G0147300 Rhododendron simsii HOM05D003513 ORTHO05D004660 9.4e-48 194.5 226 54.0
Dinv17746 Davidia involucrata HOM05D003513 ORTHO05D004660 1.2e-47 194.1 197 58.9
CiPaw.16G055200 Carya illinoinensis HOM05D003513 ORTHO05D004660 2.7e-47 193.0 203 60.1
ECA236G2279 Erigeron canadensis HOM05D003513 ORTHO05D004660 6.1e-47 191.8 207 58.5
TAR375G0591 Trochodendron aralioides HOM05D003513 ORTHO05D004660 8.0e-47 191.4 215 55.3
EL10Ac4g09206 Beta vulgaris HOM05D003513 ORTHO05D004660 1.8e-46 190.3 211 53.6
Potri.001G287900 Populus trichocarpa HOM05D003513 ORTHO05D004660 3.0e-46 189.5 171 63.7
Lsat_1_v5_gn_7_84220 Lactuca sativa HOM05D003513 ORTHO05D004660 3.9e-46 189.1 207 57.0
Oeu059873.1 Olea europaea HOM05D003513 ORTHO05D004660 3.9e-46 189.1 206 55.8
MBI18_g04900_MAGBIO Magnolia biondii HOM05D003513 ORTHO05D004660 6.7e-46 188.3 203 56.2
DCAR_029853 Daucus carota HOM05D003513 ORTHO05D004660 8.8e-46 188.0 237 50.2
Lj6g0027000 Lotus japonicus HOM05D003513 ORTHO05D004660 8.8e-46 188.0 236 50.0
Medtr2g010510 Medicago truncatula HOM05D003513 ORTHO05D004660 3.3e-45 186.0 202 56.4
Ca_00197_v3 Cicer arietinum L. HOM05D000871 ORTHO05D000770 7.4e-45 184.9 197 54.8
PGR042G0778 Punica granatum HOM05D003513 ORTHO05D004660 2.2e-44 183.3 200 56.5
Solyc01g106560.4 Solanum lycopersicum HOM05D003513 ORTHO05D004660 2.8e-44 183.0 203 56.2
CiPaw.05G024600 Carya illinoinensis HOM05D003513 ORTHO05D004660 3.7e-44 182.6 203 57.6
MBI18_g12443_MAGBIO Magnolia biondii HOM05D003513 ORTHO05D004660 8.2e-44 181.4 208 53.4
QL11p027784 Quercus lobata HOM05D003513 ORTHO05D004660 1.1e-43 181.0 199 54.3
PSO339G4304 Papaver somniferum HOM05D003513 ORTHO05D004660 1.4e-43 180.6 200 55.5
Sopen01g048910 Solanum pennellii HOM05D003513 ORTHO05D004660 1.4e-43 180.6 208 54.3
Peaxi162Scf00016g03328 Petunia axillaris HOM05D003513 ORTHO05D004660 2.4e-43 179.9 209 54.1
Lalb_Chr18g0060191 Lupinus albus HOM05D003513 ORTHO05D004660 3.1e-43 179.5 249 47.8
PSO384G0236 Papaver somniferum HOM05D003513 ORTHO05D004660 3.1e-43 179.5 200 56.0
PGSC0003DMG400005104 Solanum tuberosum HOM05D003513 ORTHO05D004660 3.1e-43 179.5 207 53.6
MSTRG.8971 Avicennia marina HOM05D003513 ORTHO05D004660 4.1e-43 179.1 214 51.9
Glyma.15G062000 Glycine max HOM05D003513 ORTHO05D004660 5.3e-43 178.7 244 49.2
MD10G1114400 Malus domestica HOM05D003513 ORTHO05D004660 7.0e-43 178.3 181 55.8
arahy.Tifrunner.gnm1.ann1.2E8PRH Arachis hypogaea HOM05D003513 ORTHO05D004660 1.6e-42 177.2 237 48.5
arahy.Tifrunner.gnm1.ann1.K4QFJX Arachis hypogaea HOM05D003513 ORTHO05D004660 2.0e-42 176.8 237 48.1
MSTRG.8970 Avicennia marina HOM05D003513 ORTHO05D004660 2.0e-42 176.8 214 50.9
SGA_v2.0_scaffold32G12967 Striga asiatica HOM05D003513 ORTHO05D004660 2.0e-42 176.8 206 53.4
Nn4g22684 Nelumbo nucifera HOM05D003513 ORTHO05D004660 2.6e-42 176.4 171 59.6
arahy.Tifrunner.gnm1.ann1.SQB86K Arachis hypogaea HOM05D003513 ORTHO05D004660 4.5e-42 175.6 237 46.4
Lj6g0027758 Lotus japonicus HOM05D003513 ORTHO05D004660 4.5e-42 175.6 209 52.6
SalBow6G6243 Salvia bowleyana HOM05D003513 ORTHO05D004660 4.5e-42 175.6 206 51.9
unitig_0.g631 Utricularia gibba HOM05D003513 ORTHO05D004660 3.8e-41 172.6 202 51.0
SHI04900 Sapria himalayana HOM05D003513 ORTHO05D004660 5.0e-41 172.2 175 56.0
Aa31LG8G12720 Aethionema arabicum HOM05D003513 ORTHO05D004660 6.5e-41 171.8 207 53.6
Psat1g212080 Pisum sativum HOM05D003513 ORTHO05D004660 8.5e-41 171.4 176 59.1
VMungo0540G2261 Vigna mungo HOM05D003513 ORTHO05D004660 8.5e-41 171.4 243 47.3
Sp3g05980 Schrenkiella parvula HOM05D003513 ORTHO05D004660 1.1e-40 171.0 207 54.1
THA.LOC104807196 Tarenaya hassleriana HOM05D003513 ORTHO05D004660 1.9e-40 170.2 199 55.3
Aqoxy5G03939 Aquilegia oxysepala HOM05D003513 ORTHO05D004660 5.5e-40 168.7 208 52.4
Glyma.13G253000 Glycine max HOM05D003513 ORTHO05D004660 3.6e-39 166.0 237 48.5
Lj1g0004946 Lotus japonicus HOM05D003513 ORTHO05D004660 8.0e-39 164.9 197 54.3
arahy.Tifrunner.gnm1.ann1.C4ZNB5 Arachis hypogaea HOM05D003513 ORTHO05D004660 1.0e-38 164.5 242 46.3
HanXRQChr17g0550541 Helianthus annuus HOM05D003513 ORTHO05D004660 1.4e-38 164.1 196 51.5
Atru.chr5.2163 Acer truncatum HOM05D003513 ORTHO05D004660 8.8e-38 161.4 149 62.4
Zm00001eb325060 Zea mays HOM05D003513 ORTHO05D004660 1.2e-37 161.0 193 48.2
Os07g0213400 Oryza sativa ssp. japonica HOM05D003513 ORTHO05D004660 1.5e-37 160.6 197 49.2
AL3G45960 Arabidopsis lyrata HOM05D003513 ORTHO05D004660 4.4e-37 159.1 200 51.0
C03p42610 Brassica napus HOM05D003513 ORTHO05D004660 4.4e-37 159.1 202 53.0
BcaC09g52179 Brassica carinata HOM05D003513 ORTHO05D004660 5.7e-37 158.7 171 56.1
BolC1t00484H Brassica oleracea HOM05D003513 ORTHO05D004660 5.7e-37 158.7 171 56.1
Dinv03362 Davidia involucrata HOM05D003513 ORTHO05D004660 5.7e-37 158.7 153 60.8
AL7G17790 Arabidopsis lyrata HOM05D003513 ORTHO05D004660 9.7e-37 157.9 171 57.3
Carub.0003s2847 Capsella rubella HOM05D003513 ORTHO05D004660 9.7e-37 157.9 202 52.0
AUR62005013 Chenopodium quinoa HOM05D003513 ORTHO05D004660 1.3e-36 157.5 193 51.3
HPP92_011751 Vanilla planifolia HOM05D003513 ORTHO05D004660 1.3e-36 157.5 208 47.1
CDE04G2077 Ceratophyllum demersum HOM05D000016 ORTHO05D000538 1.1e-35 154.5 197 48.7
C01p05020 Brassica napus HOM05D003513 ORTHO05D004660 3.1e-35 152.9 171 55.6
A03p35030 Brassica napus HOM05D003513 ORTHO05D004660 7.0e-35 151.8 200 50.5
Sp7g31420 Schrenkiella parvula HOM05D003513 ORTHO05D004660 2.7e-34 149.8 211 48.8
Cpa.g.sc20.72 Carica papaya HOM05D003513 ORTHO05D004660 4.5e-34 149.1 149 57.7
Sabra16G0180200 Salix brachista HOM05D003513 ORTHO05D004660 4.5e-34 149.1 222 46.8
BcaB07g32937 Brassica carinata HOM05D003513 ORTHO05D004660 5.9e-34 148.7 171 53.8
BraA03t12683Z Brassica rapa HOM05D003513 ORTHO05D004660 5.9e-34 148.7 199 49.7
ATR0681G195 Amborella trichopoda HOM05D003513 ORTHO05D004660 2.9e-33 146.4 251 41.0
BraA01t00446Z Brassica rapa HOM05D003513 ORTHO05D004660 3.8e-33 146.0 178 52.8
BolC3t16531H Brassica oleracea HOM05D003513 ORTHO05D004660 1.1e-32 144.4 197 51.8
AUR62000955 Chenopodium quinoa HOM05D003513 ORTHO05D004660 1.1e-32 144.4 193 47.2
AT4G33690 Arabidopsis thaliana HOM05D003513 ORTHO05D004660 3.2e-32 142.9 174 52.9
A01p04630 Brassica napus HOM05D003513 ORTHO05D004660 9.4e-32 141.4 173 52.6
CDE07G1727 Ceratophyllum demersum HOM05D003513 ORTHO05D004660 1.6e-31 140.6 228 42.5
Mapoly0037s0029 Marchantia polymorpha HOM05D003513 ORTHO05D004660 6.1e-31 138.7 182 51.1
SEGI_16177 Sequoiadendron giganteum HOM05D003513 ORTHO05D004660 1.0e-30 137.9 244 40.6
HPP92_025257 Vanilla planifolia HOM05D003513 ORTHO05D004660 3.4e-29 132.9 169 46.7
BraA01t02793Z Brassica rapa HOM05D004336 ORTHO05D004660 5.7e-29 132.1 226 45.1
Carub.0007s0673 Capsella rubella HOM05D003513 ORTHO05D004660 5.7e-29 132.1 151 54.3
BcaC04g20358 Brassica carinata HOM05D003513 ORTHO05D004660 1.1e-27 127.9 189 46.0
Nitab4.5_0001477g0150 Nicotiana tabacum HOM05D003513 ORTHO05D004660 9.1e-27 124.8 204 44.6
Pp3c17_21630 Physcomitrium patens HOM05D003513 ORTHO05D004660 3.5e-26 122.9 189 42.3
AagrBONN_evm.TU.Sc2ySwM_289.2 Anthoceros agrestis HOM05D003513 ORTHO05D004660 1.0e-25 121.3 196 41.3
AagrBONN_evm.TU.Sc2ySwM_362.2667 Anthoceros agrestis HOM05D003513 ORTHO05D004660 1.0e-25 121.3 196 41.3
Hund24144 Selenicereus undatus HOM05D003513 ORTHO05D004660 1.0e-25 121.3 135 54.1
SMO119G0189 Selaginella moellendorffii HOM05D003513 ORTHO05D004660 2.3e-25 120.2 199 39.7
SEGI_38183 Sequoiadendron giganteum HOM05D003513 ORTHO05D004660 2.3e-25 120.2 227 38.8
Sc21g0000900 Simmondsia chinensis HOM05D003513 ORTHO05D004660 2.9e-25 119.8 147 50.3
A05p21550 Brassica napus HOM05D003513 ORTHO05D004660 3.8e-25 119.4 177 47.5
BraA05t21075Z Brassica rapa HOM05D003513 ORTHO05D004660 3.8e-25 119.4 177 47.5
TAR629G2534 Trochodendron aralioides HOM05D003513 ORTHO05D004660 5.2e-22 109.0 118 57.6
BcaB02g10961 Brassica carinata HOM05D003513 ORTHO05D004660 6.8e-22 108.6 85 69.4
A09p29610 Brassica napus HOM05D003513 ORTHO05D004660 8.9e-22 108.2 166 48.2
Eucgr.L02047 Eucalyptus grandis HOM05D003513 ORTHO05D004660 4.4e-21 105.9 135 48.1
BcaB04g17698 Brassica carinata HOM05D003513 ORTHO05D004660 5.7e-21 105.5 188 45.7
A04p04130 Brassica napus HOM05D003513 ORTHO05D004660 5.7e-21 105.5 163 47.2
Nitab4.5_0007763g0010 Nicotiana tabacum HOM05D003513 ORTHO05D004660 3.7e-20 102.8 151 48.3
BcaC08g44431 Brassica carinata HOM05D003513 ORTHO05D013524 6.3e-20 102.1 175 42.3
Glyma.07G229300 Glycine max HOM05D003513 ORTHO05D004660 8.3e-20 101.7 73 69.9
CAN.G192.6 Capsicum annuum HOM05D003513 ORTHO05D004660 1.0e-17 94.7 157 43.9
BraA03t15374Z Brassica rapa HOM05D003513 ORTHO05D004660 2.3e-17 93.6 163 43.6
Migut.B00497 Erythranthe guttata HOM05D003513 ORTHO05D004660 5.0e-17 92.4 141 44.7
A08p11320 Brassica napus HOM05D003513 ORTHO05D004660 6.6e-17 92.0 63 73.0
A10p16400 Brassica napus HOM05D003513 ORTHO05D004660 6.6e-17 92.0 63 73.0
C06p15560 Brassica napus HOM05D003513 ORTHO05D004660 6.6e-17 92.0 63 73.0
C08p23080 Brassica napus HOM05D003513 ORTHO05D004660 6.6e-17 92.0 63 73.0
A09p33590 Brassica napus HOM05D003513 ORTHO05D004660 4.3e-16 89.4 56 80.4
C06p18710 Brassica napus HOM05D003513 ORTHO05D004660 4.3e-16 89.4 58 75.9
CARHR105270 Cardamine hirsuta HOM05D003513 ORTHO05D004660 7.3e-16 88.6 137 46.0
A03p61430 Brassica napus HOM05D003513 ORTHO05D004660 1.2e-15 87.8 56 78.6
A03p66860 Brassica napus HOM05D003513 ORTHO05D004660 1.6e-15 87.4 75 58.7
BraA09t38150Z Brassica rapa HOM05D003513 ORTHO05D004660 2.8e-15 86.7 75 62.7
Gohir.A01G179633 Gossypium hirsutum HOM05D003513 ORTHO05D004660 3.1e-14 83.2 51 78.4
BolC8t52234H Brassica oleracea HOM05D003513 ORTHO05D004660 3.4e-13 79.7 161 41.6
Zm00001eb303370 Zea mays HOM05D003513 ORTHO05D004660 4.4e-13 79.3 132 40.9
TPR.G22787 Trifolium pratense HOM05D003513 ORTHO05D004660 5.8e-13 79.0 136 45.6
Gorai.002G212100 Gossypium raimondii HOM05D003513 ORTHO05D004660 7.5e-13 78.6 51 76.5
C01p31670 Brassica napus HOM05D003513 ORTHO05D015800 9.8e-13 78.2 54 72.2
C08p46960 Brassica napus HOM05D003513 ORTHO05D013524 3.7e-12 76.3 161 41.0
Phvul.006G197800 Phaseolus vulgaris HOM05D003513 ORTHO05D004660 1.1e-11 74.7 182 36.3
Thhalv10021452m.g Eutrema salsugineum HOM05D003513 ORTHO05D004660 1.4e-11 74.3 129 44.2
TWI59G0638 Tripterygium wilfordii HOM05D003513 ORTHO05D004660 3.2e-11 73.2 78 53.8
A05p23280 Brassica napus HOM05D003513 ORTHO05D004660 9.2e-11 71.6 46 76.1
BraA05t21192Z Brassica rapa HOM05D003513 ORTHO05D004660 9.2e-11 71.6 46 76.1
BcaB05g23799 Brassica carinata HOM05D003513 ORTHO05D004660 2.5e-08 63.5 123 40.7
TAR636G1841 Trochodendron aralioides HOM05D003513 ORTHO05D004660 5.6e-08 62.4 88 45.5
MCO09G316 Micromonas commoda HOM05D003513 ORTHO05D004660 1.2e-07 61.2 176 30.1
Cre13.g575366 Chlamydomonas reinhardtii HOM05D003513 ORTHO05D139674 3.1e-06 56.6 86 43.0
C09p21920 Brassica napus HOM05D001670 ORTHO05D015800 4.0e-06 56.2 50 60.0
BolC1t03102H Brassica oleracea HOM05D003531 ORTHO05D015800 6.8e-06 55.5 38 68.4


User provided reference genes

Program Settings