Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0007600 Sechium edule HOM05D005283 ORTHO05D006769 0.0e+00 1737.2 860 100.0
ClCG05G006140 Citrullus lanatus HOM05D005283 ORTHO05D006769 0.0e+00 1526.1 866 88.5
CsaV3_3G014700 Cucumis sativus L. HOM05D005283 ORTHO05D006769 0.0e+00 1520.4 869 87.0
MELO3C006668.2 Cucumis melo HOM05D005283 ORTHO05D006769 0.0e+00 1481.5 894 83.7
MD13G1167900 Malus domestica HOM05D005283 ORTHO05D006769 0.0e+00 1269.2 866 73.6
Prupe.1G135400 Prunus persica HOM05D005283 ORTHO05D006769 0.0e+00 1268.1 872 73.7
Cfa015392 Carpinus fangiana HOM05D005283 ORTHO05D006769 0.0e+00 1267.3 878 72.7
QL06p009017 Quercus lobata HOM05D005283 ORTHO05D006769 0.0e+00 1265.0 889 71.3
MD08G1066800 Malus domestica HOM05D005283 ORTHO05D006769 0.0e+00 1255.7 862 73.2
Haze_01194 Corylus avellana HOM05D005283 ORTHO05D006769 0.0e+00 1246.5 884 71.4
Thecc.04G285400 Theobroma cacao HOM05D005283 ORTHO05D006769 0.0e+00 1238.8 886 71.3
CSS0043341 Camellia sinensis var. sinensis HOM05D005283 ORTHO05D006769 0.0e+00 1233.4 854 71.5
RcHm_v2.0_Chr4g0422381 Rosa chinensis HOM05D005283 ORTHO05D006769 0.0e+00 1224.2 875 70.5
CANSAT78G0446 Cannabis sativa HOM05D005283 ORTHO05D006769 0.0e+00 1219.1 878 70.0
Dinv29746 Davidia involucrata HOM05D005283 ORTHO05D006769 0.0e+00 1216.8 875 70.5
Nn3g21453 Nelumbo nucifera HOM05D005283 ORTHO05D006769 0.0e+00 1214.5 878 70.5
CiPaw.01G148000 Carya illinoinensis HOM05D005283 ORTHO05D006769 0.0e+00 1211.4 869 70.3
Potri.010G014000 Populus trichocarpa HOM05D005283 ORTHO05D006769 0.0e+00 1208.7 860 71.2
TWI09G0775 Tripterygium wilfordii HOM05D005283 ORTHO05D006769 0.0e+00 1208.0 878 70.3
Ciclev10004285m.g Citrus clementina HOM05D005283 ORTHO05D006769 0.0e+00 1204.9 880 70.0
FAN12G1245 Fragaria x ananassa HOM05D005283 ORTHO05D006769 0.0e+00 1201.4 859 70.4
FAN12G0573 Fragaria x ananassa HOM05D005283 ORTHO05D006769 0.0e+00 1199.5 859 70.4
TWI53G1858 Tripterygium wilfordii HOM05D005283 ORTHO05D006769 0.0e+00 1198.0 877 70.2
FvH4_4g18240 Fragaria vesca HOM05D005283 ORTHO05D006769 0.0e+00 1194.5 859 70.2
Dinv44377 Davidia involucrata HOM05D005283 ORTHO05D006769 0.0e+00 1185.2 852 70.4
TAR362G0604 Trochodendron aralioides HOM05D005283 ORTHO05D006769 0.0e+00 1176.4 916 65.9
MBI18_g13696_MAGBIO Magnolia biondii HOM05D005283 ORTHO05D006769 0.0e+00 1176.0 880 68.6
vmacro08159 Vaccinium macrocarpon HOM05D005283 ORTHO05D006769 0.0e+00 1175.2 923 65.4
Duzib151G1199 Durio zibethinus HOM05D005283 ORTHO05D006769 0.0e+00 1162.5 858 69.5
PGR031G1610 Punica granatum HOM05D005283 ORTHO05D006769 0.0e+00 1149.4 886 67.8
Hma1.2p1_1185F.1_g265090 Hydrangea macrophylla HOM05D005283 ORTHO05D006769 0.0e+00 1149.0 877 68.1
arahy.Tifrunner.gnm1.ann1.Z6JJZG Arachis hypogaea HOM05D005283 ORTHO05D006769 0.0e+00 1148.7 888 66.8
arahy.Tifrunner.gnm1.ann1.PZAP36 Arachis hypogaea HOM05D005283 ORTHO05D006769 0.0e+00 1147.5 895 66.4
PSO170G5664 Papaver somniferum HOM05D005283 ORTHO05D006769 0.0e+00 1140.2 872 67.3
PSO210G5109 Papaver somniferum HOM05D005283 ORTHO05D006769 0.0e+00 1137.1 873 67.1
Glyma.07G247100 Glycine max HOM05D005283 ORTHO05D006769 0.0e+00 1132.5 860 67.7
Lalb_Chr18g0051671 Lupinus albus HOM05D005283 ORTHO05D006769 0.0e+00 1131.3 864 67.6
CAN.G185.38 Capsicum annuum HOM05D005283 ORTHO05D006769 0.0e+00 1125.5 853 66.8
Nitab4.5_0001120g0020 Nicotiana tabacum HOM05D005283 ORTHO05D006769 0.0e+00 1121.3 874 66.1
Gohir.D02G054700 Gossypium hirsutum HOM05D005283 ORTHO05D006769 0.0e+00 1119.4 848 68.0
Glyma.17G026900 Glycine max HOM05D005283 ORTHO05D006769 0.0e+00 1118.2 861 67.1
Gorai.005G060600 Gossypium raimondii HOM05D005283 ORTHO05D006769 0.0e+00 1117.8 848 67.9
DCAR_027073 Daucus carota HOM05D005283 ORTHO05D006769 0.0e+00 1112.4 857 66.2
Sopen01g032430 Solanum pennellii HOM05D005283 ORTHO05D006769 0.0e+00 1112.1 866 65.7
Gohir.A02G049600 Gossypium hirsutum HOM05D005283 ORTHO05D006769 0.0e+00 1109.4 848 67.6
Rhsim04G0223000 Rhododendron simsii HOM05D005283 ORTHO05D006769 0.0e+00 1109.4 1006 59.2
Solyc01g080620.3 Solanum lycopersicum HOM05D005283 ORTHO05D006769 0.0e+00 1108.6 866 65.6
Phvul.003G105900 Phaseolus vulgaris HOM05D005283 ORTHO05D006769 0.0e+00 1104.7 858 66.8
Sabra10G0008900 Salix brachista HOM05D005283 ORTHO05D006769 0.0e+00 1102.8 792 70.3
Ca_21491_v3 Cicer arietinum L. HOM05D005283 ORTHO05D006769 0.0e+00 1102.4 860 66.6
Atru.BG.90.p Acer truncatum HOM05D005283 ORTHO05D006769 0.0e+00 1099.7 839 67.0
Aqoxy2G02976 Aquilegia oxysepala HOM05D005283 ORTHO05D006769 0.0e+00 1094.3 841 66.8
VMungo1215G0467 Vigna mungo HOM05D005283 ORTHO05D006769 0.0e+00 1092.4 867 65.4
FAN17G2169 Fragaria x ananassa HOM05D005283 ORTHO05D006769 0.0e+00 1089.3 938 61.6
Peaxi162Scf01123g00233 Petunia axillaris HOM05D005283 ORTHO05D006769 0.0e+00 1083.9 854 64.9
Cc03_g01850 Coffea canephora HOM05D005283 ORTHO05D006769 0.0e+00 1082.0 858 64.8
Psat4g027360 Pisum sativum HOM05D005283 ORTHO05D006769 2.4e-311 1072.0 856 65.3
Medtr4g119960 Medicago truncatula HOM05D005283 ORTHO05D006769 1.2e-310 1069.7 881 64.8
TPR.G3193 Trifolium pratense HOM05D005283 ORTHO05D006769 3.8e-309 1064.7 944 60.8
Manes.03G195900 Manihot esculenta HOM05D005283 ORTHO05D006769 2.7e-307 1058.5 819 66.9
Lj4g0026758 Lotus japonicus HOM05D005283 ORTHO05D006769 6.0e-307 1057.4 858 64.1
Eucgr.B01324 Eucalyptus grandis HOM05D005283 ORTHO05D006769 7.9e-307 1057.0 812 67.7
Nitab4.5_0000059g0420 Nicotiana tabacum HOM05D005283 ORTHO05D006769 2.9e-301 1038.5 861 63.1
Migut.G00154 Erythranthe guttata HOM05D005283 ORTHO05D006769 1.1e-300 1036.6 883 61.4
HanXRQChr13g0411191 Helianthus annuus HOM05D005283 ORTHO05D006769 3.0e-298 1028.5 877 61.9
Sc25g0004780 Simmondsia chinensis HOM05D005283 ORTHO05D006769 7.4e-297 1023.8 873 62.4
THA.LOC104820270 Tarenaya hassleriana HOM05D005283 ORTHO05D006769 3.1e-295 1018.5 853 62.6
ATR0796G268 Amborella trichopoda HOM05D005283 ORTHO05D006769 4.6e-291 1004.6 879 60.8
AUR62041505 Chenopodium quinoa HOM05D005283 ORTHO05D006769 1.5e-289 999.6 875 61.4
MSTRG.3910 Avicennia marina HOM05D005283 ORTHO05D006769 1.3e-288 996.5 839 62.1
EL10Ac3g06605 Beta vulgaris HOM05D005283 ORTHO05D006769 6.5e-285 984.2 851 61.3
Ah.13g074630 Amaranthus hybridus HOM05D005283 ORTHO05D006769 7.9e-283 977.2 878 60.7
Lsat_1_v5_gn_5_54040 Lactuca sativa HOM05D005283 ORTHO05D006769 1.6e-280 969.5 866 59.5
ECA240G0403 Erigeron canadensis HOM05D005283 ORTHO05D006769 3.4e-278 961.8 821 61.4
Oeu029706.1 Olea europaea HOM05D005283 ORTHO05D000116 7.7e-278 960.7 860 59.8
AT4G15840 Arabidopsis thaliana HOM05D005283 ORTHO05D006769 3.1e-271 938.7 857 59.3
AL7G39450 Arabidopsis lyrata HOM05D005283 ORTHO05D006769 2.0e-270 936.0 861 58.5
Thhalv10024402m.g Eutrema salsugineum HOM05D005283 ORTHO05D006769 2.0e-270 936.0 852 58.8
SGA_v2.0_scaffold18G08298 Striga asiatica HOM05D005283 ORTHO05D006769 3.4e-270 935.3 882 58.2
Carub.0007s2581 Capsella rubella HOM05D005283 ORTHO05D006769 1.7e-269 932.9 856 58.3
Sp7g14240 Schrenkiella parvula HOM05D005283 ORTHO05D006769 2.5e-268 929.1 871 57.7
CARHR290370 Cardamine hirsuta HOM05D005283 ORTHO05D006769 3.5e-262 908.7 867 57.7
C07p47430 Brassica napus HOM05D005283 ORTHO05D006769 1.2e-259 900.2 853 57.7
BolC7t45270H Brassica oleracea HOM05D005283 ORTHO05D006769 1.2e-259 900.2 853 57.7
BcaC06g32968 Brassica carinata HOM05D005283 ORTHO05D006769 8.0e-259 897.5 869 57.4
A03p49360 Brassica napus HOM05D005283 ORTHO05D006769 3.0e-258 895.6 853 58.3
BraA03t14037Z Brassica rapa HOM05D005283 ORTHO05D006769 3.0e-258 895.6 853 58.0
CDE05G1280 Ceratophyllum demersum HOM05D005283 ORTHO05D006769 9.1e-255 884.0 856 56.7
BcaC06g33444 Brassica carinata HOM05D005283 ORTHO05D006769 3.6e-251 872.1 853 56.7
Os01g0932600 Oryza sativa ssp. japonica HOM05D005283 ORTHO05D006769 4.4e-249 865.1 843 56.8
Zm00001eb142310 Zea mays HOM05D005283 ORTHO05D006769 1.3e-245 853.6 857 54.4
Hund20553 Selenicereus undatus HOM05D005283 ORTHO05D006769 1.9e-244 849.7 773 59.6
CDE11G0961 Ceratophyllum demersum HOM05D005283 ORTHO05D006769 1.0e-237 827.4 851 54.5
Zm00001eb363540 Zea mays HOM05D005283 ORTHO05D006769 4.9e-224 781.9 782 54.9
COL.COLO4_13862 Corchorus olitorius HOM05D005283 ORTHO05D006769 1.7e-221 773.5 878 51.9
Hma1.2p1_2906F.1_g330120 Hydrangea macrophylla HOM05D005283 ORTHO05D006769 7.8e-214 748.0 787 55.0
HPP92_002145 Vanilla planifolia HOM05D005283 ORTHO05D006769 8.4e-208 728.0 719 55.9
Pp3c5_16090 Physcomitrium patens HOM05D005283 ORTHO05D006769 3.6e-195 686.0 925 46.4
GSVIVG01017732001 Vitis vinifera HOM05D005283 ORTHO05D006769 4.9e-192 675.6 526 66.0
Pp3c6_10590 Physcomitrium patens HOM05D005283 ORTHO05D006769 2.1e-190 670.2 920 45.1
Actinidia40275 Actinidia chinensis HOM05D005283 ORTHO05D006769 5.5e-175 619.0 398 75.1
Cpa.g.sc66.36 Carica papaya HOM05D005283 ORTHO05D006769 1.2e-174 617.8 617 53.2
Atru.chr4.2851 Acer truncatum HOM05D005283 ORTHO05D006769 1.2e-166 591.3 369 78.0
Pp3c16_9230 Physcomitrium patens HOM05D005283 ORTHO05D006769 3.1e-162 576.6 872 42.3
Lj6A677G73 Lonicera japonica HOM05D005283 ORTHO05D006769 3.3e-156 556.6 413 67.8
Actinidia40274 Actinidia chinensis HOM05D005283 ORTHO05D006769 4.8e-147 526.2 418 64.4
Lj6C677T9 Lonicera japonica HOM05D005283 ORTHO05D006769 7.0e-146 522.3 473 61.3
TAR633G1039 Trochodendron aralioides HOM05D005283 ORTHO05D006769 1.8e-138 497.7 388 66.8
AUR62042850 Chenopodium quinoa HOM05D005283 ORTHO05D006769 3.4e-108 397.1 502 47.4
TAR633G2729 Trochodendron aralioides HOM05D005283 ORTHO05D006769 2.4e-98 364.4 276 65.2
unitig_748.g8731 Utricularia gibba HOM05D005283 ORTHO05D006769 4.9e-91 340.1 373 52.3
GSVIVG01017731001 Vitis vinifera HOM05D005283 ORTHO05D006769 3.8e-83 313.9 175 84.6
SEGI_38162 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 8.4e-83 312.8 546 38.5
SEGI_40593 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 8.4e-83 312.8 546 38.5
Pp3c20_17000 Physcomitrium patens HOM05D005283 ORTHO05D006769 3.3e-79 300.8 362 47.8
unitig_748.g8730 Utricularia gibba HOM05D005283 ORTHO05D006769 5.8e-76 290.0 283 53.0
TAR633G1238 Trochodendron aralioides HOM05D005283 ORTHO05D006769 1.3e-75 288.9 151 90.1
PRCOL_00005501 Prasinoderma coloniale HOM05D005283 ORTHO05D006769 9.3e-74 282.7 851 29.5
Actinidia26773 Actinidia chinensis HOM05D005283 ORTHO05D006769 3.7e-70 270.8 282 55.3
HPP92_002144 Vanilla planifolia HOM05D005283 ORTHO05D006769 1.0e-64 252.7 137 87.6
FAN07G0879 Fragaria x ananassa HOM05D005283 ORTHO05D006769 5.6e-63 246.9 145 83.4
SEGI_08317 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 6.0e-57 226.9 172 64.5
SEGI_24032 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 1.1e-50 206.1 117 77.8
SEGI_35628 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 4.8e-46 190.7 227 44.5
Mapoly0037s0064 Marchantia polymorpha HOM05D005283 ORTHO05D006769 1.4e-40 172.6 220 40.9
AUR62006322 Chenopodium quinoa HOM05D007078 ORTHO05D008745 7.0e-37 160.2 186 51.1
MCO04G464 Micromonas commoda HOM05D005283 ORTHO05D006769 1.9e-26 125.6 270 31.5
BolC4t27184H Brassica oleracea HOM05D005283 ORTHO05D006769 7.2e-26 123.6 128 50.8
Cpa.g.sc66.37 Carica papaya HOM05D005283 ORTHO05D006769 9.4e-26 123.2 85 70.6
A04p20740 Brassica napus HOM05D005283 ORTHO05D006769 1.8e-24 119.0 161 41.0
C04p56580 Brassica napus HOM05D005283 ORTHO05D006769 6.8e-16 90.5 128 41.4
AUR62038887 Chenopodium quinoa HOM05D002461 ORTHO05D000898 8.8e-16 90.1 58 75.9
BcaC05g28381 Brassica carinata HOM05D005283 ORTHO05D021637 3.4e-15 88.2 58 65.5
AUR62005650 Chenopodium quinoa HOM05D002461 ORTHO05D000898 9.8e-15 86.7 55 76.4
AUR62010442 Chenopodium quinoa HOM05D002461 ORTHO05D000898 9.8e-15 86.7 55 76.4
AUR62011828 Chenopodium quinoa HOM05D002461 ORTHO05D000898 9.8e-15 86.7 55 76.4
AUR62024534 Chenopodium quinoa HOM05D002461 ORTHO05D000898 9.8e-15 86.7 55 76.4
AUR62024696 Chenopodium quinoa HOM05D002461 ORTHO05D000898 9.8e-15 86.7 55 76.4
AUR62029074 Chenopodium quinoa HOM05D002461 ORTHO05D000898 9.8e-15 86.7 55 76.4
AUR62031767 Chenopodium quinoa HOM05D002461 ORTHO05D000898 9.8e-15 86.7 55 76.4
AUR62033912 Chenopodium quinoa HOM05D002461 ORTHO05D000898 9.8e-15 86.7 55 76.4
AUR62035885 Chenopodium quinoa HOM05D002461 ORTHO05D000898 9.8e-15 86.7 55 76.4
AUR62035966 Chenopodium quinoa HOM05D002461 ORTHO05D000898 9.8e-15 86.7 55 76.4
AUR62002595 Chenopodium quinoa HOM05D002461 ORTHO05D000898 1.3e-14 86.3 55 76.4
BcaC02g08264 Brassica carinata HOM05D005283 ORTHO05D006769 1.2e-12 79.7 118 40.7
Cfa001632 Carpinus fangiana HOM05D005283 ORTHO05D006769 2.7e-12 78.6 210 27.6
HanXRQChr14g0449221 Helianthus annuus HOM05D005283 ORTHO05D006769 2.9e-11 75.1 64 56.2
HanXRQChr12g0372601 Helianthus annuus HOM05D005283 ORTHO05D006769 1.5e-10 72.8 61 57.4
Cpa.g.c37401 Carica papaya HOM05D005283 ORTHO05D006769 2.5e-10 72.0 33 90.9
HanXRQChr09g0244011 Helianthus annuus HOM05D005283 ORTHO05D006769 2.2e-06 58.9 71 42.3


User provided reference genes

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