Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0007566 Sechium edule HOM05D002388 ORTHO05D004745 5.6e-65 250.8 123 100.0
ClCG10G001380 Citrullus lanatus HOM05D002388 ORTHO05D004745 1.3e-24 116.7 195 44.1
CsaV3_3G001460 Cucumis sativus L. HOM05D002388 ORTHO05D004745 1.5e-22 109.8 195 41.5
Duzib205G0909 Durio zibethinus HOM05D002388 ORTHO05D004745 1.0e-18 97.1 200 37.5
CSS0030959 Camellia sinensis var. sinensis HOM05D002388 ORTHO05D004745 1.5e-17 93.2 204 37.3
QL12p001291 Quercus lobata HOM05D002388 ORTHO05D004745 4.3e-17 91.7 195 37.4
Cfa012512 Carpinus fangiana HOM05D002388 ORTHO05D004745 5.7e-17 91.3 188 37.8
Cfa021255 Carpinus fangiana HOM05D002388 ORTHO05D004745 5.7e-17 91.3 188 37.8
Dinv28990 Davidia involucrata HOM05D002388 ORTHO05D004745 5.7e-17 91.3 205 36.6
vmacro00293 Vaccinium macrocarpon HOM05D002388 ORTHO05D004745 5.7e-17 91.3 195 36.9
vmacro00300 Vaccinium macrocarpon HOM05D002388 ORTHO05D004745 5.7e-17 91.3 195 36.9
Actinidia03351 Actinidia chinensis HOM05D002388 ORTHO05D004745 7.4e-17 90.9 204 34.3
CiPaw.11G097400 Carya illinoinensis HOM05D002388 ORTHO05D004745 2.2e-16 89.4 199 37.2
Duzib068G1098 Durio zibethinus HOM05D002388 ORTHO05D004745 6.3e-16 87.8 202 37.1
Eucgr.E00235 Eucalyptus grandis HOM05D002388 ORTHO05D004745 6.3e-16 87.8 200 36.5
Cpa.g.sc90.11 Carica papaya HOM05D002388 ORTHO05D004745 1.1e-15 87.0 200 37.0
Dinv25247 Davidia involucrata HOM05D002388 ORTHO05D004745 1.1e-15 87.0 205 35.6
MSTRG.13744 Avicennia marina HOM05D002388 ORTHO05D004745 4.1e-15 85.1 192 35.4
Manes.15G188200 Manihot esculenta HOM05D002388 ORTHO05D004745 4.1e-15 85.1 198 36.4
FAN13G2852 Fragaria x ananassa HOM05D002388 ORTHO05D004745 6.9e-15 84.3 200 35.0
PGSC0003DMG400014808 Solanum tuberosum HOM05D002388 ORTHO05D004745 9.1e-15 84.0 196 36.7
Psat4g121840 Pisum sativum HOM05D002388 ORTHO05D004745 1.2e-14 83.6 197 36.0
COL.COLO4_16959 Corchorus olitorius HOM05D002388 ORTHO05D004745 1.5e-14 83.2 200 33.5
Solyc08g076510.3 Solanum lycopersicum HOM05D002388 ORTHO05D004745 1.5e-14 83.2 193 37.3
Sopen08g025090 Solanum pennellii HOM05D002388 ORTHO05D004745 1.5e-14 83.2 193 37.3
Ciclev10002623m.g Citrus clementina HOM05D002388 ORTHO05D004745 2.0e-14 82.8 183 37.2
FAN08G3109 Fragaria x ananassa HOM05D002388 ORTHO05D004745 2.6e-14 82.4 200 34.5
FAN18G3398 Fragaria x ananassa HOM05D002388 ORTHO05D004745 2.6e-14 82.4 200 34.5
FAN18G3813 Fragaria x ananassa HOM05D002388 ORTHO05D004745 2.6e-14 82.4 200 34.5
MD06G1025400 Malus domestica HOM05D002388 ORTHO05D004745 3.4e-14 82.0 199 34.7
Hma1.2p1_0572F.1_g181220 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 4.5e-14 81.6 203 35.5
Ciclev10002550m.g Citrus clementina HOM05D002388 ORTHO05D004745 5.9e-14 81.3 199 35.7
Gohir.A08G154400 Gossypium hirsutum HOM05D002388 ORTHO05D004745 5.9e-14 81.3 200 36.5
Haze_08151 Corylus avellana HOM05D002388 ORTHO05D004745 7.7e-14 80.9 214 33.2
Rhsim11G0019800 Rhododendron simsii HOM05D002388 ORTHO05D004745 7.7e-14 80.9 129 41.9
Thecc.03G308500 Theobroma cacao HOM05D002388 ORTHO05D004745 7.7e-14 80.9 202 35.1
FAN04G3082 Fragaria x ananassa HOM05D002388 ORTHO05D004745 1.0e-13 80.5 200 33.5
Cfa012514 Carpinus fangiana HOM05D002388 ORTHO05D004745 1.3e-13 80.1 201 35.3
Cfa012499 Carpinus fangiana HOM05D002388 ORTHO05D004745 1.7e-13 79.7 132 40.2
Ca_22658_v3 Cicer arietinum L. HOM05D002388 ORTHO05D004745 1.7e-13 79.7 197 35.0
FvH4_5g22890 Fragaria vesca HOM05D002388 ORTHO05D004745 1.7e-13 79.7 207 33.3
Gorai.004G182900 Gossypium raimondii HOM05D002388 ORTHO05D004745 2.2e-13 79.3 200 35.5
Ca_25190_v3 Cicer arietinum L. HOM05D002388 ORTHO05D004745 2.9e-13 79.0 199 34.7
Cc08_g03410 Coffea canephora HOM05D002388 ORTHO05D004745 3.8e-13 78.6 191 34.6
Gohir.D08G175075 Gossypium hirsutum HOM05D002388 ORTHO05D004745 5.0e-13 78.2 200 35.0
Lj2g0009669 Lotus japonicus HOM05D002388 ORTHO05D004745 5.0e-13 78.2 193 35.2
Rhsim07G0131100 Rhododendron simsii HOM05D002388 ORTHO05D004745 5.0e-13 78.2 173 37.6
Atru.chr6.1616 Acer truncatum HOM05D002388 ORTHO05D004745 8.5e-13 77.4 196 33.7
Nitab4.5_0001595g0030 Nicotiana tabacum HOM05D002388 ORTHO05D004745 8.5e-13 77.4 197 35.0
RcHm_v2.0_Chr7g0211591 Rosa chinensis HOM05D002388 ORTHO05D004745 8.5e-13 77.4 201 32.8
THA.LOC104814421 Tarenaya hassleriana HOM05D002388 ORTHO05D004745 8.5e-13 77.4 201 33.3
TWI15G0743 Tripterygium wilfordii HOM05D002388 ORTHO05D004745 8.5e-13 77.4 198 34.3
arahy.Tifrunner.gnm1.ann1.DQ9IRR Arachis hypogaea HOM05D002388 ORTHO05D004745 1.1e-12 77.0 199 35.2
arahy.Tifrunner.gnm1.ann1.JAYF1A Arachis hypogaea HOM05D002388 ORTHO05D004745 1.1e-12 77.0 199 35.2
THA.LOC104798489 Tarenaya hassleriana HOM05D002388 ORTHO05D004745 1.4e-12 76.6 196 31.6
Potri.003G095600 Populus trichocarpa HOM05D002388 ORTHO05D004745 1.9e-12 76.3 205 34.6
TPR.G3315 Trifolium pratense HOM05D002388 ORTHO05D004745 1.9e-12 76.3 197 35.5
EL10Ac5g12028 Beta vulgaris HOM05D002388 ORTHO05D004745 2.5e-12 75.9 206 33.0
Haze_08172 Corylus avellana HOM05D002388 ORTHO05D004745 2.5e-12 75.9 182 35.2
TPR.G8093 Trifolium pratense HOM05D002388 ORTHO05D004745 2.5e-12 75.9 199 34.2
Nitab4.5_0000529g0040 Nicotiana tabacum HOM05D002388 ORTHO05D004745 3.2e-12 75.5 197 34.5
Peaxi162Scf00170g00816 Petunia axillaris HOM05D002388 ORTHO05D004745 3.2e-12 75.5 197 33.5
MELO3C013831.2 Cucumis melo HOM05D002388 ORTHO05D004745 4.2e-12 75.1 101 47.5
CANSAT35G0066 Cannabis sativa HOM05D002388 ORTHO05D004745 7.2e-12 74.3 201 33.8
Haze_08150 Corylus avellana HOM05D002388 ORTHO05D004745 7.2e-12 74.3 148 38.5
Lalb_Chr16g0381151 Lupinus albus HOM05D002388 ORTHO05D004745 7.2e-12 74.3 199 33.2
Aa31LG2G13740 Aethionema arabicum HOM05D002388 ORTHO05D004745 9.4e-12 73.9 203 33.5
Prupe.5G029700 Prunus persica HOM05D002388 ORTHO05D004745 9.4e-12 73.9 195 33.8
Migut.E00774 Erythranthe guttata HOM05D002388 ORTHO05D004745 1.6e-11 73.2 189 33.9
TWI60G0128 Tripterygium wilfordii HOM05D002388 ORTHO05D004745 1.6e-11 73.2 198 32.8
Gohir.A03G000041 Gossypium hirsutum HOM05D002388 ORTHO05D004745 2.1e-11 72.8 201 33.3
Glyma.09G207100 Glycine max HOM05D002388 ORTHO05D004745 3.6e-11 72.0 196 34.7
Gohir.D03G175500 Gossypium hirsutum HOM05D002388 ORTHO05D004745 3.6e-11 72.0 202 33.2
Sp4g17700 Schrenkiella parvula HOM05D002388 ORTHO05D004745 3.6e-11 72.0 195 33.8
Ah.12g055410 Amaranthus hybridus HOM05D002388 ORTHO05D004745 4.7e-11 71.6 201 32.3
A09p33880 Brassica napus HOM05D002388 ORTHO05D004745 4.7e-11 71.6 194 33.5
BraA09t38936Z Brassica rapa HOM05D002388 ORTHO05D004745 4.7e-11 71.6 194 33.5
Lj8A306G57 Lonicera japonica HOM05D002388 ORTHO05D004745 7.9e-11 70.9 125 40.0
BcaB07g32907 Brassica carinata HOM05D002388 ORTHO05D004745 1.0e-10 70.5 190 34.7
Psat2g138920 Pisum sativum HOM05D002388 ORTHO05D004745 1.0e-10 70.5 199 35.2
AUR62018656 Chenopodium quinoa HOM05D002388 ORTHO05D004745 1.4e-10 70.1 202 31.7
PGR042G0491 Punica granatum HOM05D002388 ORTHO05D004745 1.4e-10 70.1 192 34.9
MSTRG.1999 Avicennia marina HOM05D002388 ORTHO05D004745 1.8e-10 69.7 202 31.7
BcaC02g11653 Brassica carinata HOM05D002388 ORTHO05D004745 1.8e-10 69.7 197 32.5
C04p12700 Brassica napus HOM05D002388 ORTHO05D004745 1.8e-10 69.7 197 32.5
BolC4t22918H Brassica oleracea HOM05D002388 ORTHO05D004745 1.8e-10 69.7 197 32.5
CARHR031630 Cardamine hirsuta HOM05D002388 ORTHO05D004745 1.8e-10 69.7 198 33.3
Thhalv10008414m.g Eutrema salsugineum HOM05D002388 ORTHO05D004745 1.8e-10 69.7 203 32.5
Lalb_Chr09g0325541 Lupinus albus HOM05D002388 ORTHO05D004745 1.8e-10 69.7 212 31.1
SGA_v2.0_scaffold20G09262 Striga asiatica HOM05D002388 ORTHO05D004745 1.8e-10 69.7 155 36.8
AUR62007343 Chenopodium quinoa HOM05D002388 ORTHO05D004745 2.3e-10 69.3 200 31.5
Oeu028869.2 Olea europaea HOM05D002388 ORTHO05D004745 2.3e-10 69.3 133 33.8
Gorai.003G184500 Gossypium raimondii HOM05D002388 ORTHO05D004745 3.0e-10 68.9 202 32.7
GSVIVG01013067001 Vitis vinifera HOM05D002388 ORTHO05D004745 3.0e-10 68.9 205 35.1
Carub.0001s3059 Capsella rubella HOM05D002388 ORTHO05D004745 5.1e-10 68.2 200 32.0
Potri.001G138200 Populus trichocarpa HOM05D002388 ORTHO05D004745 5.1e-10 68.2 203 32.5
Aa31LG9G15470 Aethionema arabicum HOM05D002388 ORTHO05D004745 6.7e-10 67.8 193 31.6
AL4G31530 Arabidopsis lyrata HOM05D002388 ORTHO05D004745 6.7e-10 67.8 197 32.5
AT1G32260 Arabidopsis thaliana HOM05D002388 ORTHO05D004745 6.7e-10 67.8 203 32.5
Nn3g19408 Nelumbo nucifera HOM05D002388 ORTHO05D004745 1.1e-09 67.0 196 33.2
PSO339G4108 Papaver somniferum HOM05D002388 ORTHO05D004745 1.1e-09 67.0 204 30.9
Sed0016521 Sechium edule HOM05D002388 ORTHO05D004745 1.1e-09 67.0 198 30.8
Lsat_1_v5_gn_6_95801 Lactuca sativa HOM05D002388 ORTHO05D004745 1.5e-09 66.6 202 32.2
A05p10250 Brassica napus HOM05D002388 ORTHO05D004745 2.0e-09 66.2 199 31.2
BraA05t19965Z Brassica rapa HOM05D002388 ORTHO05D004745 2.0e-09 66.2 199 31.2
Thhalv10017272m.g Eutrema salsugineum HOM05D002388 ORTHO05D004745 2.0e-09 66.2 197 31.5
VMungo1215G2489 Vigna mungo HOM05D002388 ORTHO05D004745 2.0e-09 66.2 193 35.2
Glyma.01G015300 Glycine max HOM05D002388 ORTHO05D004745 2.6e-09 65.9 192 31.8
Medtr5g029600 Medicago truncatula HOM05D002388 ORTHO05D004745 2.6e-09 65.9 196 33.2
BcaB02g09426 Brassica carinata HOM05D002388 ORTHO05D004745 3.3e-09 65.5 196 32.1
Nn1g00186 Nelumbo nucifera HOM05D002388 ORTHO05D004745 4.4e-09 65.1 204 32.4
ECA240G1207 Erigeron canadensis HOM05D002388 ORTHO05D004745 5.7e-09 64.7 129 36.4
Medtr8g066470 Medicago truncatula HOM05D002388 ORTHO05D004745 7.4e-09 64.3 207 29.5
Sp1g27940 Schrenkiella parvula HOM05D002388 ORTHO05D004745 9.7e-09 63.9 202 31.2
Phvul.002G137900 Phaseolus vulgaris HOM05D002388 ORTHO05D004745 1.3e-08 63.5 195 32.3
Sabra01G0106900 Salix brachista HOM05D002388 ORTHO05D008833 1.3e-08 63.5 175 32.6
BcaC05g27267 Brassica carinata HOM05D002388 ORTHO05D004745 1.7e-08 63.2 196 32.7
C05p31720 Brassica napus HOM05D002388 ORTHO05D004745 1.7e-08 63.2 196 32.7
BolC5t31898H Brassica oleracea HOM05D002388 ORTHO05D004745 1.7e-08 63.2 196 32.7
ECA233G5493 Erigeron canadensis HOM05D002388 ORTHO05D004745 1.7e-08 63.2 193 30.1
HanXRQChr02g0049371 Helianthus annuus HOM05D002388 ORTHO05D004745 1.7e-08 63.2 186 30.1
Lsat_1_v5_gn_6_3520 Lactuca sativa HOM05D002388 ORTHO05D004745 1.7e-08 63.2 185 31.9
AT2G35480 Arabidopsis thaliana HOM05D002388 ORTHO05D004745 2.2e-08 62.8 197 31.0
Haze_09168 Corylus avellana HOM05D002388 ORTHO05D004745 6.3e-08 61.2 94 41.5
Ciclev10003612m.g Citrus clementina HOM05D002388 ORTHO05D004745 1.4e-07 60.1 179 33.5
Carub.0004s1717 Capsella rubella HOM05D002388 ORTHO05D004745 1.8e-07 59.7 195 31.8
Sc22g0001810 Simmondsia chinensis HOM05D002388 ORTHO05D004745 1.8e-07 59.7 195 30.8
CAN.G1298.37 Capsicum annuum HOM05D002388 ORTHO05D004745 5.3e-07 58.2 137 34.3
HPP92_025448 Vanilla planifolia HOM05D002388 ORTHO05D004745 5.3e-07 58.2 202 33.7
HanXRQChr13g0419911 Helianthus annuus HOM05D002388 ORTHO05D004745 7.0e-07 57.8 195 30.8
CARHR129630 Cardamine hirsuta HOM05D002388 ORTHO05D004745 1.2e-06 57.0 197 30.5
Sabra03G0064500 Salix brachista HOM05D002388 ORTHO05D004745 1.5e-06 56.6 138 36.2
DCAR_008237 Daucus carota HOM05D002388 ORTHO05D004745 2.0e-06 56.2 128 33.6
Hma1.2p1_0870F.1_g230820 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 2.6e-06 55.8 119 34.5
Aqoxy3G02211 Aquilegia oxysepala HOM05D004797 ORTHO05D004745 4.5e-06 55.1 195 29.2
PSO384G0605 Papaver somniferum HOM05D002388 ORTHO05D004745 5.9e-06 54.7 151 33.8
unitig_21.g20893 Utricularia gibba HOM05D005023 ORTHO05D004745 5.9e-06 54.7 194 28.4


User provided reference genes

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